CRAN Package Check Results for Package rbi

Last updated on 2019-10-18 08:51:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.10.2 6.11 39.15 45.26 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.10.2 4.81 30.88 35.69 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.10.2 74.28 NOTE
r-devel-linux-x86_64-fedora-gcc 0.10.2 74.19 NOTE
r-devel-windows-ix86+x86_64 0.10.2 16.00 75.00 91.00 WARN
r-patched-linux-x86_64 0.10.2 4.98 38.98 43.96 OK --no-examples --no-tests --no-vignettes
r-patched-solaris-x86 0.10.2 132.00 ERROR
r-release-linux-x86_64 0.10.2 4.73 38.59 43.32 OK --no-examples --no-tests --no-vignettes
r-release-windows-ix86+x86_64 0.10.2 11.00 101.00 112.00 OK
r-release-osx-x86_64 0.10.2 OK
r-oldrel-windows-ix86+x86_64 0.10.2 6.00 66.00 72.00 OK
r-oldrel-osx-x86_64 0.10.2 OK

Check Details

Version: 0.10.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘PZ.bi’ ‘mu_sigma.nc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.10.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'introduction.Rmd.rsp' using rsp
    Warning in parseRepos(sets = repos, where = where, fallback = fallback, :
     Had to fall back to a set of predefined repositories (please make sure to set your package repositories properly, cf. ?setRepositories): CRAN: '@CRAN@' -> 'http://cran.r-project.org'
    Error: processing vignette 'introduction.Rmd.rsp' failed with diagnostics:
    Failed to install package: knitr
    --- failed re-building 'introduction.Rmd.rsp'
    
    SUMMARY: processing the following file failed:
     'introduction.Rmd.rsp'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.10.2
Check: examples
Result: ERROR
    Running examples in ‘rbi-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: attach_data
    > ### Title: Attach a new file or data set to a 'libbi' object
    > ### Aliases: attach_data attach_data.libbi
    >
    > ### ** Examples
    >
    > bi <- libbi(model = system.file(package="rbi", "PZ.bi"))
    > example_output <- bi_read(system.file(package="rbi", "example_output.nc"))
    Error in R_nc4_open: NetCDF: HDF error
    Error in nc_open(tools::file_path_as_absolute(x)) :
     Error in nc_open trying to open file /home/ripley/R/Lib32/rbi/example_output.nc
    Calls: bi_read -> bi_open -> nc_open
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.10.2
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(rbi)
    
     Attaching package: 'rbi'
    
     The following objects are masked from 'package:stats':
    
     filter, optimise, predict, simulate, update
    
     The following object is masked from 'package:utils':
    
     fix
    
     The following object is masked from 'package:base':
    
     sample
    
     >
     > test_check("rbi")
     Error in R_nc4_open: NetCDF: HDF error
     ── 1. Error: (unknown) (@test-samples.r#4) ────────────────────────────────────
     Error in nc_open trying to open file /home/ripley/R/Lib32/rbi/example_output.nc
     1: bi_read(system.file(package = "rbi", "example_output.nc")) at testthat/test-samples.r:4
     2: bi_open(x)
     3: nc_open(tools::file_path_as_absolute(x))
     4: stop(paste("Error in nc_open trying to open file", filename))
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 145 | SKIPPED: 6 | WARNINGS: 32 | FAILED: 1 ]
     1. Error: (unknown) (@test-samples.r#4)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86