CRAN Package Check Results for Maintainer ‘Nicolas Cagnard <nicolas.cagnard at gmail.com>’

Last updated on 2019-11-18 20:47:56 CET.

Package NOTE
AnnotLists 12
GExMap 12

Package AnnotLists

Current CRAN status:

Version: 1.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'tcltk' which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    annot : annotlist: no visible global function definition for
     'read.table'
    annot : annotlist: no visible global function definition for
     'write.table'
    annot: no visible global function definition for 'flush.console'
    annot: no visible global function definition for 'read.table'
    Undefined global functions or variables:
     flush.console read.table write.table
    Consider adding
     importFrom("utils", "flush.console", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    annot : annotlist: no visible global function definition for
     'read.table'
    annot : annotlist: no visible global function definition for
     'write.table'
    annot: no visible global function definition for 'flush.console'
    annot: no visible global function definition for 'read.table'
    annot: no visible global function definition for 'choose.dir'
    Undefined global functions or variables:
     choose.dir flush.console read.table write.table
    Consider adding
     importFrom("utils", "choose.dir", "flush.console", "read.table",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package GExMap

Current CRAN status:

Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'multtest' which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    gexmap : gextest: no visible global function definition for
     'wilcox.test'
    gexmap : gextest: no visible global function definition for
     'chisq.test'
    gexmap : gextest: no visible global function definition for
     'binom.test'
    gexmap : gextest: no visible global function definition for 'pdf'
    gexmap : gextest: no visible global function definition for 'matplot'
    gexmap : gextest: no visible global function definition for 'legend'
    gexmap : gextest: no visible global function definition for 'dev.off'
    gexmap : gextest: no visible global function definition for
     'write.table'
    gexmap : gexgraph: no visible global function definition for 'pdf'
    gexmap : gexgraph: no visible global function definition for 'matplot'
    gexmap : gexgraph: no visible global function definition for 'title'
    gexmap : gexgraph: no visible global function definition for 'axis'
    gexmap : gexgraph: no visible global function definition for 'rect'
    gexmap : gexgraph: no visible global function definition for 'text'
    gexmap : gexgraph: no visible global function definition for 'legend'
    gexmap : gexgraph: no visible global function definition for 'dev.off'
    gexmap : gexgo: no visible global function definition for 'write.table'
    gexmap : gexgo: no visible global function definition for 'pdf'
    gexmap : gexgo: no visible global function definition for 'pie'
    gexmap : gexgo: no visible global function definition for 'palette'
    gexmap : gexgo: no visible global function definition for 'rainbow'
    gexmap : gexgo: no visible global function definition for 'text'
    gexmap : gexgo: no visible global function definition for 'dev.off'
    gexmap: no visible global function definition for 'flush.console'
    gexmap: no visible global function definition for 'read.table'
    gexmap: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     axis binom.test chisq.test dev.off flush.console legend matplot
     palette pdf pie rainbow read.table rect text title wilcox.test
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "palette", "pdf", "rainbow")
     importFrom("graphics", "axis", "legend", "matplot", "pie", "rect",
     "text", "title")
     importFrom("stats", "binom.test", "chisq.test", "wilcox.test")
     importFrom("utils", "flush.console", "read.table", "write.table")
    to your NAMESPACE file.
    
    Found the following calls to data() loading into the global environment:
    File 'GExMap/R/gexmap.R':
     data(list)
     data(data)
     data(corr)
    See section 'Good practice' in '?data'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: Rd line widths
Result: NOTE
    Rd file 'gexmap.Rd':
     \usage lines wider than 90 characters:
     gexmap(genome = "homosapiens", scale = "", source = "", res = "", isGO = FALSE, isMAP = TRUE, lim_chi = 5, global_test_choice = 4, pcor ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    gexmap : gextest: no visible global function definition for
     ‘wilcox.test’
    gexmap : gextest: no visible global function definition for
     ‘chisq.test’
    gexmap : gextest: no visible global function definition for
     ‘binom.test’
    gexmap : gextest: no visible global function definition for ‘pdf’
    gexmap : gextest: no visible global function definition for ‘matplot’
    gexmap : gextest: no visible global function definition for ‘legend’
    gexmap : gextest: no visible global function definition for ‘dev.off’
    gexmap : gextest: no visible global function definition for
     ‘write.table’
    gexmap : gexgraph: no visible global function definition for ‘pdf’
    gexmap : gexgraph: no visible global function definition for ‘matplot’
    gexmap : gexgraph: no visible global function definition for ‘title’
    gexmap : gexgraph: no visible global function definition for ‘axis’
    gexmap : gexgraph: no visible global function definition for ‘rect’
    gexmap : gexgraph: no visible global function definition for ‘text’
    gexmap : gexgraph: no visible global function definition for ‘legend’
    gexmap : gexgraph: no visible global function definition for ‘dev.off’
    gexmap : gexgo: no visible global function definition for ‘write.table’
    gexmap : gexgo: no visible global function definition for ‘pdf’
    gexmap : gexgo: no visible global function definition for ‘pie’
    gexmap : gexgo: no visible global function definition for ‘palette’
    gexmap : gexgo: no visible global function definition for ‘rainbow’
    gexmap : gexgo: no visible global function definition for ‘text’
    gexmap : gexgo: no visible global function definition for ‘dev.off’
    gexmap: no visible global function definition for ‘flush.console’
    gexmap: no visible global function definition for ‘read.table’
    gexmap: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     axis binom.test chisq.test dev.off flush.console legend matplot
     palette pdf pie rainbow read.table rect text title wilcox.test
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "palette", "pdf", "rainbow")
     importFrom("graphics", "axis", "legend", "matplot", "pie", "rect",
     "text", "title")
     importFrom("stats", "binom.test", "chisq.test", "wilcox.test")
     importFrom("utils", "flush.console", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64