Rsampletrees: MCMC Sampling of Gene Genealogies Conditional on Genetic Data

Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about 'sampletrees' can be found at <>.

Version: 1.0.2
Imports: Rcpp (≥ 0.12.9), haplo.stats, ape
LinkingTo: Rcpp
Published: 2018-01-03
Author: Kelly Burkett, Brad McNeney, Jinko Graham, Jean-Francois Lefebvre
Maintainer: Kelly Burkett <Rsampletrees at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: Rsampletrees results


Reference manual: Rsampletrees.pdf
Package source: Rsampletrees_1.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: Rsampletrees_1.0.2.tgz
OS X Mavericks binaries: r-oldrel: Rsampletrees_1.0.2.tgz
Old sources: Rsampletrees archive


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