CRAN Package Check Results for Maintainer ‘S. Lebre <sophie.lebre at icube.unistra.fr>’

Last updated on 2019-11-18 20:48:00 CET.

Package NOTE
ARTIVA 12
G1DBN 12

Package ARTIVA

Current CRAN status:

Version: 1.2.3
Check: R code for possible problems
Result: NOTE
    ARTIVAnet: no visible global function definition for 'write.table'
    ARTIVAnet: no visible global function definition for 'pdf'
    ARTIVAnet: no visible global function definition for 'par'
    ARTIVAnet: no visible global function definition for 'dev.off'
    ARTIVAsubnet: no visible global function definition for 'pdf.options'
    ARTIVAsubnet: no visible global function definition for 'write.table'
    ARTIVAsubnetAnalysis: no visible global function definition for
     'write.table'
    ARTIVAsubnetAnalysis: no visible global function definition for 'pdf'
    ARTIVAsubnetAnalysis: no visible global function definition for 'par'
    ARTIVAsubnetAnalysis: no visible global function definition for
     'dev.off'
    PSRF: no visible binding for global variable 'var'
    PlotFunction: no visible global function definition for 'plot'
    bdu: no visible global function definition for 'runif'
    choosePriors: no visible global function definition for 'par'
    choosePriors: no visible global function definition for 'plot'
    cp.birth: no visible global function definition for 'rgamma'
    cp.birth: no visible global function definition for 'runif'
    cp.death: no visible global function definition for 'runif'
    cp.shift: no visible global function definition for 'runif'
    geneNetworkSummary: no visible global function definition for 'title'
    main: no visible global function definition for 'rgamma'
    main: no visible global function definition for 'runif'
    plotCP.postDist: no visible global function definition for 'par'
    plotCP.postDist: no visible global function definition for 'barplot'
    plotCP.postDist: no visible global function definition for 'abline'
    plotCP.postDist: no visible global function definition for 'plot'
    plotSegmentModel.postDist: no visible global function definition for
     'par'
    plotSegmentModel.postDist: no visible global function definition for
     'barplot'
    plotSegmentModel.postDist: no visible global function definition for
     'title'
    plotSegmentModel.postDist: no visible global function definition for
     'abline'
    readInput: no visible global function definition for 'read.table'
    rinvgamma: no visible global function definition for 'rgamma'
    sampleBinit: no visible global function definition for 'rnorm'
    sampleParms: no visible global function definition for 'rgamma'
    segment.update: no visible global function definition for 'rgamma'
    segment.update: no visible global function definition for 'runif'
    traceGeneProfiles: no visible global function definition for 'par'
    traceGeneProfiles: no visible global function definition for 'plot'
    traceGeneProfiles: no visible global function definition for 'lines'
    traceGeneProfiles: no visible global function definition for 'axis'
    traceNetworks: no visible global function definition for 'par'
    traceNetworks: no visible global function definition for 'legend'
    Undefined global functions or variables:
     abline axis barplot dev.off legend lines par pdf pdf.options plot
     read.table rgamma rnorm runif title var write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "pdf.options")
     importFrom("graphics", "abline", "axis", "barplot", "legend", "lines",
     "par", "plot", "title")
     importFrom("stats", "rgamma", "rnorm", "runif", "var")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package G1DBN

Current CRAN status:

Version: 3.1.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'MASS' 'igraph'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.1
Check: R code for possible problems
Result: NOTE
    DBNScoreStep1: no visible global function definition for 'lm'
    DBNScoreStep1: no visible global function definition for 'rlm'
    DBNScoreStep1: no visible global function definition for 'pt'
    DBNScoreStep2: no visible global function definition for 'lm'
    DBNScoreStep2: no visible global function definition for 'rlm'
    DBNScoreStep2: no visible global function definition for 'pt'
    SimulGeneExpressionAR1: no visible global function definition for
     'rnorm'
    SimulGeneExpressionAR1: no visible global function definition for 'ts'
    SimulNetworkAdjMatrix: no visible global function definition for
     'runif'
    Undefined global functions or variables:
     lm pt rlm rnorm runif ts
    Consider adding
     importFrom("stats", "lm", "pt", "rnorm", "runif", "ts")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64