**SCGLR** is an open source implementation of the Supervised Component Generalized Linear Regression (Bry et al. 2013, 2016, 2018), which identifies, among a large set of potentially multicolinear predictors, the strong dimensions most predictive of a set of responses.

**SCGLR** is an extension of partial least square regression (PLSR) to the uni- and multivariate generalized linear framework. PLSR is particularly well suited for analyzing a large array of explanatory variables and many studies have demonstrated its predictive performance in various biological fields such as genetics (Boulesteix and Strimmer 2007) or ecology (Carrascal, Galván, and Gordo 2009). While PLSR is well adapted for continuous variables, maximizing the covariance between linear combination of dependent variables, and linear combinations of covariates, **SCGLR** is suited for non-Gaussian outcomes and non-continuous covariates.

**SCGLR** is a model-based approach that extends PLS (Tenenhaus 1998), PCA on instrumental variables (Sabatier, Lebreton, and Chessel 1989), canonical correspondence analysis (Ter Braak 1987), and other related empirical methods, by capturing the trade-off between goodness-of-fit and common structural relevance of explanatory components. The notion of structural relevance has been introduced (Bry and Verron 2015).

**SCGLR** can deal with covariates partitioned in several groups called “themes”, plus a group of additional covariates. Each theme is searched for orthogonal components representing its variables in the model, whereas the additional covariates appear directly in the model, without the mediation of a component (Bry et al. 2019).

```
# Install release version from CRAN
install.packages("SCGLR")
# Install development version from GitHub
devtools::install_github("SCnext/SCGLR")
```

**SCGLR** is designed to deal with outcomes from multiple distributions: Gaussian, Bernoulli, binomial and Poisson separately or simultaneously (Bry et al. 2013). Moreover **SCGLR** is also able to deal with multiple conceptually homogeneous explanatory variable groups (Bry et al. 2018).

**SCGLR** is a set of **R** functions illustrated on a floristic data set, *genus*. `scglr`

and `scglrTheme`

are respectively dedicated to fitting the model with one or more thematic group of regressors. `scglrCrossVal`

and `scglrThemeBackward`

are respectively dedicated to selecting the number of components. `print`

, `summary`

and `plot`

methods are also available for the `scglr`

and `scglrTheme`

function results.

Different works are in progress both dealing for instance with the inclusion of random effects extending **SCGLR** to the generalized linear mixed model framework (Chauvet, Trottier, and Bry 2018a, 2018b), or the Cox regression model.

Boulesteix, Anne-Laure, and Korbinian Strimmer. 2007. “Partial Least Squares: A Versatile Tool for the Analysis of High-Dimensional Genomic Data.” *Briefings in Bioinformatics* 8 (1): 32–44. http://bib.oxfordjournals.org/content/8/1/32.short.

Bry, Xavier, Catherine Trottier, Frédéric Mortier, and Guillaume Cornu. 2019. “Component-Based Regularisation of a Multivariate GLM with a Thematic Partitioning of the Explanatory Variables.” *Statistical Modelling* 19 (0): 00–00 (to appear). <https://doi.org/TO BE ADDED>.

Bry, X., C. Trottier, F. Mortier, and G Cornu. 2018. “Component-Based Regularisation of a Multivariate Glm with a Thematic Partitioning of the Explanatory Variables.” *Statistical Modelling*, In press.

Bry, X., C. Trottier, F. Mortier, G. Cornu, and Verron T. 2016. “Supervised-Component-Based Generalised Linear Regression with Multiple Explanatory Blocks: THEME-Scglr.” In *The Multiple Facets of Partial Least Squares and Related Methods*, edited by H. Abdi, V.E. Vinzi, V. Russolillo, G. Saporta, and L Trinchera, 141–54. Switzerland: Springer Proceedings in Mathematics & Statistics.

Bry, X., C. Trottier, T. Verron, and F. Mortier. 2013. “Supervised Component Generalized Linear Regression Using a Pls-Extension of the Fisher Scoring Algorithm.” *Journal of Multivariate Analysis* 119: 47–60. http://www.sciencedirect.com/science/article/pii/S0047259X13000407.

Bry, X., and T Verron. 2015. “THEME: THEmatic Model Exploration Through Multiple Co-Structure Maximization.” *Journal of Chemometrics* 29 (12): 637–47. http://onlinelibrary.wiley.com/doi/10.1002/cem.2759/full.

Carrascal, Luis M., Ismael Galván, and Oscar Gordo. 2009. “Partial Least Squares Regression as an Alternative to Current Regression Methods Used in Ecology.” *Oikos* 118 (5): 681–90. http://onlinelibrary.wiley.com/doi/10.1111/j.1600-0706.2008.16881.x/full.

Chauvet, J., C. Trottier, and X Bry. 2018a. “Component-Based Regularisation of Multivariate Generalised Linear Mixed Models.” *Journal of Computational and Graphical Statistics*, In press.

———. 2018b. “Regularisation of Generalised Linear Mixed Models with Autoregressive Random Effect.” *Journal of Computational and Graphical Statistics*, In prep.

Sabatier, R., J. D. Lebreton, and D. Chessel. 1989. “Principal Component Analysis with Instrumental Variables as a Tool for Modelling Composition Data.” *Multiway Data Analysis*, 341–52.

Tenenhaus, M. 1998. *La Régression PLS: Théorie et Pratique*. Paris: Editions Technip. https://books.google.fr/books?hl=fr&lr=&id=OesjK2KZhsAC&oi=fnd&pg=PA1&dq=Tenenhaus+PLS&ots=EvUst85CEP&sig=EpksVNlZFUVoYLX7JX952PIGaHU.

Ter Braak, Cajo JF. 1987. “The Analysis of Vegetation-Environment Relationships by Canonical Correspondence Analysis.” In *Theory and Models in Vegetation Science*, 69–77. Springer. https://link.springer.com/chapter/10.1007/978-94-009-4061-1_7.