A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |
| abbyyR | Access to Abbyy Optical Character Recognition (OCR) API |
| abc | Tools for Approximate Bayesian Computation (ABC) |
| abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |
| ABC.RAP | Array Based CpG Region Analysis Pipeline |
| ABCanalysis | Computed ABC Analysis |
| abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |
| ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |
| ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |
| abcrf | Approximate Bayesian Computation via Random Forests |
| abctools | Tools for ABC Analyses |
| abd | The Analysis of Biological Data |
| abe | Augmented Backward Elimination |
| abf2 | Load Gap-Free Axon ABF2 Files |
| ABHgenotypeR | Easy Visualization of ABH Genotypes |
| abind | Combine Multidimensional Arrays |
| abjutils | Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association |
| abn | Modelling Multivariate Data with Additive Bayesian Networks |
| abnormality | Measure a Subject's Abnormality with Respect to a Reference Population |
| abodOutlier | Angle-Based Outlier Detection |
| ABPS | The Abnormal Blood Profile Score to Detect Blood Doping |
| AbsFilterGSEA | Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering |
| AbSim | Time Resolved Simulations of Antibody Repertoires |
| abundant | High-Dimensional Principal Fitted Components and Abundant Regression |
| Ac3net | Inferring Directional Conservative Causal Core Gene Networks |
| ACA | Abrupt Change-Point or Aberration Detection in Point Series |
| acc | Exploring Accelerometer Data |
| accelerometry | Functions for Processing Accelerometer Data |
| accelmissing | Missing Value Imputation for Accelerometer Data |
| AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |
| ACCLMA | ACC & LMA Graph Plotting |
| accrual | Bayesian Accrual Prediction |
| accrued | Data Quality Visualization Tools for Partially Accruing Data |
| accSDA | Accelerated Sparse Discriminant Analysis |
| ACD | Categorical data analysis with complete or missing responses |
| ACDm | Tools for Autoregressive Conditional Duration Models |
| acebayes | Optimal Bayesian Experimental Design using the ACE Algorithm |
| acepack | ACE and AVAS for Selecting Multiple Regression Transformations |
| ACEt | Estimating Dynamic Heritability and Twin Model Comparison |
| acid | Analysing Conditional Income Distributions |
| acm4r | Align-and-Count Method comparisons of RFLP data |
| ACMEeqtl | Estimation of Interpretable eQTL Effect Sizes Using a Log of Linear Model |
| acmeR | Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines |
| ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |
| acnr | Annotated Copy-Number Regions |
| acopula | Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas |
| AcousticNDLCodeR | Coding Sound Files for Use with NDL |
| acp | Autoregressive Conditional Poisson |
| aCRM | Convenience functions for analytical Customer Relationship Management |
| AcrossTic | A Cost-Minimal Regular Spanning Subgraph with TreeClust |
| acrt | Autocorrelation Robust Testing |
| acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |
| ACSNMineR | Gene Enrichment Analysis from ACSN Maps or GMT Files |
| acss | Algorithmic Complexity for Short Strings |
| acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |
| ACSWR | A Companion Package for the Book "A Course in Statistics with R" |
| ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |
| Actigraphy | Actigraphy Data Analysis |
| ActisoftR | A Toolbox for Parsing Scored Actigraphy Data |
| ActiveDriver | Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites |
| activity | Animal Activity Statistics |
| activpalProcessing | Process activPAL Events Files |
| actogrammr | Read in Activity Data and Plot Actograms |
| actuar | Actuarial Functions and Heavy Tailed Distributions |
| AcuityView | A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity |
| ada | The R Package Ada for Stochastic Boosting |
| adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |
| adagio | Discrete and Global Optimization Routines |
| AdapEnetClass | A Class of Adaptive Elastic Net Methods for Censored Data |
| adapr | Implementation of an Accountable Data Analysis Process |
| AdapSamp | Adaptive Sampling Algorithms |
| adaptalint | Check Code Style Painlessly |
| AdaptFit | Adaptive Semiparametic Regression |
| AdaptFitOS | Adaptive Semiparametric Additive Regression with Simultaneous Confidence Bands and Specification Tests |
| AdaptGauss | Gaussian Mixture Models (GMM) |
| adaptiveGPCA | Adaptive Generalized PCA |
| AdaptiveSparsity | Adaptive Sparsity Models |
| adaptivetau | Tau-Leaping Stochastic Simulation |
| adaptMCMC | Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler |
| adaptMT | Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information |
| adaptsmoFMRI | Adaptive Smoothing of FMRI Data |
| adaptTest | Adaptive two-stage tests |
| AdaSampling | Adaptive Sampling for Positive Unlabeled and Label Noise Learning |
| ADCT | Adaptive Design in Clinical Trials |
| addhaz | Binomial and Multinomial Additive Hazard Models |
| addhazard | Fit Additive Hazards Models for Survival Analysis |
| addinslist | Discover and Install Useful RStudio Addins |
| additiveDEA | Additive Data Envelopment Analysis Models |
| additivityTests | Additivity Tests in the Two Way Anova with Single Sub-class Numbers |
| addreg | Additive Regression for Discrete Data |
| ADDT | Analysis of Accelerated Destructive Degradation Test Data |
| ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |
| ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |
| adeba | Adaptive Density Estimation by Bayesian Averaging |
| adegenet | Exploratory Analysis of Genetic and Genomic Data |
| adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |
| adehabitatHR | Home Range Estimation |
| adehabitatHS | Analysis of Habitat Selection by Animals |
| adehabitatLT | Analysis of Animal Movements |
| adehabitatMA | Tools to Deal with Raster Maps |
| adephylo | Exploratory Analyses for the Phylogenetic Comparative Method |
| adepro | A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles |
| AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |
| adespatial | Multivariate Multiscale Spatial Analysis |
| adfExplorer | Import from and Export to Amiga Disk Files |
| ADGofTest | Anderson-Darling GoF test |
| AdhereR | Adherence to Medications |
| adhoc | Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification |
| adimpro | Adaptive Smoothing of Digital Images |
| adiv | Analysis of Diversity |
| AdjBQR | Adjusted Bayesian Quantile Regression Inference |
| adjclust | Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix |
| adjustedcranlogs | Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs |
| adklakedata | Adirondack Long-Term Lake Data |
| adlift | An Adaptive Lifting Scheme Algorithm |
| AdMit | Adaptive Mixture of Student-t Distributions |
| admixturegraph | Admixture Graph Manipulation and Fitting |
| ADMM | Algorithms using Alternating Direction Method of Multipliers |
| ADMMnet | Regularized Model with Selecting the Number of Non-Zeros |
| ADMMsigma | Penalized Precision Matrix Estimation via ADMM |
| adnuts | No-U-Turn MCMC Sampling for 'ADMB' and 'TMB' Models |
| ADPclust | Fast Clustering Using Adaptive Density Peak Detection |
| ADPF | Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay |
| adpss | Design and Analysis of Locally or Globally Efficient Adaptive Designs |
| ads | Spatial Point Patterns Analysis |
| AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |
| advclust | Object Oriented Advanced Clustering |
| AdvDif4 | Solving 1D Advection Bi-Flux Diffusion Equation |
| adwave | Wavelet Analysis of Genomic Data from Admixed Populations |
| adwordsR | Access the 'Google Adwords' API |
| AEDForecasting | Change Point Analysis in ARIMA Forecasting |
| aemo | Download and Process AEMO Price and Demand Data |
| AER | Applied Econometrics with R |
| AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |
| afc | Generalized Discrimination Score |
| afCEC | Active Function Cross-Entropy Clustering |
| afex | Analysis of Factorial Experiments |
| affluenceIndex | Affluence Indices |
| AFM | Atomic Force Microscope Image Analysis |
| afmToolkit | Functions for Atomic Force Microscope Force-Distance Curves Analysis |
| afpt | Tools for Modelling of Animal Flight Performance |
| aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |
| AGD | Analysis of Growth Data |
| AggregateR | Aggregate Numeric, Date and Categorical Variables by an ID |
| aggregation | p-Value Aggregation Methods |
| AGHmatrix | Relationship Matrices for Diploid and Autopolyploid Species |
| agop | Aggregation Operators and Preordered Sets |
| AGread | Read Data Files from ActiGraph Monitors |
| agRee | Various Methods for Measuring Agreement |
| AgreementInterval | Agreement Interval of Two Measurement Methods |
| agricolae | Statistical Procedures for Agricultural Research |
| agridat | Agricultural Datasets |
| agriTutorial | Tutorial Analysis of Some Agricultural Experiments |
| agrmt | Calculate Agreement or Consensus in Ordered Rating Scales |
| AGSDest | Estimation in Adaptive Group Sequential Trials |
| agsemisc | Miscellaneous plotting and utility functions |
| ahaz | Regularization for semiparametric additive hazards regression |
| AHMbook | Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' |
| ahnr | An Implementation of the Artificial Hydrocarbon Networks |
| AhoCorasickTrie | Fast Searching for Multiple Keywords in Multiple Texts |
| ahp | Analytic Hierarchy Process |
| ahpsurvey | Analytic Hierarchy Process for Survey Data |
| AHR | Estimation and Testing of Average Hazard Ratios |
| AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |
| AID | Box-Cox Power Transformation |
| aidar | Tools for Reading AIDA Files |
| AIG | Automatic Item Generator |
| AIM | AIM: adaptive index model |
| aimPlot | Create Pie Like Plot for Completeness |
| aire.zmvm | Download Mexico City Pollution, Wind, and Temperature Data |
| airGR | Suite of GR Hydrological Models for Precipitation-Runoff Modelling |
| airGRteaching | Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included) |
| airportr | Convenience Tools for Working with Airport Data |
| airr | AIRR Data Representation Reference Library |
| aiRthermo | Atmospheric Thermodynamics and Visualization |
| ajv | Another JSON Schema Validator |
| Ake | Associated Kernel Estimations |
| akima | Interpolation of Irregularly and Regularly Spaced Data |
| akmeans | Adaptive Kmeans algorithm based on threshold |
| ALA4R | Atlas of Living Australia (ALA) Data and Resources in R |
| alabama | Constrained Nonlinear Optimization |
| alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |
| albopictus | Age-Structured Population Dynamics Model |
| ald | The Asymmetric Laplace Distribution |
| ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |
| ALEPlot | Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots |
| aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |
| alfred | Downloading Time Series from ALFRED Database for Various Vintages |
| AlgDesign | Algorithmic Experimental Design |
| AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |
| algorithmia | Allows you to Easily Interact with the Algorithmia Platform |
| algstat | Algebraic statistics in R |
| alignfigR | Visualizing Multiple Sequence Alignments with 'ggplot2' |
| alineR | Alignment of Phonetic Sequences Using the 'ALINE' Algorithm |
| ALKr | Generate Age-Length Keys for fish populations |
| allan | Automated Large Linear Analysis Node |
| allanvar | Allan Variance Analysis |
| alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |
| allelematch | Identifying unique multilocus genotypes where genotyping error and missing data may be present |
| AlleleRetain | Allele Retention, Inbreeding, and Demography |
| allelic | A fast, unbiased and exact allelic exact test |
| AllPossibleSpellings | Computes all of a word's possible spellings |
| alluvial | Alluvial Diagrams |
| alpaca | Fit GLM's with High-Dimensional k-Way Fixed Effects |
| alphabetr | Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells |
| alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |
| alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |
| alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |
| AlphaSimR | Breeding Program Simulations |
| alphastable | Inference for Stable Distribution |
| AlphaVantageClient | Wrapper for Alpha Vantage API |
| alphavantager | Lightweight R Interface to the Alpha Vantage API |
| alr3 | Data to Accompany Applied Linear Regression 3rd Edition |
| alr4 | Data to Accompany Applied Linear Regression 4th Edition |
| ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |
| ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |
| ALSM | Companion to Applied Linear Statistical Models |
| alterryx | An 'API' Client for the 'Alteryx' Gallery |
| altmeta | Alternative Meta-Analysis Methods |
| ALTopt | Optimal Experimental Designs for Accelerated Life Testing |
| amap | Another Multidimensional Analysis Package |
| AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |
| ambhasGW | Ground Water Modelling |
| ambient | A Generator of Multidimensional Noise |
| AMCP | A Model Comparison Perspective |
| AMCTestmakeR | Generate LaTeX Code for Auto-Multiple-Choice (AMC) |
| ameco | European Commission Annual Macro-Economic (AMECO) Database |
| Amelia | A Program for Missing Data |
| amelie | Anomaly Detection with Normal Probability Functions |
| amen | Additive and Multiplicative Effects Models for Networks and Relational Data |
| AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts |
| AmesHousing | The Ames Iowa Housing Data |
| AMGET | Post-processing tool for ADAPT 5 |
| AMIAS | Alternating Minimization Induced Active Set Algorithms |
| AmigaFFH | Commodore Amiga File Format Handler |
| aml | Adaptive Mixed LASSO |
| ammistability | Additive Main Effects and Multiplicative Interaction Model Stability Parameters |
| AMModels | Adaptive Management Model Manager |
| AmmoniaConcentration | Un-Ionized Ammonia Concentration |
| aMNLFA | Automated Fitting of Moderated Nonlinear Factor Analysis Through the 'Mplus' Program |
| AMOEBA | A Multidirectional Optimum Ecotope-Based Algorithm |
| AMORE | A MORE flexible neural network package |
| AmostraBrasil | Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps |
| ampd | An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals |
| AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |
| AMR | Antimicrobial Resistance Analysis |
| amt | Animal Movement Tools |
| AmyloGram | Prediction of Amyloid Proteins |
| AnaCoDa | Analysis of Codon Data under Stationarity using a Bayesian Framework |
| anacor | Simple and Canonical Correspondence Analysis |
| analogsea | Interface to 'Digital Ocean' |
| analogue | Analogue and Weighted Averaging Methods for Palaeoecology |
| analogueExtra | Additional Functions for Use with the Analogue Package |
| analytics | Regression Outlier Detection, Stationary Bootstrap, Testing Weak Stationarity, NA Imputation, and Other Tools for Data Analysis |
| analyz | Model Layer for Automatic Data Analysis via CSV File Interpretation |
| AnalyzeFMRI | Functions for Analysis of fMRI Datasets Stored in the ANALYZE or NIFTI Format |
| AnalyzeTS | Analyze Fuzzy Time Series |
| AncestryMapper | Assigning Ancestry Based on Population References |
| anchoredDistr | Post-Processing for the Method of Anchored Distributions |
| anchors | Statistical analysis of surveys with anchoring vignettes |
| AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |
| andrews | Andrews curves |
| anesrake | ANES Raking Implementation |
| anfis | Adaptive Neuro Fuzzy Inference System in R |
| AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |
| angstroms | Tools for 'ROMS' the Regional Ocean Modeling System |
| aniDom | Inferring Dominance Hierarchies and Estimating Uncertainty |
| anim.plots | Simple Animated Plots for R |
| animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |
| animation | A Gallery of Animations in Statistics and Utilities to Create Animations |
| anipaths | Animation of Observed Trajectories Using Spline-Based Interpolation |
| anMC | Compute High Dimensional Orthant Probabilities |
| ANN2 | Artificial Neural Networks for Anomaly Detection |
| AnnotationBustR | Extract Subsequences from GenBank Annotations |
| AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file |
| AnnuityRIR | Annuity Random Interest Rates |
| anocva | A Non-Parametric Statistical Test to Compare Clustering Structures |
| anoint | Analysis of Interactions |
| ANOM | Analysis of Means |
| anomalize | Tidy Anomaly Detection |
| anomaly | Detecting Anomalies in Data |
| anomalyDetection | Implementation of Augmented Network Log Anomaly Detection Procedures |
| anominate | Alpha-NOMINATE Ideal Point Estimator |
| anonymizer | Anonymize Data Containing Personally Identifiable Information |
| ANOVA.TFNs | One-Way Analysis of Variance Based on Triangular Fuzzy Numbers |
| ANOVAreplication | Test ANOVA Replications by Means of the Prior Predictive p-Value |
| AntAngioCOOL | Anti-Angiogenic Peptide Prediction |
| antaresProcessing | 'Antares' Results Processing |
| antaresRead | Import, Manipulate and Explore the Results of an 'Antares' Simulation |
| antaresViz | Antares Visualizations |
| AnthropMMD | An R-Shiny Application for Smith's Mean Measure of Divergence (MMD) |
| Anthropometry | Statistical Methods for Anthropometric Data |
| antitrust | Tools for Antitrust Practitioners |
| antiword | Extract Text from Microsoft Word Documents |
| AntWeb | programmatic interface to the AntWeb |
| anyflights | Download Air Travel Data for Specified Years and Airports |
| anyLib | Install and Load Any Package from CRAN, Bioconductor or Github |
| anytime | Anything to 'POSIXct' or 'Date' Converter |
| aod | Analysis of Overdispersed Data |
| aods3 | Analysis of Overdispersed Data using S3 Methods |
| aoos | Another Object Orientation System |
| aop | Adverse Outcome Pathway Analysis |
| Aoptbdtvc | A-Optimal Block Designs for Comparing Test Treatments with Controls |
| aoristic | aoristic analysis with spatial output (kml) |
| apa | Format Outputs of Statistical Tests According to APA Guidelines |
| ApacheLogProcessor | Process the Apache Web Server Log Files |
| apaTables | Create American Psychological Association (APA) Style Tables |
| apaText | Create R Markdown Text for Results in the Style of the American Psychological Association (APA) |
| apc | Age-Period-Cohort Analysis |
| APCanalysis | Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons |
| apcluster | Affinity Propagation Clustering |
| apdesign | An Implementation of the Additive Polynomial Design Matrix |
| ape | Analyses of Phylogenetics and Evolution |
| apercu | Quick Look at your Data |
| apex | Phylogenetic Methods for Multiple Gene Data |
| APfun | Geo-Processing Helper Functions |
| aphid | Analysis with Profile Hidden Markov Models |
| aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013) |
| aplpack | Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others |
| APML0 | Augmented and Penalized Minimization Method L0 |
| apmsWAPP | Pre- and Postprocessing for AP-MS data analysis based on spectral counts |
| apng | Convert Png Files into Animated Png |
| appell | Compute Appell's F1 hypergeometric function |
| APPEstimation | Adjusted Prediction Model Performance Estimation |
| apple | Approximate Path for Penalized Likelihood Estimators |
| AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |
| appnn | Amyloid Propensity Prediction Neural Network |
| approximator | Bayesian Prediction of Complex Computer Codes |
| approxmatch | Approximately Optimal Fine Balance Matching with Multiple Groups |
| aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |
| apricom | Tools for the a Priori Comparison of Regression Modelling Strategies |
| aprof | Amdahl's Profiler, Directed Optimization Made Easy |
| APSIM | General Utility Functions for the 'Agricultural Production Systems Simulator' |
| APSIMBatch | Analysis the output of Apsim software |
| apsimr | Edit, Run and Evaluate APSIM Simulations Easily Using R |
| apsrtable | apsrtable model-output formatter for social science |
| apt | Asymmetric Price Transmission |
| aptg | Automatic Phylogenetic Tree Generator |
| APtools | Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |
| apTreeshape | Analyses of Phylogenetic Treeshape |
| aqfig | Functions to help display air quality model output and monitoring data |
| aqp | Algorithms for Quantitative Pedology |
| aqr | Interface methods to use with an ActiveQuant Master Server |
| AquaEnv | Integrated Development Toolbox for Aquatic Chemical Model Generation |
| AR | Another Look at the Acceptance-Rejection Method |
| AR1seg | Segmentation of an autoregressive Gaussian process of order 1 |
| arabicStemR | Arabic Stemmer for Text Analysis |
| ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |
| arc | Association Rule Classification |
| ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |
| ArchaeoChron | Bayesian Modeling of Archaeological Chronologies |
| ArchaeoPhases | Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' |
| archdata | Example Datasets from Archaeological Research |
| archetypes | Archetypal Analysis |
| archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |
| archivist | Tools for Storing, Restoring and Searching for R Objects |
| archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |
| ArCo | Artificial Counterfactual Package |
| ArDec | Time series autoregressive-based decomposition |
| areaplot | Plot Stacked Areas and Confidence Bands as Filled Polygons |
| arena2r | Plots, Summary Statistics and Tools for Arena Simulation Users |
| arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |
| arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |
| ArfimaMLM | Arfima-MLM Estimation For Repeated Cross-Sectional Data |
| argon2 | Secure Password Hashing |
| argosfilter | Argos locations filter |
| argparse | Command Line Optional and Positional Argument Parser |
| argparser | Command-Line Argument Parser |
| ArgumentCheck | Improved Communication to Users with Respect to Problems in Function Arguments |
| ARHT | Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data |
| ari | Automated R Instructor |
| ARIbrain | All-Resolution Inference |
| aricode | Efficient Computations of Standard Clustering Comparison Measures |
| arkdb | Archive and Unarchive Databases Using Flat Files |
| arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
| arnie | "Arnie" box office records 1982-2014 |
| AROC | Covariate-Adjusted Receiver Operating Characteristic Curve Inference |
| aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |
| aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |
| aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |
| aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |
| Arothron | Geometric Morphometrics Analyses |
| ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |
| aRpsDCA | Arps Decline Curve Analysis in R |
| arrangements | Fast Generators and Iterators for Permutations, Combinations and Partitions |
| arrApply | Apply a Function to a Margin of an Array |
| ArrayBin | Binarization of numeric data arrays |
| arrayhelpers | Convenience Functions for Arrays |
| ars | Adaptive Rejection Sampling |
| arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |
| ART | Aligned Rank Transform for Nonparametric Factorial Analysis |
| artfima | ARTFIMA Model Estimation |
| ARTIVA | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model |
| ARTool | Aligned Rank Transform |
| ARTP | Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product |
| ARTP2 | Pathway and Gene-Level Association Test |
| arules | Mining Association Rules and Frequent Itemsets |
| arulesCBA | Classification Based on Association Rules |
| arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |
| arulesSequences | Mining Frequent Sequences |
| arulesViz | Visualizing Association Rules and Frequent Itemsets |
| aRxiv | Interface to the arXiv API |
| asaur | Data Sets for "Applied Survival Analysis Using R"" |
| asbio | A Collection of Statistical Tools for Biologists |
| ascii | Export R objects to several markup languages |
| asciiruler | Render an ASCII Ruler |
| asciiSetupReader | Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and Setup Files (.sps or .sas) |
| asd | Simulations for Adaptive Seamless Designs |
| asdreader | Reading ASD Binary Files in R |
| ASGS.foyer | Interface to the Australian Statistical Geography Standard |
| ash | David Scott's ASH Routines |
| ashr | Methods for Adaptive Shrinkage, using Empirical Bayes |
| asht | Applied Statistical Hypothesis Tests |
| AsioHeaders | 'Asio' C++ Header Files |
| ASIP | Automated Satellite Image Processing |
| aslib | Interface to the Algorithm Selection Benchmark Library |
| ASMap | Linkage Map Construction using the MSTmap Algorithm |
| asnipe | Animal Social Network Inference and Permutations for Ecologists |
| aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |
| ASPBay | Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data |
| aSPC | An Adaptive Sum of Powered Correlation Test (aSPC) for Global Association Between Two Random Vectors |
| aspect | A General Framework for Multivariate Analysis with Optimal Scaling |
| aspi | Analysis of Symmetry of Parasitic Infections |
| aSPU | Adaptive Sum of Powered Score Test |
| asremlPlus | Augments the Use of 'ASReml-R' in Fitting Mixed Models |
| ASSA | Applied Singular Spectrum Analysis (ASSA) |
| AssayCorrector | Detection and Correction of Spatial Bias in HTS Screens |
| assertable | Verbose Assertions for Tabular Data (Data.frames and Data.tables) |
| assertive | Readable Check Functions to Ensure Code Integrity |
| assertive.base | A Lightweight Core of the 'assertive' Package |
| assertive.code | Assertions to Check Properties of Code |
| assertive.data | Assertions to Check Properties of Data |
| assertive.data.uk | Assertions to Check Properties of Strings |
| assertive.data.us | Assertions to Check Properties of Strings |
| assertive.datetimes | Assertions to Check Properties of Dates and Times |
| assertive.files | Assertions to Check Properties of Files |
| assertive.matrices | Assertions to Check Properties of Matrices |
| assertive.models | Assertions to Check Properties of Models |
| assertive.numbers | Assertions to Check Properties of Numbers |
| assertive.properties | Assertions to Check Properties of Variables |
| assertive.reflection | Assertions for Checking the State of R |
| assertive.sets | Assertions to Check Properties of Sets |
| assertive.strings | Assertions to Check Properties of Strings |
| assertive.types | Assertions to Check Types of Variables |
| assertr | Assertive Programming for R Analysis Pipelines |
| assertthat | Easy Pre and Post Assertions |
| AssetCorr | Estimating Asset Correlations from Default Data |
| AssetPricing | Optimal Pricing of Assets with Fixed Expiry Date |
| assignPOP | Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework |
| assist | A Suite of R Functions Implementing Spline Smoothing Techniques |
| ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |
| AssocAFC | Allele Frequency Comparison |
| assocInd | Implements New and Existing Association Indices for Constructing Animal Social Networks |
| AssocTests | Genetic Association Studies |
| assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |
| AssotesteR | Statistical Tests for Genetic Association Studies |
| AST | Age-Spatial-Temporal Model |
| aster | Aster Models |
| aster2 | Aster Models |
| astro | Astronomy Functions, Tools and Routines |
| astrochron | A Computational Tool for Astrochronology |
| astrodatR | Astronomical Data |
| astroFns | Astronomy: time and position functions, misc. utilities |
| astrolibR | Astronomy Users Library |
| astsa | Applied Statistical Time Series Analysis |
| asus | Adaptive SURE Thresholding Using Side Information |
| asVPC | Average Shifted Visual Predictive Checks |
| asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |
| asymmetry | Multidimensional Scaling of Asymmetric Data |
| asympTest | A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples |
| AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |
| asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
| atable | Create Tables for Reporting Clinical Trials |
| ATE | Inference for Average Treatment Effects using Covariate Balancing |
| AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |
| atlantistools | Process and Visualise Output from Atlantis Models |
| atlas | Stanford 'ATLAS' Search Engine API |
| atmcmc | Automatically Tuned Markov Chain Monte Carlo |
| ATmet | Advanced Tools for Metrology |
| AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |
| ATR | Alternative Tree Representation |
| aTSA | Alternative Time Series Analysis |
| atsd | Support Querying Axibase Time-Series Database |
| attempt | Easy Condition Handling |
| attrCUSUM | Tools for Attribute VSI CUSUM Control Chart |
| attribrisk | Population Attributable Risk |
| atus | American Time Use Survey Data |
| AUC | Threshold independent performance measures for probabilistic classifiers |
| aucm | AUC Maximization |
| AUCRF | Variable Selection with Random Forest and the Area Under the Curve |
| auctestr | Statistical Testing for AUC Data |
| audio | Audio Interface for R |
| audiolyzR | audiolyzR: Give your data a listen |
| audit | Bounds for Accounting Populations |
| auditor | Model Audit - Verification, Validation, and Error Analysis |
| augmentedRCBD | Analysis of Augmented Randomised Complete Block Designs |
| augSIMEX | Analysis of Data with Mixed Measurement Error and Misclassification in Covariates |
| auk | eBird Data Extraction and Processing in R |
| aurelius | Generates PFA Documents from R Code and Optionally Runs Them |
| AurieLSHGaussian | Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections |
| auRoc | Various Methods to Estimate the AUC |
| AUtests | Approximate Unconditional and Permutation Tests |
| auto.pca | Automatic Variable Reduction Using Principal Component Analysis |
| autoBagging | Learning to Rank Bagging Workflows with Metalearning |
| autocogs | Automatic Cognostic Summaries |
| AutoDeskR | An Interface to the 'AutoDesk' 'API' Platform |
| autoencoder | Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |
| autoFRK | Automatic Fixed Rank Kriging |
| autoimage | Multiple Heat Maps for Projected Coordinates |
| automagic | Automagically Document and Install Packages Necessary to Run R Code |
| automap | Automatic interpolation package |
| automl | Deep Learning with Metaheuristic |
| AutoModel | Automated Hierarchical Multiple Regression with Assumptions Checking |
| automultinomial | Autologistic and Automultinomial Spatial Regression and Variable Selection |
| autoplotly | Automatic Generation of Interactive Visualizations for Statistical Results |
| Autoplotprotein | Development of Visualization Tools for Protein Sequence |
| autopls | Partial Least Squares Regression with Backward Selection of Predictors |
| AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |
| AutoSEARCH | General-to-Specific (GETS) Modelling |
| autoshiny | Automatic Transformation of an 'R' Function into a 'shiny' App |
| autothresholdr | An R Port of the 'ImageJ' Plugin 'Auto Threshold' |
| autovarCore | Automated Vector Autoregression Models and Networks |
| av | Working with Audio and Video |
| available | Check if the Title of a Package is Available, Appropriate and Interesting |
| averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |
| aVirtualTwins | Adaptation of Virtual Twins Method from Jared Foster |
| AWR | 'AWS' Java 'SDK' for R |
| AWR.Athena | 'AWS' Athena 'DBI' Wrapper |
| AWR.Kinesis | Amazon 'Kinesis' Consumer Application for Stream Processing |
| AWR.KMS | A Simple Client to the 'AWS' Key Management Service |
| aws | Adaptive Weights Smoothing |
| aws.alexa | Client for the Amazon Alexa Web Information Services API |
| aws.cloudtrail | AWS CloudTrail Client Package |
| aws.comprehend | 'AWS Comprehend' Client Package |
| aws.ec2metadata | Get EC2 Instance Metadata |
| aws.iam | AWS IAM Client Package |
| aws.kms | 'AWS Key Management Service' Client Package |
| aws.lambda | AWS Lambda Client Package |
| aws.polly | Client for AWS Polly |
| aws.s3 | 'AWS S3' Client Package |
| aws.ses | AWS SES Client Package |
| aws.signature | Amazon Web Services Request Signatures |
| aws.sns | AWS SNS Client Package |
| aws.sqs | AWS SQS Client Package |
| aws.transcribe | Client for 'AWS Transcribe' |
| aws.translate | Client for 'AWS Translate' |
| awsjavasdk | Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK |
| awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' |
| awspack | Amazon Web Services Bundle Package |
| AzureML | Interface with Azure Machine Learning Datasets, Experiments and Web Services |
| B2Z | Bayesian Two-Zone Model |
| b6e6rl | Adaptive differential evolution, b6e6rl variant |
| babar | Bayesian Bacterial Growth Curve Analysis in R |
| babel | Ribosome Profiling Data Analysis |
| BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data |
| babynames | US Baby Names 1880-2015 |
| BACA | Bubble Chart to Compare Biological Annotations by using DAVID |
| BacArena | Modeling Framework for Cellular Communities in their Environments |
| BACCO | Bayesian Analysis of Computer Code Output (BACCO) |
| BACCT | Bayesian Augmented Control for Clinical Trials |
| bacistool | Bayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials |
| backblazer | Bindings to the Backblaze B2 API |
| backpipe | Backward Pipe (Right-to-Left) Operator |
| backports | Reimplementations of Functions Introduced Since R-3.0.0 |
| backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |
| backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |
| BACprior | Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm |
| bacr | Bayesian Adjustment for Confounding |
| badgecreatr | Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme |
| badger | Badge for R Package |
| BAEssd | Bayesian Average Error approach to Sample Size Determination |
| bagRboostR | Ensemble bagging and boosting classifiers |
| bairt | Bayesian Analysis of Item Response Theory Models |
| baitmet | Library Driven Compound Profiling in Gas Chromatography - Mass Spectrometry Data |
| balance | Visualize Balances of Compositional Data |
| BalanceCheck | Balance Check for Multiple Covariates in Matched Observational Studies |
| BalancedSampling | Balanced and Spatially Balanced Sampling |
| BALCONY | Better ALignment CONsensus analYsis |
| Ball | Statistical Inference and Sure Independence Screening via Ball Statistics |
| ballr | Access to Current and Historical Basketball Data |
| BaM | Functions and Datasets for Books by Jeff Gill |
| BAMBI | Bivariate Angular Mixture Models |
| bamboo | Protein Secondary Structure Prediction Using the Bamboo Method |
| bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |
| bamlss | Bayesian Additive Models for Location Scale and Shape (and Beyond) |
| BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |
| bandit | Functions for simple A/B split test and multi-armed bandit analysis |
| BANEScarparkinglite | Working with Car Parking Data for Bath and North East Somerset |
| bang | Bayesian Analysis, No Gibbs |
| bannerCommenter | Make Banner Comments with a Consistent Format |
| BANOVA | Hierarchical Bayesian ANOVA Models |
| banR | R Client for the BAN API |
| banter | BioAcoustic EveNT ClassifiER |
| banxicoR | Download Data from the Bank of Mexico |
| bapred | Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |
| BaPreStoPro | Bayesian Prediction of Stochastic Processes |
| BarBorGradient | Function Minimum Approximator |
| barcode | Barcode distribution plots |
| BarcodingR | Species Identification using DNA Barcodes |
| Barnard | Barnard's Unconditional Test |
| BART | Bayesian Additive Regression Trees |
| bartMachine | Bayesian Additive Regression Trees |
| bartMachineJARs | bartMachine JARs |
| Barycenter | Regularized Wasserstein Distances and Barycenters |
| BAS | Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling |
| basad | Bayesian Variable Selection with Shrinking and Diffusing Priors |
| base2grob | Convert Base Plot to 'grob' Object |
| base64 | Base64 Encoder and Decoder |
| base64enc | Tools for base64 encoding |
| base64url | Fast and URL-Safe Base64 Encoder and Decoder |
| baseballDBR | Sabermetrics and Advanced Baseball Statistics |
| basefun | Infrastructure for Computing with Basis Functions |
| baseline | Baseline Correction of Spectra |
| basicMCMCplots | Trace Plots, Density Plots and Chain Comparisons for MCMC Samples |
| basicspace | Recovering a Basic Space from Issue Scales |
| basictabler | Construct Rich Tables for Output to 'HTML'/'Excel' |
| basicTrendline | Add Trendline and Confidence Interval of Basic Regression Models to Plot |
| BASiNET | Classification of RNA Sequences using Complex Network Theory |
| BASIX | BASIX: An efficient C/C++ toolset for R |
| BASS | Bayesian Adaptive Spline Surfaces |
| BaSTA | Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |
| bastah | Big Data Statistical Analysis for High-Dimensional Models |
| BAT | Biodiversity Assessment Tools |
| batade | HTML reports and so on |
| batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |
| BatchExperiments | Statistical Experiments on Batch Computing Clusters |
| BatchGetSymbols | Downloads and Organizes Financial Data for Multiple Tickers |
| BatchJobs | Batch Computing with R |
| BatchMap | Software for the Creation of High Density Linkage Maps in Outcrossing Species |
| batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |
| batchtools | Tools for Computation on Batch Systems |
| BaTFLED3D | Bayesian Tensor Factorization Linked to External Data |
| batman | Convert Categorical Representations of Logicals to Actual Logicals |
| batteryreduction | An R Package for Data Reduction by Battery Reduction |
| BAwiR | Analysis of Basketball Data |
| BayClone2 | Bayesian Feature Allocation Model for Tumor Heterogeneity |
| bayesAB | Fast Bayesian Methods for AB Testing |
| bayesammi | Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model |
| BayesBD | Bayesian Inference for Image Boundaries |
| BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |
| bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |
| bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |
| bayesCL | Bayesian Inference on a GPU using OpenCL |
| BayesCombo | Bayesian Evidence Combination |
| BayesComm | Bayesian Community Ecology Analysis |
| bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |
| BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |
| BayesCTDesign | Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data |
| BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |
| bayesDccGarch | The Bayesian Dynamic Conditional Correlation GARCH Model |
| BAYESDEF | Bayesian Analysis of DSD |
| bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |
| bayesdfa | Bayesian Dynamic Factor Analysis (DFA) with 'Stan' |
| bayesDP | Tools for the Bayesian Discount Prior Function |
| BayesESS | Determining Effective Sample Size |
| BayesFactor | Computation of Bayes Factors for Common Designs |
| BayesFM | Bayesian Inference for Factor Modeling |
| bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |
| bayesGDS | Scalable Rejection Sampling for Bayesian Hierarchical Models |
| BayesGESM | Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models |
| BayesGOF | Bayesian Modeling via Frequentist Goodness-of-Fit |
| BayesH | Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior |
| BayesianAnimalTracker | Bayesian Melding of GPS and DR Path for Animal Tracking |
| Bayesianbetareg | Bayesian Beta regression: joint mean and precision modeling |
| bayesianETAS | Bayesian Estimation of the ETAS Model for Earthquake Occurrences |
| BayesianGLasso | Bayesian Graphical Lasso |
| BayesianNetwork | Bayesian Network Modeling and Analysis |
| BayesianTools | General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics |
| bayesImageS | Bayesian Methods for Image Segmentation using a Potts Model |
| BayesLCA | Bayesian Latent Class Analysis |
| bayesLife | Bayesian Projection of Life Expectancy |
| bayeslm | Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors |
| bayesloglin | Bayesian Analysis of Contingency Table Data |
| bayeslongitudinal | Adjust Longitudinal Regression Models Using Bayesian Methodology |
| bayesLopod | Bayesian Inference of Landscape Occupancy from Presence-Only Data |
| bayesm | Bayesian Inference for Marketing/Micro-Econometrics |
| BayesMallows | Bayesian Preference Learning with the Mallows Rank Model |
| BayesMAMS | Designing Bayesian Multi-Arm Multi-Stage Studies |
| BayesMed | Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation |
| bayesmeta | Bayesian Random-Effects Meta-Analysis |
| bayesmix | Bayesian Mixture Models with JAGS |
| BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |
| BayesNetBP | Bayesian Network Belief Propagation |
| BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |
| BayesPieceHazSelect | Variable Selection in a Hierarchical Bayesian Model for a Hazard Function |
| BayesPiecewiseICAR | Hierarchical Bayesian Model for a Hazard Function |
| bayesplot | Plotting for Bayesian Models |
| bayesPop | Probabilistic Population Projection |
| bayespref | Hierarchical Bayesian analysis of ecological count data |
| bayesQR | Bayesian Quantile Regression |
| BayesRS | Bayes Factors for Hierarchical Linear Models with Continuous Predictors |
| bayess | Bayesian Essentials with R |
| BayesS5 | Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) |
| BayesSAE | Bayesian Analysis of Small Area Estimation |
| BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |
| BayesSpec | Bayesian Spectral Analysis Techniques |
| BayesSummaryStatLM | MCMC Sampling of Bayesian Linear Models via Summary Statistics |
| bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
| bayesTFR | Bayesian Fertility Projection |
| BayesTree | Bayesian Additive Regression Trees |
| BayesTreePrior | Bayesian Tree Prior Simulation |
| BayesTwin | Bayesian Analysis of Item-Level Twin Data |
| BayesValidate | BayesValidate Package |
| BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |
| BayesX | R Utilities Accompanying the Software Package BayesX |
| BayesXsrc | R Package Distribution of the BayesX C++ Sources |
| BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |
| BayHaz | R Functions for Bayesian Hazard Rate Estimation |
| BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |
| BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating |
| bayou | Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies |
| BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |
| baystability | Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) |
| BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |
| baytrends | Long Term Water Quality Trend Analysis |
| bazar | Miscellaneous Basic Functions |
| BB | Solving and Optimizing Large-Scale Nonlinear Systems |
| bbefkr | Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |
| bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |
| BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |
| BBI | Benthic Biotic Indices Calculation from Composition Data |
| BBmisc | Miscellaneous Helper Functions for B. Bischl |
| bbmle | Tools for General Maximum Likelihood Estimation |
| BBMM | Brownian bridge movement model |
| BBMV | Models for Continuous Traits Evolving in Macroevolutionary Landscapes of any Shape |
| bbo | Biogeography-Based Optimization |
| BBRecapture | Bayesian Behavioural Capture-Recapture Models |
| bbw | Blocked Weighted Bootstrap |
| bc3net | Gene Regulatory Network Inference with Bc3net |
| BCA | Business and Customer Analytics |
| bcaboot | Bias Corrected Bootstrap Confidence Intervals |
| BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |
| BCC1997 | Calculation of Option Prices Based on a Universal Solution |
| BCDating | Business Cycle Dating and Plotting Tools |
| BcDiag | Diagnostics Plots for Bicluster Data |
| BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |
| BCEA | Bayesian Cost Effectiveness Analysis |
| BCEE | The Bayesian Causal Effect Estimation Algorithm |
| BCellMA | B Cell Receptor Somatic Hyper Mutation Analysis |
| bcf | Causal Inference for a Binary Treatment and Continuous Outcome using Bayesian Causal Forests |
| bcgam | Bayesian Constrained Generalised Linear Models |
| BCgee | Bias-Corrected Estimates for Generalized Linear Models for Dependent Data |
| Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |
| Bclim | Bayesian Palaeoclimate Reconstruction from Pollen Data |
| bclust | Bayesian Hierarchical Clustering Using Spike and Slab Models |
| BClustLonG | A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data |
| bcmaps | Map Layers and Spatial Utilities for British Columbia |
| bcp | Bayesian Analysis of Change Point Problems |
| bcpa | Behavioral change point analysis of animal movement |
| bcpmeta | Bayesian Multiple Changepoint Detection Using Metadata |
| BCRA | Breast Cancer Risk Assessment |
| bcRep | Advanced Analysis of B Cell Receptor Repertoire Data |
| bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |
| bcROCsurface | Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests |
| bcrypt | 'Blowfish' Password Hashing Algorithm |
| BCSub | A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) |
| bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |
| bda | Density Estimation for Grouped Data |
| bdDwC | Darwinizer: Darwin Core (DwC) Field Names Standardization |
| bde | Bounded Density Estimation |
| BDgraph | Bayesian Structure Learning in Graphical Models using Birth-Death MCMC |
| bdlp | Transparent and Reproducible Artificial Data Generation |
| bdots | Bootstrapped Differences of Time Series |
| BDP2 | Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint |
| bdpopt | Optimisation of Bayesian Decision Problems |
| bdpv | Inference and design for predictive values in binary diagnostic tests |
| bdribs | Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data |
| bdscale | Remove Weekends and Holidays from ggplot2 Axes |
| bdsmatrix | Routines for Block Diagonal Symmetric Matrices |
| bdvis | Biodiversity Data Visualizations |
| BDWreg | Bayesian Inference for Discrete Weibull Regression |
| bdynsys | Bayesian Dynamical System Model |
| BE | Bioequivalence Study Data Analysis |
| bea.R | Bureau of Economic Analysis API |
| BEACH | Biometric Exploratory Analysis Creation House |
| beadarrayFilter | Bead filtering for Illumina bead arrays |
| beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |
| beadplexr | Analysis of Multiplex Cytometric Bead Assays |
| beam | Fast Bayesian Inference in Large Gaussian Graphical Models |
| beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |
| beanz | Bayesian Analysis of Heterogeneous Treatment Effect |
| beast | Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series |
| BEDASSLE | Quantifies effects of geo/eco distance on genetic differentiation |
| BEDMatrix | Extract Genotypes from a PLINK .bed File |
| bedr | Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' |
| beepr | Easily Play Notification Sounds on any Platform |
| beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |
| beezdemand | Behavioral Economic Easy Demand |
| beginr | Functions for R Beginners |
| behaviorchange | Tools for Behavior Change Researchers and Professionals |
| behavr | Canonical Data Structure for Behavioural Data |
| belex | Download Historical Data from the Belgrade Stock Exchange |
| belg | Boltzmann Entropy of a Landscape Gradient |
| bench | High Precision Timing of R Expressions |
| benchden | 28 benchmark densities from Berlinet/Devroye (1994) |
| Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |
| benchmarkme | Crowd Sourced System Benchmarks |
| benchmarkmeData | Data Set for the 'benchmarkme' Package |
| benchr | High Precise Measurement of R Expressions Execution Time |
| benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |
| BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |
| bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |
| benthos | Marine Benthic Ecosystem Analysis |
| BEQI2 | Benthic Ecosystem Quality Index 2 |
| ber | Batch Effects Removal |
| Bergm | Bayesian Exponential Random Graph Models |
| berryFunctions | Function Collection Related to Plotting and Hydrology |
| BeSS | Best Subset Selection in Linear, Logistic and CoxPH Models |
| Bessel | Bessel – Bessel Functions Computations and Approximations |
| BEST | Bayesian Estimation Supersedes the t-Test |
| bestglm | Best Subset GLM and Regression Utilities |
| bestNormalize | Normalizing Transformation Functions |
| BetaBit | Mini Games from Adventures of Beta and Bit |
| betaboost | Boosting Beta Regression |
| betacal | Beta Calibration |
| betafam | Detecting rare variants for quantitative traits using nuclear families |
| betalink | Beta-Diversity of Species Interactions |
| betapart | Partitioning Beta Diversity into Turnover and Nestedness Components |
| betaper | Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |
| betareg | Beta Regression |
| betas | Standardized Beta Coefficients |
| betategarch | Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models |
| bethel | Bethel's algorithm |
| BETS | Brazilian Economic Time Series |
| BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disease |
| beyondWhittle | Bayesian Spectral Inference for Stationary Time Series |
| bezier | Bezier Curve and Spline Toolkit |
| bfa | Bayesian Factor Analysis |
| bfast | Breaks For Additive Season and Trend (BFAST) |
| bfp | Bayesian Fractional Polynomials |
| bfw | Bayesian Framework for Computational Modeling |
| BGData | A Suite of Packages for Analysis of Big Genomic Data |
| bgeva | Binary Generalized Extreme Value Additive Models |
| BGGE | Bayesian Genomic Linear Models Applied to GE Genome Selection |
| BGLR | Bayesian Generalized Linear Regression |
| bgmfiles | Example BGM Files for the Atlantis Ecosystem Model |
| bgmm | Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling |
| BGPhazard | Markov Beta and Gamma Processes for Modeling Hazard Rates |
| BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |
| bgsmtr | Bayesian Group Sparse Multi-Task Regression |
| BH | Boost C++ Header Files |
| Bhat | General likelihood exploration |
| BHH2 | Useful Functions for Box, Hunter and Hunter II |
| bhm | Biomarker Threshold Models |
| BHMSMAfMRI | Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI Data |
| bhrcr | Bayesian Hierarchical Regression on Clearance Rates in the Presence of Lag and Tail Phases |
| BHTSpack | Bayesian Multi-Plate High-Throughput Screening of Compounds |
| biasbetareg | Bias correction of the parameter estimates of the beta regression model |
| BiasedUrn | Biased Urn Model Distributions |
| bib2df | Parse a BibTeX File to a data.frame |
| BiBitR | R Wrapper for Java Implementation of BiBit |
| bibliometrix | An R-Tool for Comprehensive Science Mapping Analysis |
| BibPlots | Plot Functions for Use in Bibliometrics |
| bibtex | Bibtex Parser |
| biclust | BiCluster Algorithms |
| BICORN | Integrative Inference of De Novo Cis-Regulatory Modules |
| BiDAG | Bayesian Inference for Directed Acyclic Graphs (BiDAG) |
| BiDimRegression | Calculates the Bidimensional Regression Between Two 2D Configurations |
| BIEN | Tools for Accessing the Botanical Information and Ecology Network Database |
| bife | Binary Choice Models with Fixed Effects |
| BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |
| BiG | Bayesian Aggregation in Genomic Applications |
| bigalgebra | BLAS routines for native R matrices and big.matrix objects |
| biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |
| bigchess | Read, Manipulate and Explore Chess PGN Files |
| bigdatadist | Distances for Machine Learning and Statistics in the Context of Big Data |
| BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |
| bigFastlm | Fast Linear Models for Objects from the 'bigmemory' Package |
| bigGP | Distributed Gaussian Process Calculations |
| bigIntegerAlgos | R Tool for Factoring Big Integers |
| bigKRLS | Optimized Kernel Regularized Least Squares |
| BIGL | Biochemically Intuitive Generalized Loewe Model |
| biglars | Scalable Least-Angle Regression and Lasso |
| biglasso | Extending Lasso Model Fitting to Big Data |
| bigleaf | Physical and Physiological Ecosystem Properties from Eddy Covariance Data |
| biglm | bounded memory linear and generalized linear models |
| biglmm | Bounded Memory Linear and Generalized Linear Models |
| bigmatch | Making Optimal Matching Size-Scalable Using Optimal Calipers |
| bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |
| bigmemory.sri | A shared resource interface for Bigmemory Project packages |
| bigml | Bindings for the BigML API |
| bigQueryR | Interface with Google BigQuery with Shiny Compatibility |
| BigQuic | Big Quadratic Inverse Covariance Estimation |
| bigreadr | Read Large Text Files |
| bigReg | Generalized Linear Models (GLM) for Large Data Sets |
| bigrquery | An Interface to Google's 'BigQuery' 'API' |
| BigSEM | Constructing Large Systems of Structural Equations |
| bigsplines | Smoothing Splines for Large Samples |
| bigstatsr | Statistical Tools for Filebacked Big Matrices |
| bigstep | Stepwise Selection for Large Data Sets |
| bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |
| bigtcr | Nonparametric Analysis of Bivariate Gap Time with Competing Risks |
| bigtime | Sparse Estimation of Large Time Series Models |
| BigTSP | Top Scoring Pair based methods for classification |
| BigVAR | Dimension Reduction Methods for Multivariate Time Series |
| bikedata | Download and Aggregate Data from Public Hire Bicycle Systems |
| bikeshare14 | Bay Area Bike Share Trips in 2014 |
| bild | BInary Longitudinal Data |
| billboard | Contains Data of Billboard Hot 100 Songs |
| billboarder | Create Interactive Chart with the JavaScript 'Billboard' Library |
| bimetallic | Power for SNP analyses using silver standard cases |
| bimixt | Estimates Mixture Models for Case-Control Data |
| BimodalIndex | The Bimodality Index |
| Binarize | Binarization of One-Dimensional Data |
| BinarybalancedCut | Threshold Cut Point of Probability for a Binary Classifier Model |
| BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |
| BinaryEPPM | Mean and Variance Modeling of Binary Data |
| binaryGP | Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response |
| binaryLogic | Binary Logic |
| binb | 'binb' is not 'Beamer' |
| BINCOR | Estimate the Correlation Between Two Irregular Time Series |
| binda | Multi-Class Discriminant Analysis using Binary Predictors |
| bindata | Generation of Artificial Binary Data |
| bindr | Parametrized Active Bindings |
| bindrcpp | An 'Rcpp' Interface to Active Bindings |
| binequality | Methods for Analyzing Binned Income Data |
| binford | Binford's Hunter-Gatherer Data |
| bingat | Binary Graph Analysis Tools |
| binGroup | Evaluation and Experimental Design for Binomial Group Testing |
| binhf | Haar-Fisz Functions for Binomial Data |
| binman | A Binary Download Manager |
| binMto | Many-to-One Comparisons of Proportions |
| binnednp | Nonparametric Estimation for Interval-Grouped Data |
| binneR | Spectral Processing for High Resolution Flow Infusion Mass Spectrometry |
| BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |
| BinNor | Simultaneous Generation of Multivariate Binary and Normal Variates |
| binom | Binomial Confidence Intervals For Several Parameterizations |
| binomen | 'Taxonomic' Specification and Parsing Methods |
| binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |
| binomlogit | Efficient MCMC for Binomial Logit Models |
| binomSamSize | Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling |
| BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |
| BinQuasi | Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood |
| binr | Cut Numeric Values into Evenly Distributed Groups |
| binseqtest | Exact Binary Sequential Designs and Analysis |
| binsmooth | Generate PDFs and CDFs from Binned Data |
| binst | Data Preprocessing, Binning for Classification and Regression |
| bio.infer | Predict environmental conditions from biological observations |
| bio3d | Biological Structure Analysis |
| bioacoustics | Analyse Audio Recordings and Automatically Extract Animal Vocalizations |
| BioCircos | Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' |
| BiocManager | Access the Bioconductor Project Package Repository |
| Biocomb | Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |
| Biodem | Biodemography Functions |
| BiodiversityR | Package for Community Ecology and Suitability Analysis |
| BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |
| biofiles | An Interface for GenBank/GenPept Flat Files |
| BioFTF | Biodiversity Assessment Using Functional Tools |
| biogas | Process Biogas Data and Predict Biogas Production |
| biogeo | Point Data Quality Assessment and Coordinate Conversion |
| BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |
| biogram | N-Gram Analysis of Biological Sequences |
| Biograph | Explore Life Histories |
| Bioi | Biological Image Analysis |
| bioimagetools | Tools for Microscopy Imaging |
| bioinactivation | Simulation of Dynamic Microbial Inactivation |
| BioInstaller | Integrator of Bioinformatics Resources |
| biolink | Create Hyperlinks to Biological Databases and Resources |
| Biolinv | Modelling and Forecasting Biological Invasions |
| BIOM.utils | Utilities for the BIOM (Biological Observation Matrix) Format |
| BioMark | Find Biomarkers in Two-Class Discrimination Problems |
| biomartr | Genomic Data Retrieval |
| BIOMASS | Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests |
| biomod2 | Ensemble Platform for Species Distribution Modeling |
| bionetdata | Biological and chemical data networks |
| bioOED | Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation |
| BioPET | Biomarker Prognostic Enrichment Tool |
| bioplots | Visualization of Overlapping Results with Heatmap |
| bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |
| Bios2cor | From Biological Sequences and Simulations to Correlation Analysis |
| bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |
| bioset | Convert a Matrix of Raw Values into Nice and Tidy Data |
| biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |
| BioStatR | Initiation àla Statistique avec R |
| biotic | Calculation of Freshwater Biotic Indices |
| biotools | Tools for Biometry and Applied Statistics in Agricultural Science |
| bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |
| biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |
| BiplotGUI | Interactive Biplots in R |
| birdnik | Connector for the Wordnik API |
| birdring | Methods to Analyse Ring Re-Encounter Data |
| birk | MA Birk's Functions |
| birtr | The R Package for "The Basics of Item Response Theory Using R" |
| BIS | Programmatic Access to Bank for International Settlements Data |
| bisect | Estimating Cell Type Composition from Methylation Sequencing Data |
| bisectr | Tools to find bad commits with git bisect |
| BiSEp | Toolkit to Identify Candidate Synthetic Lethality |
| bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |
| BisRNA | Analysis of RNA Cytosine-5 Methylation |
| bit | A Class for Vectors of 1-Bit Booleans |
| bit64 | A S3 Class for Vectors of 64bit Integers |
| bitops | Bitwise Operations |
| BiTrinA | Binarization and Trinarization of One-Dimensional Data |
| bitrugs | Bayesian Inference of Transmission Routes Using Genome Sequences |
| bivariate | Bivariate Probability Distributions |
| Bivariate.Pareto | Bivariate Pareto Models |
| BivarP | Estimating the Parameters of Some Bivariate Distributions |
| bivarRIpower | Sample size calculations for bivariate longitudinal data |
| BivGeo | Basu-Dhar Bivariate Geometric Distribution |
| BivRegBLS | Tolerance Intervals and Errors-in-Variables Regressions in Method Comparison Studies |
| bivrp | Bivariate Residual Plots with Simulation Polygons |
| BivUnifBin | Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data |
| biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |
| biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |
| bizdays | Business Days Calculations and Utilities |
| bjscrapeR | An API Wrapper for the Bureau of Justice Statistics (BJS) |
| bkmr | Bayesian Kernel Machine Regression |
| BKPC | Bayesian Kernel Projection Classifier |
| blackbox | Black Box Optimization and Exploration of Parameter Space |
| BlakerCI | Blaker's Binomial Confidence Limits |
| BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |
| blandr | Bland-Altman Method Comparison |
| blastula | Easily Send HTML Email Messages |
| blatr | Send Emails Using 'Blat' for Windows |
| Blaunet | Calculate and Analyze Blau Status for (Covert) Organizations |
| blavaan | Bayesian Latent Variable Analysis |
| BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |
| blendedLink | A New Link Function that Blends Two Specified Link Functions |
| blender | Analyze biotic homogenization of landscapes |
| Blendstat | Joint Analysis of Experiments with Mixtures and Random Effects |
| blin | Bipartite Longitudinal Influence Network (BLIN) Estimation |
| blink | Record Linkage for Empirically Motivated Priors |
| blkbox | Data Exploration with Multiple Machine Learning Algorithms |
| blm | Binomial linear and linear-expit regression |
| blme | Bayesian Linear Mixed-Effects Models |
| blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |
| BLModel | Black-Litterman Posterior Distribution |
| blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |
| blockcluster | Co-clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |
| BlockCov | Estimation of Large Block Covariance Matrices |
| BlockFeST | Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation |
| blockingChallenge | Create Blocks or Strata which are Similar Within |
| blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |
| BlockMessage | Creates strings that show a text message in 8 by 8 block letters |
| blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |
| blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |
| blockrand | Randomization for block random clinical trials |
| blocksdesign | Nested and Crossed Block Designs for Factorial, Fractional Factorial and Unstructured Treatment Sets |
| blockseg | Two Dimensional Change-Points Detection |
| blockTools | Block, Assign, and Diagnose Potential Interference in Randomized Experiments |
| blogdown | Create Blogs and Websites with R Markdown |
| BLOQ | Impute and Analyze Data with Observations Below the Limit of Quantification |
| blorr | Tools for Developing Binary Logistic Regression Models |
| BLPestimatoR | Performs a BLP Demand Estimation |
| BLR | Bayesian Linear Regression |
| BLRPM | Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model |
| blsAPI | Request Data from the U.S. Bureau of Labor Statistics API |
| BLSM | Bayesian Latent Space Model |
| BMA | Bayesian Model Averaging |
| BMAmevt | Multivariate Extremes: Bayesian Estimation of the Spectral Measure |
| bmd | Benchmark dose analysis for dose-response data |
| bmem | Mediation analysis with missing data using bootstrap |
| bmeta | Bayesian Meta-Analysis and Meta-Regression |
| BMhyb | Hybrid Trait Evolution under Brownian Motion |
| BMhyd | PCM for Hybridization |
| BMisc | Miscellaneous Functions for Panel Data, Quantiles, and Printing Results |
| Bmix | Bayesian Sampling for Stick-Breaking Mixtures |
| bmixture | Bayesian Estimation for Finite Mixture of Distributions |
| bmk | MCMC diagnostics package |
| bmlm | Bayesian Multilevel Mediation |
| bmmix | Bayesian multinomial mixture |
| bmotif | Counting Motifs in Bipartite Networks |
| bmp | Read Windows Bitmap (BMP) Images |
| BMRBr | 'BMRB' File Downloader |
| bmrm | Bundle Methods for Regularized Risk Minimization Package |
| BMRV | Bayesian Models for Rare Variant Association Analysis |
| BMS | Bayesian Model Averaging Library |
| BMSC | Bayesian Model Selection under Constraints |
| BMT | The BMT Distribution |
| bnclassify | Learning Discrete Bayesian Network Classifiers from Data |
| BNDataGenerator | Data Generator based on Bayesian Network Model |
| bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |
| BNN | Bayesian Neural Network for High-Dimensional Nonlinear Variable Selection |
| bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |
| bnormnlr | Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models |
| BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |
| BNPMediation | Bayesian Nonparametric Method for Mediation |
| BNPMIXcluster | Bayesian Nonparametric Model for Clustering with Mixed Scale Variables |
| bnpmr | Bayesian Monotonic Nonparametric Regression |
| bnpsd | Simulate Genotypes from the BN-PSD Admixture Model |
| BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |
| BNSL | Bayesian Network Structure Learning |
| BNSP | Bayesian Non- And Semi-Parametric Model Fitting |
| bnspatial | Spatial Implementation of Bayesian Networks and Mapping |
| bnstruct | Bayesian Network Structure Learning from Data with Missing Values |
| bnviewer | Interactive Visualization of Bayesian Networks |
| boa | Bayesian Output Analysis Program (BOA) for MCMC |
| BoardGames | Board Games and Tools for Building Board Games |
| bodenmiller | Profilling of Peripheral Blood Mononuclear Cells using CyTOF |
| BOG | Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions |
| boilerpipeR | Interface to the Boilerpipe Java Library |
| BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |
| bold | Interface to Bold Systems API |
| Bolstad | Functions for Elementary Bayesian Inference |
| Bolstad2 | Bolstad functions |
| BoltzMM | Boltzmann Machines with MM Algorithms |
| bomrang | Australian Government Bureau of Meteorology (BOM) Data from R |
| BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |
| bookdown | Authoring Books and Technical Documents with R Markdown |
| bookdownplus | Generate Assorted Books and Documents with R 'bookdown' Package |
| BoolFilter | Optimal Estimation of Partially Observed Boolean Dynamical Systems |
| BoolNet | Construction, Simulation and Analysis of Boolean Networks |
| Boom | Bayesian Object Oriented Modeling |
| BoomSpikeSlab | MCMC for Spike and Slab Regression |
| boostmtree | Boosted Multivariate Trees for Longitudinal Data |
| boostr | A modular framework to bag or boost any estimation procedure |
| boostSeq | Optimized GWAS cohort subset selection for resequencing studies |
| boot | Bootstrap Functions (Originally by Angelo Canty for S) |
| bootcluster | Bootstrapping Estimates of Clustering Stability |
| bootES | Bootstrap Effect Sizes |
| bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |
| BootMRMR | Bootstrap-MRMR Technique for Informative Gene Selection |
| bootnet | Bootstrap Methods for Various Network Estimation Routines |
| BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
| bootRes | Bootstrapped Response and Correlation Functions |
| bootruin | A Bootstrap Test for the Probability of Ruin in the Classical Risk Process |
| bootspecdens | Testing equality of spectral densities |
| bootsPLS | Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification |
| bootStepAIC | Bootstrap stepAIC |
| bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
| BootstrapQTL | Bootstrap cis-QTL Method that Corrects for the Winner's Curse |
| bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |
| boottol | Bootstrap Tolerance Levels for Credit Scoring Validation Statistics |
| BootValidation | Adjusting for Optimism in 'glmnet' Regression using Bootstrapping |
| BootWPTOS | Test Stationarity using Bootstrap Wavelet Packet Tests |
| bor | Transforming Behavioral Observation Records into Data Matrices |
| boral | Bayesian Ordination and Regression AnaLysis |
| Boruta | Wrapper Algorithm for All Relevant Feature Selection |
| BosonSampling | Classical Boson Sampling |
| BoSSA | A Bunch of Structure and Sequence Analysis |
| bossMaps | Convert Binary Species Range Maps into Continuous Surfaces Based on Distance to Range Edge |
| boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |
| BoutrosLab.plotting.general | Create Publication-Quality Plots |
| boxcoxmix | Box-Cox-Type Transformations for Linear and Logistic Models with Random Effects |
| boxoffice | Downloads Box Office Information for Given Dates |
| boxplotdbl | Double Box Plot for Two-Axes Correlation |
| boxr | Interface for the 'Box.com API' |
| bpa | Basic Pattern Analysis |
| bpca | Biplot of Multivariate Data Based on Principal Components Analysis |
| bpcp | Beta Product Confidence Procedure for Right Censored Data |
| bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |
| BPEC | Bayesian Phylogeographic and Ecological Clustering |
| bpkde | Back-Projected Kernel Density Estimation |
| bpnreg | Bayesian Projected Normal Regression Models for Circular Data |
| bpp | Computations Around Bayesian Predictive Power |
| bqtl | Bayesian QTL Mapping Toolkit |
| BradleyTerry2 | Bradley-Terry Models |
| BradleyTerryScalable | Fits the Bradley-Terry Model to Potentially Large and Sparse Networks of Comparison Data |
| braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |
| braidrm | Fitting Dose Response with the BRAID Combined Action Model |
| BrailleR | Improved Access for Blind Users |
| brainGraph | Graph Theory Analysis of Brain MRI Data |
| brainKCCA | Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis |
| brainR | Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging |
| brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |
| Branching | Simulation and Estimation for Branching Processes |
| brandwatchR | 'Brandwatch' API to R |
| brant | Test for Parallel Regression Assumption |
| braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |
| brazilmaps | Brazilian Maps from Different Geographic Levels |
| brea | Bayesian Recurrent Event Analysis |
| breakage | SICM pipette tip geometry estimation |
| breakaway | Species Richness Estimation and Modeling |
| breakDown | Model Agnostic Explainers for Individual Predictions |
| breakfast | Multiple Change-Point Detection and Segmentation |
| breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |
| breathtestcore | Core Functions to Read and Fit 13c Time Series from Breath Tests |
| breathteststan | Stan-Based Fit to Gastric Emptying Curves |
| BreedingSchemeLanguage | Describe and Simulate Breeding Schemes |
| bReeze | Functions for Wind Resource Assessment |
| BRETIGEA | Brain Cell Type Specific Gene Expression Analysis |
| brew | Templating Framework for Report Generation |
| brglm | Bias Reduction in Binomial-Response Generalized Linear Models |
| brglm2 | Bias Reduction in Generalized Linear Models |
| bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |
| bridger2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data |
| bridgesampling | Bridge Sampling for Marginal Likelihoods and Bayes Factors |
| BRISC | Fast Inference for Large Spatial Datasets using BRISC |
| briskaR | Biological Risk Assessment |
| brlrmr | Bias Reduction with Missing Binary Response |
| brm | Binary Regression Model |
| brms | Bayesian Regression Models using 'Stan' |
| brnn | Bayesian Regularization for Feed-Forward Neural Networks |
| Brobdingnag | Very Large Numbers in R |
| broman | Karl Broman's R Code |
| broom | Convert Statistical Analysis Objects into Tidy Tibbles |
| broom.mixed | Tidying Methods for Mixed Models |
| brotli | A Compression Format Optimized for the Web |
| BrownDog | Brown Dog R Interface |
| Brq | Bayesian Analysis of Quantile Regression Models |
| brr | Bayesian Inference on the Ratio of Two Poisson Rates |
| brranching | Fetch 'Phylogenies' from Many Sources |
| brt | Biological Relevance Testing |
| BRugs | Interface to the 'OpenBUGS' MCMC Software |
| Brundle | Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data |
| bs4Dash | A 'Bootstrap 4' Version of 'shinydashboard' |
| BSagri | Safety Assessment in Agricultural Field Trials |
| bsam | Bayesian State-Space Models for Animal Movement |
| bsamGP | Bayesian Spectral Analysis Models using Gaussian Process Priors |
| BSDA | Basic Statistics and Data Analysis |
| bsearchtools | Binary Search Tools |
| BSGS | Bayesian Sparse Group Selection |
| BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |
| bshazard | Nonparametric Smoothing of the Hazard Function |
| BSL | Bayesian Synthetic Likelihood with Graphical Lasso |
| BsMD | Bayes Screening and Model Discrimination |
| BSPADATA | Bayesian Proposal to Fit Spatial Econometric Models |
| bspec | Bayesian Spectral Inference |
| bsplinePsd | Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors |
| bsplus | Adds Functionality to the R Markdown + Shiny Bootstrap Framework |
| bspmma | bspmma: Bayesian Semiparametric Models for Meta-Analysis |
| BSquare | Bayesian Simultaneous Quantile Regression |
| BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |
| bssm | Bayesian Inference of Non-Linear and Non-Gaussian State Space Models |
| bssn | Birnbaum-Saunders Model Based on Skew-Normal Distribution |
| bst | Gradient Boosting |
| bsts | Bayesian Structural Time Series |
| btb | Beyond the Border - Kernel Density Estimation for Urban Geography |
| BTdecayLasso | Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso |
| btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |
| BTLLasso | Modelling Heterogeneity in Paired Comparison Data |
| BTR | Training and Analysing Asynchronous Boolean Models |
| BTSPAS | Bayesian Time-Strat. Population Analysis |
| BTYD | Implementing Buy 'Til You Die Models |
| BTYDplus | Probabilistic Models for Assessing and Predicting your Customer Base |
| bucky | Bucky's Archive for Data Analysis in the Social Sciences |
| BUCSS | Bias and Uncertainty Corrected Sample Size |
| bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |
| bulletr | Algorithms for Matching Bullet Lands |
| BullsEyeR | Topic Modelling |
| bullwhipgame | Bullwhip Effect Demo in Shiny |
| bunchr | Analyze Bunching in a Kink or Notch Setting |
| bundesligR | All Final Tables of the Bundesliga |
| bupaR | Business Process Analysis in R |
| burnr | Fire-History Analysis in R |
| BurStFin | Burns Statistics Financial |
| BurStMisc | Burns Statistics Miscellaneous |
| bursts | Markov model for bursty behavior in streams |
| BusinessDuration | Calculates Business Duration Between Two Dates |
| BuyseTest | Generalized Pairwise Comparisons |
| bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |
| bvenn | A Simple alternative to proportional Venn diagrams |
| bvls | The Stark-Parker algorithm for bounded-variable least squares |
| bvpSolve | Solvers for Boundary Value Problems of Differential Equations |
| BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |
| BVSNLP | Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors |
| bWGR | Bayesian Whole-Genome Regression |
| BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |
| bytescircle | Statistics About Bytes Contained in a File as a Circle Plot |
| c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |
| c212 | Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |
| c2c | Compare Two Classifications or Clustering Solutions of Varying Structure |
| c3 | 'C3.js' Chart Library |
| c3net | Infering large-scale gene networks with C3NET |
| C443 | See a Forest for the Trees |
| C50 | C5.0 Decision Trees and Rule-Based Models |
| ca | Simple, Multiple and Joint Correspondence Analysis |
| CA3variants | Three-Way Correspondence Analysis Variants |
| cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis |
| cacIRT | Classification Accuracy and Consistency under Item Response Theory |
| CaDENCE | Conditional Density Estimation Network Construction and Evaluation |
| CADFtest | A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests |
| CADStat | Provides a GUI to Several Statistical Methods |
| caesar | Encrypts and Decrypts Strings |
| caffsim | Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model |
| cAIC4 | Conditional Akaike Information Criterion for 'lme4' |
| CAinterprTools | Graphical Aid in Correspondence Analysis Interpretation and Significance Testings |
| Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |
| cairoDevice | Embeddable Cairo Graphics Device Driver |
| CAISEr | Comparison of Algorithms with Iterative Sample Size Estimation |
| calACS | Calculations for All Common Subsequences |
| Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |
| CALF | Coarse Approximation Linear Function |
| CALIBERrfimpute | Multiple Imputation Using MICE and Random Forest |
| calibrar | Automated Parameter Estimation for Complex (Ecological) Models |
| calibrate | Calibration of Scatterplot and Biplot Axes |
| calibrateBinary | Calibration for Computer Experiments with Binary Responses |
| CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |
| calibrator | Bayesian calibration of complex computer codes |
| CalibratR | Mapping ML Scores to Calibrated Predictions |
| CaliCo | Code Calibration in a Bayesian Framework |
| callr | Call R from R |
| calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |
| calpassapi | R Interface to Access CalPASS API |
| CAM | Causal Additive Model (CAM) |
| CAMAN | Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |
| camsRad | Client for CAMS Radiation Service |
| caMST | Mixed Computerized Adaptive Multistage Testing |
| camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |
| cancensus | Canadian Census Data and Geography from the 'CensusMapper' API |
| cancerGI | Analyses of Cancer Gene Interaction |
| cancerTiming | Estimation of Temporal Ordering of Cancer Abnormalities |
| candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |
| Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |
| canprot | Chemical Composition of Differential Protein Expression |
| CANSIM2R | Directly Extracts Complete CANSIM Data Tables |
| canvasXpress | Visualization Package for CanvasXpress in R |
| cap | Covariate Assisted Principal (CAP) Regression for Covariance Matrix Outcomes |
| cape | Combined Analysis of Pleiotropy and Epistasis |
| caper | Comparative Analyses of Phylogenetics and Evolution in R |
| capm | Companion Animal Population Management |
| capn | Capital Asset Pricing for Nature |
| captioner | Numbers Figures and Creates Simple Captions |
| captr | Client for the Captricity API |
| capushe | CAlibrating Penalities Using Slope HEuristics |
| capwire | Estimates population size from non-invasive sampling |
| car | Companion to Applied Regression |
| caRamel | Automatic Calibration by Evolutionary Multi Objective Algorithm |
| CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |
| CARBayesdata | Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |
| CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |
| carbonate | Interact with 'carbon.js' |
| carcass | Estimation of the Number of Fatalities from Carcass Searches |
| carData | Companion to Applied Regression Data Sets |
| cardidates | Identification of Cardinal Dates in Ecological Time Series |
| cardioModel | Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies |
| care | High-Dimensional Regression and CAR Score Variable Selection |
| CARE1 | Statistical package for population size estimation in capture-recapture models |
| careless | Procedures for Computing Indices of Careless Responding |
| caret | Classification and Regression Training |
| caretEnsemble | Ensembles of Caret Models |
| carfima | Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data |
| caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |
| CarletonStats | Functions for Statistics Classes at Carleton College |
| CARLIT | Ecological Quality Ratios Calculation and Plot |
| caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |
| carpenter | Build Common Tables of Summary Statistics for Reports |
| caRpools | CRISPR AnalyzeR for Pooled CRISPR Screens |
| CARrampsOcl | Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |
| carrier | Isolate Functions for Remote Execution |
| CARRoT | Predicting Categorical and Continuous Outcomes Using One in Ten Rule |
| CARS | Covariate Assisted Ranking and Screening for Large-Scale Two-Sample Inference |
| carSurv | Correlation-Adjusted Regression Survival (CARS) Scores |
| cartogram | Create Cartograms with R |
| cartography | Thematic Cartography |
| cartools | Tools for Understanding Highway Performance |
| carx | Censored Autoregressive Model with Exogenous Covariates |
| caschrono | Séries Temporelles Avec R |
| casebase | Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression |
| CaseBasedReasoning | Case-Based Reasoning |
| caseMatch | Identify Similar Cases for Qualitative Case Studies |
| CASMAP | Detection of Statistically Significant Combinations of SNPs in Association Mapping |
| CAST | 'caret' Applications for Spatial-Temporal Models |
| castor | Efficient Phylogenetics on Large Trees |
| cat | Analysis of categorical-variable datasets with missing values |
| catch | Covariate-Adjusted Tensor Classification in High-Dimensions |
| catcont | Test, Identify, Select and Mutate Categorical or Continuous Values |
| catdap | Categorical Data Analysis Program Package |
| catdata | Categorical Data |
| CatDyn | Fishery Stock Assessment by Generalized Depletion Models |
| cate | High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |
| catenary | Fits a Catenary to Given Points |
| CatEncoders | Encoders for Categorical Variables |
| CateSelection | Categorical Variable Selection Methods |
| cati | Community Assembly by Traits: Individuals and Beyond |
| catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |
| CATkit | Chronomics Analysis Toolkit (CAT): Periodicity Analysis |
| catlearn | Formal Psychological Models of Categorization and Learning |
| catmap | Case-Control and TDT Meta-Analysis Package |
| catnet | Categorical Bayesian Network Inference |
| caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |
| CatPredi | Optimal Categorisation of Continuous Variables in Prediction Models |
| catR | Generation of IRT Response Patterns under Computerized Adaptive Testing |
| catspec | Special models for categorical variables |
| catSurv | Computerized Adaptive Testing for Survey Research |
| CATT | The Cochran-Armitage Trend Test |
| CATTexact | Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test |
| cattonum | Encode Categorical Features |
| causaldrf | Tools for Estimating Causal Dose Response Functions |
| causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |
| CausalFX | Methods for Estimating Causal Effects from Observational Data |
| CausalGAM | Estimation of Causal Effects with Generalized Additive Models |
| CausalImpact | Inferring Causal Effects using Bayesian Structural Time-Series Models |
| causalMGM | Causal Learning of Mixed Graphical Models |
| causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |
| causalweight | Estimation Methods for Causal Inference Based on Inverse Probability Weighting |
| Causata | Analysis utilities for binary classification and Causata users |
| CAvariants | Correspondence Analysis Variants |
| cba | Clustering for Business Analytics |
| cbanalysis | Coffee Break Descriptive Analysis |
| cbar | Contextual Bayesian Anomaly Detection in R |
| CBCgrps | Compare Baseline Characteristics Between Groups |
| CBDA | Compressive Big Data Analytics |
| cbinom | Continuous Analog of a Binomial Distribution |
| cbird | Clustering of Multivariate Binary Data with Dimension Reduction via L1-Regularized Likelihood Maximization |
| CBPS | Covariate Balancing Propensity Score |
| cbsodataR | Statistics Netherlands (CBS) Open Data API Client |
| CBT | Confidence Bound Target Algorithm |
| CCA | Canonical correlation analysis |
| ccafs | Client for 'CCAFS' 'GCM' Data |
| CCAGFA | Bayesian Canonical Correlation Analysis and Group Factor Analysis |
| ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |
| cccd | Class Cover Catch Digraphs |
| ccChooser | Developing a core collections |
| cccp | Cone Constrained Convex Problems |
| cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |
| ccda | Combined Cluster and Discriminant Analysis |
| ccdrAlgorithm | CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks |
| ccfa | Continuous Counterfactual Analysis |
| ccgarch | Conditional Correlation GARCH models |
| cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |
| cclust | Convex Clustering Methods and Clustering Indexes |
| CCM | Correlation Classification Method |
| ccmm | Compositional Mediation Model |
| CCMnet | Simulate Congruence Class Model for Networks |
| CCP | Significance Tests for Canonical Correlation Analysis (CCA) |
| CCpop | One and two locus GWAS of binary phenotype with case-control-population design |
| ccRemover | Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data |
| cctools | Tools for the Continuous Convolution Trick in Nonparametric Estimation |
| CCTpack | Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications |
| cdata | Fluid Data Transformations |
| cdb | Reading and Writing Constant DataBases |
| cdcfluview | Retrieve 'U.S'. Flu Season Data from the 'CDC' 'FluView' Portal |
| cdcsis | Conditional Distance Correlation and Its Related Feature Screening Method |
| CDECRetrieve | Retrieve Historical and Near Realtime Data from CDEC |
| cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |
| CDFt | Statistical downscaling through CDF-transform |
| CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |
| cdlTools | Tools to Download and Work with USDA Cropscape Data |
| CDM | Cognitive Diagnosis Modeling |
| CDNmoney | Components of Canadian Monetary and Credit Aggregates |
| cdom | R Functions to Model CDOM Spectra |
| cdparcoord | Top Frequency-Based Parallel Coordinates |
| CDROM | Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |
| cds | Constrained Dual Scaling for Detecting Response Styles |
| CDVine | Statistical Inference of C- And D-Vine Copulas |
| CDVineCopulaConditional | Sampling from Conditional C- and D-Vine Copulas |
| CEC | Cross-Entropy Clustering |
| cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |
| cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |
| ceg | Chain Event Graph |
| CEGO | Combinatorial Efficient Global Optimization |
| celestial | Collection of Common Astronomical Conversion Routines and Functions |
| cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |
| cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |
| cellWise | Analyzing Data with Cellwise Outliers |
| cem | Coarsened Exact Matching |
| CENFA | Climate and Ecological Niche Factor Analysis |
| cenGAM | Censored Regression with Smooth Terms |
| censCov | Linear Regression with a Randomly Censored Covariate |
| CensMixReg | Censored Linear Mixture Regression Models |
| censNID | censored NID samples |
| censorcopula | Estimate Parameter of Bivariate Copula |
| censReg | Censored Regression (Tobit) Models |
| CensRegMod | Fits Normal and Student-t Censored Regression Model |
| CensSpatial | Censored Spatial Models |
| census | Scrape US Census Data |
| Census2016 | Data from the Australian Census 2016 |
| censusapi | Retrieve Data from the Census APIs |
| censusGeography | Changes United States Census Geographic Code into Name of Location |
| censusr | Collect Data from the Census API |
| censys | Tools to Query the 'Censys' API |
| centiserve | Find Graph Centrality Indices |
| centralplot | Show the Strength of Relationships Between Centre and Peripheral Items |
| cents | Censored time series |
| CEoptim | Cross-Entropy R Package for Optimization |
| CePa | Centrality-Based Pathway Enrichment |
| CepLDA | Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability |
| cepp | Context Driven Exploratory Projection Pursuit |
| cepR | Busca CEPs Brasileiros |
| cepreader | Read 'CEP' and Legacy 'CANOCO' Files |
| CerioliOutlierDetection | Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |
| cernn | Covariance Estimation Regularized by Nuclear Norm Penalties |
| cetcolor | CET Perceptually Uniform Colour Maps |
| ceterisParibus | Ceteris Paribus Profiles |
| cfa | Configural Frequency Analysis (CFA) |
| CFC | Cause-Specific Framework for Competing-Risk Analysis |
| CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |
| cffdrs | Canadian Forest Fire Danger Rating System |
| cfma | Causal Functional Mediation Analysis |
| cg | Compare Groups, Analytically and Graphically |
| cgam | Constrained Generalized Additive Model |
| cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |
| cgdsr | R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |
| cgh | Microarray CGH analysis using the Smith-Waterman algorithm |
| cghRA | Array CGH Data Analysis and Visualization |
| cglasso | L1-Penalized Censored Gaussian Graphical Models |
| cgmanalysis | Clean and Analyze Continuous Glucose Monitor Data |
| CGP | Composite Gaussian Process Models |
| CGPfunctions | Powell Miscellaneous Functions for Teaching and Learning Statistics |
| cgraph | Computational Graphs |
| ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |
| chandwich | Chandler-Bate Sandwich Loglikelihood Adjustment |
| changepoint | Methods for Changepoint Detection |
| changepoint.np | Methods for Nonparametric Changepoint Detection |
| changepointsHD | Change-Point Estimation for Expensive and High-Dimensional Models |
| changepointsVar | Change-Points Detections for Changes in Variance |
| ChangepointTesting | Change Point Estimation for Clustered Signals |
| changer | Change R Package Name |
| ChannelAttribution | Markov Model for the Online Multi-Channel Attribution Problem |
| ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |
| Chaos01 | 0-1 Test for Chaos |
| ChaosGame | Chaos Game |
| CharFun | Numerical Computation Cumulative Distribution Function and Probability Density Function from Characteristic Function |
| ChargeTransport | Charge Transfer Rates and Charge Carrier Mobilities |
| charlatan | Make Fake Data |
| CHCN | Canadian Historical Climate Network |
| cheb | Discrete Linear Chebyshev Approximation |
| chebpol | Multivariate Interpolation |
| checkarg | Check the Basic Validity of a (Function) Argument |
| CheckDigit | Calculate and verify check digits |
| checkLuhn | Checks if a Number is Valid Using the Luhn Algorithm |
| checkmate | Fast and Versatile Argument Checks |
| checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |
| checkr | Check the Properties of Common R Objects |
| cheddar | Analysis and Visualisation of Ecological Communities |
| chemCal | Calibration Functions for Analytical Chemistry |
| chemmodlab | A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models |
| chemometrics | Multivariate Statistical Analysis in Chemometrics |
| ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |
| ChemoSpec | Exploratory Chemometrics for Spectroscopy |
| ChemoSpecUtils | Functions Supporting Packages ChemoSpec and ChemoSpec2D |
| cherry | Multiple Testing Methods for Exploratory Research |
| CHFF | Closest History Flow Field Forecasting for Bivariate Time Series |
| chi | The Chi Distribution |
| chi2x3way | Partitioning Chi-Squared and Tau Index for Three-Way Contingency Tables |
| chicane | Capture Hi-C Analysis Engine |
| childesr | Accessing the 'CHILDES' Database |
| childhoodmortality | Calculating Childhood Mortality Rates |
| childsds | Data and Methods Around Reference Values in Pediatrics |
| chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |
| chinese.misc | Miscellaneous Tools for Chinese Text Mining and More |
| chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |
| ChIPtest | Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data |
| CHMM | Coupled Hidden Markov Models |
| chngpt | Estimation and Hypothesis Testing for Threshold Regression |
| CHNOSZ | Thermodynamic Calculations for Geobiochemistry |
| ChocoLattes | Processing Data from Lattes CV Files |
| choiceDes | Design Functions for Choice Studies |
| ChoiceModelR | Choice Modeling in R |
| cholera | Amend, Augment and Aid Analysis of John Snow's Cholera Map |
| CholWishart | Cholesky Decomposition of the Wishart Distribution |
| choplump | Choplump tests |
| chopthin | The Chopthin Resampler |
| ChoR | Chordalysis R Package |
| chords | Estimation in Respondent Driven Samples |
| choroplethr | Simplify the Creation of Choropleth Maps in R |
| choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |
| choroplethrMaps | Contains Maps Used by the 'choroplethr' Package |
| chorrrds | Music Chords Extraction |
| chromer | Interface to Chromosome Counts Database API |
| chromoMap | Interactive Visualization and Mapping of Human Chromosomes |
| chromoR | Analysis of chromosomal interactions data (correction, segmentation and comparison) |
| chron | Chronological Objects which can Handle Dates and Times |
| CHsharp | Choi and Hall Style Data Sharpening |
| chunked | Chunkwise Text-File Processing for 'dplyr' |
| chunkR | Read Tables in Chunks |
| CIAAWconsensus | Isotope Ratio Meta-Analysis |
| CIEE | Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations |
| CIFsmry | Weighted summary of cumulative incidence functions |
| cifti | Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files |
| cin | Causal Inference for Neuroscience |
| CINID | Curculionidae INstar IDentification |
| CINNA | Deciphering Central Informative Nodes in Network Analysis |
| CIplot | Functions to Plot Confidence Interval |
| cir | Centered Isotonic Regression and Dose-Response Utilities |
| circglmbayes | Bayesian Analysis of a Circular GLM |
| circlize | Circular Visualization |
| CircMLE | Maximum Likelihood Analysis of Circular Data |
| CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |
| CircOutlier | Detection of Outliers in Circular-Circular Regression |
| CircStats | Circular Statistics, from "Topics in Circular Statistics" (2001) |
| circular | Circular Statistics |
| CircularDDM | Circular Drift-Diffusion Model |
| circumplex | Analysis and Visualization of Circular Data |
| cIRT | Choice Item Response Theory |
| CISE | Common and Individual Structure Explained for Multiple Graphs |
| cit | Causal Inference Test |
| CITAN | CITation ANalysis Toolpack |
| citbcmst | CIT Breast Cancer Molecular SubTypes Prediction |
| citccmst | CIT Colon Cancer Molecular SubTypes Prediction |
| Cite | An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents |
| ciTools | Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models |
| citr | 'RStudio' Add-in to Insert Markdown Citations |
| CityPlot | Visualization of structure and contents of a database |
| CityWaterBalance | Track Flows of Water Through an Urban System |
| ciuupi | Confidence Intervals Utilizing Uncertain Prior Information |
| civis | R Client for the 'Civis data science API' |
| CJAMP | Copula-Based Joint Analysis of Multiple Phenotypes |
| cjoint | AMCE Estimator for Conjoint Experiments |
| ck37r | Chris Kennedy's R Toolkit |
| ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API' |
| CKLRT | Composite Kernel Machine Regression Based on Likelihood Ratio Test |
| Ckmeans.1d.dp | Optimal and Fast Univariate Clustering |
| CLA | Critical Line Algorithm in Pure R |
| cladoRcpp | C++ Implementations of Phylogenetic Cladogenesis Calculations |
| clam | Classical Age-Depth Modelling of Cores from Deposits |
| clampSeg | Idealisation of Patch Clamp Recordings |
| ClamR | Time Series Modeling for Climate Change Proxies |
| clarifai | Access to Clarifai API |
| class | Functions for Classification |
| ClassComparison | Classes and Methods for "Class Comparison" Problems on Microarrays |
| ClassDiscovery | Classes and Methods for "Class Discovery" with Microarrays or Proteomics |
| classGraph | Construct Graphs of S4 Class Hierarchies |
| classifierplots | Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots |
| classifly | Explore classification models in high dimensions |
| classiFunc | Classification of Functional Data |
| classify | Classification Accuracy and Consistency under IRT models |
| classInt | Choose Univariate Class Intervals |
| classyfire | Robust multivariate classification using highly optimised SVM ensembles |
| classyfireR | R Interface to the ClassyFire RESTful API |
| cld2 | Google's Compact Language Detector 2 |
| cld3 | Google's Compact Language Detector 3 |
| CleanBSequences | Clean Biological Sequences |
| cleandata | To Inspect, Impute, Encode, and Partition Data; and to Keep Track of This Process |
| cleanEHR | The Critical Care Clinical Data Processing Tools |
| cleangeo | Cleaning Geometries from Spatial Objects |
| cleanNLP | A Tidy Data Model for Natural Language Processing |
| cleanr | Helps You to Code Cleaner |
| clere | Simultaneous Variables Clustering and Regression |
| clespr | Composite Likelihood Estimation for Spatial Data |
| clhs | Conditioned Latin Hypercube Sampling |
| cli | Helpers for Developing Command Line Interfaces |
| ClickClust | Model-Based Clustering of Categorical Sequences |
| clickR | Fix Data and Create Report Tables from Different Objects |
| clickstream | Analyzes Clickstreams Based on Markov Chains |
| clifro | Easily Download and Visualise Climate Data from CliFlo |
| CliftLRD | Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series |
| clikcorr | Censoring Data and Likelihood-Based Correlation Estimation |
| climatol | Climate Tools (Series Homogenization and Derived Products) |
| climbeR | Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests |
| ClimClass | Climate Classification According to Several Indices |
| climdex.pcic | PCIC Implementation of Climdex Routines |
| ClimDown | Climate Downscaling Library for Daily Climate Model Output |
| clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |
| climextRemes | Tools for Analyzing Climate Extremes |
| climwin | Climate Window Analysis |
| clinDR | Simulation and Analysis Tools for Clinical Dose Response Modeling |
| clinfun | Clinical Trial Design and Data Analysis Functions |
| ClinicalTrialSummary | Summary Measures for Clinical Trials with Survival Outcomes |
| clinPK | Clinical Pharmacokinetics Toolkit |
| clinsig | Clinical Significance Functions |
| clinUtiDNA | Clinical Utility of DNA Testing |
| clipr | Read and Write from the System Clipboard |
| cliqueMS | Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data |
| clisymbols | Unicode Symbols at the R Prompt |
| CLME | Constrained Inference for Linear Mixed Effects Models |
| clogitboost | Boosting Conditional Logit Model |
| clogitLasso | Sparse Conditional Logistic Regression for Matched Studies |
| clordr | Composite Likelihood Inference for Spatial Ordinal Data with Replications |
| cloudml | Interface to the Google Cloud Machine Learning Platform |
| cloudUtil | Cloud Utilization Plots |
| clpAPI | R Interface to C API of COIN-OR Clp |
| CLSOCP | A smoothing Newton method SOCP solver |
| clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |
| clubSandwich | Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |
| clue | Cluster Ensembles |
| ClueR | Cluster Evaluation |
| clues | Clustering Method Based on Local |
| CluMix | Clustering and Visualization of Mixed-Type Data |
| clusrank | Wilcoxon Rank Sum Test for Clustered Data |
| clust.bin.pair | Statistical Methods for Analyzing Clustered Matched Pair Data |
| clustEff | Clusters of Effects Curves in Quantile Regression Models |
| cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |
| cluster.datasets | Cluster Analysis Data Sets |
| Cluster.OBeu | Cluster Analysis 'OpenBudgets' |
| ClusterBootstrap | Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap |
| clusterCrit | Clustering Indices |
| clusteredinterference | Causal Effects from Observational Studies with Clustered Interference |
| ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |
| clusterfly | Explore clustering interactively using R and GGobi |
| clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |
| clusterGenomics | Identifying clusters in genomics data by recursive partitioning |
| clusterhap | Clustering Genotypes in Haplotypes |
| clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |
| clusterlab | Flexible Gaussian Cluster Simulator |
| clustermq | Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) |
| clusternomics | Integrative Clustering for Heterogeneous Biomedical Datasets |
| clusterPower | Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials |
| ClusterR | Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering |
| ClusterRankTest | Rank Tests for Clustered Data |
| clusterRepro | Reproducibility of Gene Expression Clusters |
| clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |
| clusterSim | Searching for Optimal Clustering Procedure for a Data Set |
| ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |
| clustertend | Check the Clustering Tendency |
| clusteval | Evaluation of Clustering Algorithms |
| ClustGeo | Hierarchical Clustering with Spatial Constraints |
| clustMD | Model Based Clustering for Mixed Data |
| clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |
| ClustMMDD | Variable Selection in Clustering by Mixture Models for Discrete Data |
| ClustOfVar | Clustering of Variables |
| clustRcompaR | Easy Interface for Clustering a Set of Documents and Exploring Group- Based Patterns |
| clustrd | Methods for Joint Dimension Reduction and Clustering |
| clustree | Visualise Clusterings at Different Resolutions |
| clustsig | Significant Cluster Analysis |
| ClustVarLV | Clustering of Variables Around Latent Variables |
| clustvarsel | Variable Selection for Gaussian Model-Based Clustering |
| ClusVis | Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering |
| clv | Cluster Validation Techniques |
| clValid | Validation of Clustering Results |
| cmaes | Covariance Matrix Adapting Evolutionary Strategy |
| cmaesr | Covariance Matrix Adaptation Evolution Strategy |
| CMatching | Matching Algorithms for Causal Inference with Clustered Data |
| CMC | Cronbach-Mesbah Curve |
| cmce | Computer Model Calibration for Deterministic and Stochastic Simulators |
| CMF | Collective matrix factorization |
| CMLS | Constrained Multivariate Least Squares |
| cmm | Categorical Marginal Models |
| cmna | Computational Methods for Numerical Analysis |
| CMPControl | Control Charts for Conway-Maxwell-Poisson Distribution |
| CMplot | Circle Manhattan Plot |
| cmpprocess | Flexible Modeling of Count Processes |
| cmprsk | Subdistribution Analysis of Competing Risks |
| cmprskQR | Analysis of Competing Risks Using Quantile Regressions |
| cmrutils | Misc Functions of the Center for Mathematical Research |
| cmsaf | Tools for CM SAF NetCDF Data |
| cmvnorm | The Complex Multivariate Gaussian Distribution |
| cna | Causal Modeling with Coincidence Analysis |
| cnbdistr | Conditional Negative Binomial Distribution |
| cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |
| CNLTreg | Complex-Valued Wavelet Lifting for Signal Denoising |
| CNLTtsa | Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis |
| cnmlcd | Maximum Likelihood Estimation of a Log-Concave Density Function |
| CNOGpro | Copy Numbers of Genes in prokaryotes |
| CNprep | Pre-process DNA Copy Number (CN) Data for Detection of CN Events |
| CNull | Fast Algorithms for Frequency-Preserving Null Models in Ecology |
| CNVassocData | Example data sets for association analysis of CNV data |
| CNVScope | A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization |
| coala | A Framework for Coalescent Simulation |
| coalescentMCMC | MCMC Algorithms for the Coalescent |
| coalitions | Coalition Probabilities in Multi-Party Democracies |
| coarseDataTools | A Collection of Functions to Help with Analysis of Coarsely Observed Data |
| cobalt | Covariate Balance Tables and Plots |
| cobiclust | Biclustering via Latent Block Model Adapted to Overdispersed Count Data |
| COBRA | Nonlinear Aggregation of Predictors |
| cobs | Constrained B-Splines (Sparse Matrix Based) |
| cocktailApp | 'shiny' App to Discover Cocktails |
| CoClust | Copula Based Cluster Analysis |
| COCONUT | COmbat CO-Normalization Using conTrols (COCONUT) |
| cocor | Comparing Correlations |
| cocoreg | Extract Shared Variation in Collections of Data Sets Using Regression Models |
| cocorresp | Co-Correspondence Analysis Methods |
| cocron | Statistical Comparisons of Two or more Alpha Coefficients |
| coda | Output Analysis and Diagnostics for MCMC |
| coda.base | A Basic Set of Functions for Compositional Data Analysis |
| codadiags | Markov chain Monte Carlo burn-in based on "bridge" statistics |
| cOde | Automated C Code Generation for 'deSolve', 'bvpSolve' and 'Sundials' |
| codebook | Automatic Codebooks from Survey Metadata Encoded in Attributes |
| CodeDepends | Analysis of R Code for Reproducible Research and Code Comprehension |
| codemetar | Generate 'CodeMeta' Metadata for R Packages |
| codep | Multiscale Codependence Analysis |
| codetools | Code Analysis Tools for R |
| codified | Produce Standard/Formalized Demographics Tables |
| CoDiNA | Co-Expression Differential Network Analysis |
| codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |
| codyn | Community Dynamics Metrics |
| coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |
| coefplot | Plots Coefficients from Fitted Models |
| coenocliner | Coenocline Simulation |
| coenoflex | Gradient-Based Coenospace Vegetation Simulator |
| coexist | Species coexistence modeling and analysis |
| cofeatureR | Generate Cofeature Matrices |
| CoFRA | Complete Functional Regulation Analysis |
| coga | Convolution of Gamma Distributions |
| CoImp | Copula Based Imputation Method |
| coin | Conditional Inference Procedures in a Permutation Test Framework |
| coindeskr | Access 'CoinDesk' Bitcoin Price Index API |
| coinmarketcapr | Get Cryptocurrencies Market Cap Prices from Coin Market Cap |
| CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |
| cointmonitoR | Consistent Monitoring of Stationarity and Cointegrating Relationships |
| cointReg | Parameter Estimation and Inference in a Cointegrating Regression |
| colf | Constrained Optimization on Linear Function |
| CollapsABEL | Generalized CDH (GCDH) Analysis |
| CollapseLevels | Collapses Levels, Computes Information Value and WoE |
| collapsibleTree | Interactive Collapsible Tree Diagrams using 'D3.js' |
| collectArgs | Quickly and Neatly Collect Arguments from One Environment to Pass to Another |
| collections | High Performance Container Data Types |
| CollessLike | Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees |
| CollocInfer | Collocation Inference for Dynamic Systems |
| collpcm | Collapsed Latent Position Cluster Model for Social Networks |
| collUtils | Auxiliary Package for Package 'CollapsABEL' |
| colmozzie | Dengue Cases and Climate Variables in Colombo Sri Lanka |
| coloc | Colocalisation Tests of Two Genetic Traits |
| colocalization | Normalized Spatial Intensity Correlation |
| colordistance | Distance Metrics for Image Color Similarity |
| coloredICA | Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis |
| colorednoise | Simulate Temporally Autocorrelated Populations |
| colorfindr | Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images |
| colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |
| colorhcplot | Colorful Hierarchical Clustering Dendrograms |
| colormap | Color Palettes using Colormaps Node Module |
| ColorPalette | Color Palettes Generator |
| colorpatch | Optimized Rendering of Fold Changes and Confidence Values |
| colorr | Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams |
| colorRamps | Builds color tables |
| colorscience | Color Science Methods and Data |
| colorspace | Color Space Manipulation |
| colorSpec | Color Calculations with Emphasis on Spectral Data |
| colortools | Tools for colors in a Hue-Saturation-Value (HSV) color model |
| colourlovers | R Client for the COLOURlovers API |
| colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |
| colourvalues | Assigns Colours to Values |
| colourvision | Colour Vision Models |
| colr | Functions to Select and Rename Data |
| colt | Command-Line Color Themes |
| comato | Analysis of Concept Maps and Concept Landscapes |
| COMBAT | A Combined Association Test for Genes using Summary Statistics |
| COMBIA | Synergy/Antagonism Analyses of Drug Combinations |
| combinat | combinatorics utilities |
| CombinePortfolio | Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |
| CombinePValue | Combine a Vector of Correlated p-values |
| CombinS | Construction Methods of some Series of PBIB Designs |
| combiter | Combinatorics Iterators |
| CombMSC | Combined Model Selection Criteria |
| comclim | Community Climate Statistics |
| cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |
| comf | Functions for Thermal Comfort Research |
| ComICS | Computational Methods for Immune Cell-Type Subsets |
| commandr | Command pattern in R |
| CommEcol | Community Ecology Analyses |
| commentr | Print Nicely Formatted Comments for Use in Script Files |
| CommonJavaJars | Useful Libraries for Building a Java Based GUI under R |
| commonmark | High Performance CommonMark and Github Markdown Rendering in R |
| commonsMath | JAR Files of the Apache Commons Mathematics Library |
| CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |
| CommT | Comparative Phylogeographic Analysis using the Community Tree Framework |
| CommunityCorrelogram | Ecological Community Correlogram |
| comorbidity | Computing Comorbidity Scores |
| Comp2ROC | Compare Two ROC Curves that Intersect |
| compactr | Creates empty plots with compact axis notation |
| compare | Comparing Objects for Differences |
| compareC | Compare Two Correlated C Indices with Right-censored Survival Outcome |
| CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |
| compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |
| compareGroups | Descriptive Analysis by Groups |
| compareODM | comparison of medical forms in CDISC ODM format |
| comparer | Compare Output and Run Time |
| CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |
| comparison | Multivariate likelihood ratio calculation and evaluation |
| CompDist | Multisection Composite Distributions |
| compeir | Event-specific incidence rates for competing risks data |
| compendiumdb | Tools for Retrieval and Storage of Functional Genomics Data |
| comperank | Ranking Methods for Competition Results |
| comperes | Manage Competition Results |
| compete | Analyzing Social Hierarchies |
| CompGLM | Conway-Maxwell-Poisson GLM and Distribution Functions |
| compHclust | Complementary Hierarchical Clustering |
| Compind | Composite Indicators Functions |
| complexity | Calculate the Proportion of Permutations in Line with an Informative Hypothesis |
| complexplus | Functions of Complex or Real Variable |
| complmrob | Robust Linear Regression with Compositional Data as Covariates |
| CompLognormal | Functions for actuarial scientists |
| compoisson | Conway-Maxwell-Poisson Distribution |
| COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |
| Compositional | Compositional Data Analysis |
| compositions | Compositional Data Analysis |
| compound.Cox | Univariate Feature Selection and Compound Covariate for Predicting Survival |
| Compounding | Computing Continuous Distributions |
| CompQuadForm | Distribution Function of Quadratic Forms in Normal Variables |
| CompR | Paired Comparison Data Analysis |
| CompRandFld | Composite-Likelihood Based Analysis of Random Fields |
| compute.es | Compute Effect Sizes |
| comtradr | Interface with the United Nations Comtrade API |
| con2aqi | Calculate the AQI from Pollutant Concentration |
| Conake | Continuous Associated Kernel Estimation |
| concatenate | Human-Friendly Text from Unknown Strings |
| concaveman | A Very Fast 2D Concave Hull Algorithm |
| conclust | Pairwise Constraints Clustering |
| ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |
| concor | Concordance |
| concordance | Product Concordance |
| concreg | Concordance Regression |
| cond | Approximate Conditional Inference for Logistic and Loglinear Models |
| condformat | Conditional Formatting in Data Frames |
| condGEE | Parameter estimation in conditional GEE for recurrent event gap times |
| CondIndTests | Nonlinear Conditional Independence Tests |
| condir | Computation of P Values and Bayes Factors for Conditioning Data |
| conditions | Standardized Conditions for R |
| condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |
| condMVNorm | Conditional Multivariate Normal Distribution |
| CONDOP | Condition-Dependent Operon Predictions |
| CondReg | Condition Number Regularized Covariance Estimation |
| condSURV | Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |
| condusco | Query-Driven Pipeline Execution and Query Templates |
| condvis | Conditional Visualization for Statistical Models |
| coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |
| conf | Visualization and Analysis of Statistical Measures of Confidence |
| conf.design | Construction of factorial designs |
| confidence | Confidence Estimation of Environmental State Classifications |
| config | Manage Environment Specific Configuration Values |
| ConfigParser | Package to Parse an INI File, Including Variable Interpolation |
| configr | An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML) |
| confinterpret | Descriptive Interpretations of Confidence Intervals |
| conflicted | An Alternative Conflict Resolution Strategy |
| conformalClassification | Transductive and Inductive Conformal Predictions for Classification Problems |
| ConfoundedMeta | Sensitivity Analyses for Unmeasured Confounding in Meta-Analyses |
| confreq | Configural Frequencies Analysis Using Log-Linear Modeling |
| confSAM | Estimates and Bounds for the False Discovery Proportion, by Permutation |
| congressbr | Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies |
| conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |
| conics | Plot Conics |
| Conigrave | Flexible Tools for Multiple Imputation |
| conjoint | An Implementation of Conjoint Analysis Method |
| ConjointChecks | A package to check the cancellation axioms of conjoint measurement |
| ConnMatTools | Tools for Working with Connectivity Data |
| conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |
| ConR | Computation of Parameters Used in Preliminary Assessment of Conservation Status |
| CONS | Consonance Analysis Module |
| ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |
| ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |
| constants | Reference on Constants, Units and Uncertainty |
| constellation | Identify Event Sequences Using Time Series Joins |
| constrainedKriging | Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |
| conStruct | Models Spatially Continuous and Discrete Population Genetic Structure |
| container | Deque, Set, and Dict - R6 Based Container Classes with Iterators |
| ContaminatedMixt | Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution |
| contfrac | Continued Fractions |
| conting | Bayesian Analysis of Contingency Tables |
| contoureR | Contouring of Non-Regular Three-Dimensional Data |
| ContourFunctions | Create Contour Plots from Data or a Function |
| contrast | A Collection of Contrast Methods |
| control | A Control Systems Toolbox |
| controlTest | Quantile Comparison for Two-Sample Right-Censored Survival Data |
| ConvergenceClubs | Finding Convergence Clubs |
| ConvergenceConcepts | Seeing Convergence Concepts in Action |
| convertGraph | Convert Graphical Files Format |
| convertr | Convert Between Units |
| convevol | Analysis of Convergent Evolution |
| convexjlr | Disciplined Convex Programming in R using 'Convex.jl' |
| convey | Income Concentration Analysis with Complex Survey Samples |
| convoSPAT | Convolution-Based Nonstationary Spatial Modeling |
| cooccur | Probabilistic Species Co-Occurrence Analysis in R |
| cooccurNet | Co-Occurrence Network |
| coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |
| coopProductGame | Cooperative Aspects of Linear Production Programming Problems |
| cooptrees | Cooperative aspects of optimal trees in weighted graphs |
| CoordinateCleaner | Automated Cleaning of Occurrence Records from Biological Collections |
| copBasic | General Bivariate Copula Theory and Many Utility Functions |
| copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |
| cope | Coverage Probability Excursion (CoPE) Sets |
| coppeCosenzaR | COPPE-Cosenza Fuzzy Hierarchy Model |
| coprimary | Sample Size Calculation for Two Primary Time-to-Event Endpoints in Clinical Trials |
| copula | Multivariate Dependence with Copulas |
| Copula.Markov | Copula-Based Estimation and Statistical Process Control for Serially Correlated Time Series |
| copulaData | Data Sets for Copula Modeling |
| CopulaDTA | Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies |
| copulaedas | Estimation of Distribution Algorithms Based on Copulas |
| CopulaRegression | Bivariate Copula Based Regression Models |
| CopulaREMADA | Copula Mixed Effect Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies |
| CopyDetect | Computing Response Similarity Indices for Multiple-Choice Tests |
| coRanking | Co-Ranking Matrix |
| Corbi | Collection of Rudimentary Bioinformatics Tools |
| corclass | Correlational Class Analysis |
| cord | Community Estimation in G-Models via CORD |
| CorDiff | Set-Based Differential Covariance Testing for Genomics |
| cordillera | Calculation of the OPTICS Cordillera |
| CORE | Cores of Recurrent Events |
| coreCT | Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging |
| corehunter | Multi-Purpose Core Subset Selection |
| CORElearn | Classification, Regression and Feature Evaluation |
| coreNLP | Wrappers Around Stanford CoreNLP Tools |
| coreSim | Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |
| coreTDT | TDT for compound heterozygous and recessive models |
| corHMM | Analysis of Binary Character Evolution |
| corkscrew | Preprocessor for Data Modeling |
| corlink | Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields |
| CORM | The Clustering of Regression Models Method |
| corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
| corpora | Statistics and Data Sets for Corpus Frequency Data |
| CorporaCoCo | Corpora Co-Occurrence Comparison |
| CoRpower | Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials |
| corpus | Text Corpus Analysis |
| corpustools | Managing, Querying and Analyzing Tokenized Text |
| corr2D | Implementation of 2D Correlation Analysis in R |
| CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |
| corrDNA | Finding Associations in Position-Wise Aligned DNA Sequence Dataset |
| correctedAUC | Correcting AUC for Measurement Error |
| CorrectedFDR | Correcting False Discovery Rates |
| CorrectOverloadedPeaks | Correct Overloaded Peaks from GC-APCI-MS Data |
| CorReg | Linear Regression Based on Linear Structure Between Variables |
| corregp | Functions and Methods for Correspondence Regression |
| correlbinom | Correlated Binomial Probabilities |
| Correlplot | A collection of functions for graphing correlation matrices |
| corrgram | Plot a Correlogram |
| CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |
| corrplot | Visualization of a Correlation Matrix |
| corrr | Correlations in R |
| corrsieve | CorrSieve |
| CorrToolBox | Modeling Correlational Magnitude Transformations in Discretization Contexts |
| corset | Arbitrary Bounding of Series and Time Series Objects |
| CorShrink | Adaptive Shrinkage of Correlation and Covariance Matrices |
| corTest | Robust Tests for Equal Correlation |
| corTools | Tools for processing data after a Genome Wide Association Study |
| cosa | Constrained Optimal Sample Allocation |
| COSINE | COndition SpecIfic sub-NEtwork |
| cosinor | Tools for estimating and predicting the cosinor model |
| cosinor2 | Extended Tools for Cosinor Analysis of Rhythms |
| cosmoFns | Functions for cosmological distances, times, luminosities, etc |
| cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |
| costat | Time Series Costationarity Determination |
| CosW | The CosW Distribution |
| cotrend | Consistant Cotrend Rank Selection |
| couchDB | Connect to and Work with CouchDB Databases |
| COUNT | Functions, Data and Code for Count Data |
| Counterfactual | Estimation and Inference Methods for Counterfactual Analysis |
| countgmifs | Discrete Response Regression for High-Dimensional Data |
| Countr | Flexible Univariate Count Models Based on Renewal Processes |
| countrycode | Convert Country Names and Country Codes |
| CountsEPPM | Mean and Variance Modeling of Count Data |
| countyfloods | Quantify United States County-Level Flood Measurements |
| countytimezones | Convert from UTC to Local Time for United States Counties |
| countyweather | Compiles Meterological Data for U.S. Counties |
| COUSCOus | A Residue-Residue Contact Detecting Method |
| covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |
| covatest | Tests on Properties of Space-Time Covariance Functions |
| covBM | Brownian Motion Processes for 'nlme'-Models |
| covequal | Test for Equality of Covariance Matrices |
| covfefe | Covfefy Any Word, Sentence or Speech |
| covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |
| covr | Test Coverage for Packages |
| covreg | A simultaneous regression model for the mean and covariance |
| covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
| CovSel | Model-Free Covariate Selection |
| CovSelHigh | Model-Free Covariate Selection in High Dimensions |
| covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |
| covTest | Computes covariance test for adaptive linear modelling |
| covTestR | Covariance Matrix Tests |
| CovTools | Statistical Tools for Covariance Analysis |
| cowbell | Performs Segmented Linear Regression on Two Independent Variables |
| cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |
| cowsay | Messages, Warnings, Strings with Ascii Animals |
| CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |
| coxed | Duration-Based Quantities of Interest for the Cox Proportional Hazards Model |
| coxinterval | Cox-Type Models for Interval-Censored Data |
| coxme | Mixed Effects Cox Models |
| coxphf | Cox Regression with Firth's Penalized Likelihood |
| CoxPhLb | Analyzing Right-Censored Length-Biased Data |
| coxphMIC | Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion |
| coxphSGD | Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model |
| coxphw | Weighted Estimation in Cox Regression |
| CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |
| CoxRidge | Cox Models with Dynamic Ridge Penalties |
| coxrobust | Robust Estimation in Cox Model |
| coxrt | Cox Proportional Hazards Regression for Right Truncated Data |
| coxsei | Fitting a CoxSEI Model |
| CP | Conditional Power Calculations |
| cp4p | Calibration Plot for Proteomics |
| cpa | Confirmatory Path Analysis through the d-sep tests |
| CPBayes | Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations |
| cpca | Methods to perform Common Principal Component Analysis (CPCA) |
| CPE | Concordance Probability Estimates in Survival Analysis |
| CpGassoc | Association Between Methylation and a Phenotype of Interest |
| cpgen | Parallelized Genomic Prediction and GWAS |
| CpGFilter | CpG Filtering Method Based on Intra-Class Correlation Coefficients |
| cpk | Clinical Pharmacokinetics |
| cplexAPI | R Interface to C API of IBM ILOG CPLEX |
| cplm | Compound Poisson Linear Models |
| cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |
| CPMCGLM | Correction of the P-Value after Multiple Coding in Generalized Linear Models |
| CPP | Composition of Probabilistic Preferences (CPP) |
| cpr | Control Polygon Reduction |
| Cprob | The Conditional Probability Function of a Competing Event |
| cprr | Functions for Working with Danish CPR Numbers |
| CPsurv | Nonparametric Change Point Estimation for Survival Data |
| cpt | Classification Permutation Test |
| cptcity | 'cpt-city' Colour Gradients |
| cptec | An Interface to the 'CPTEC/INPE' API |
| cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |
| cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |
| CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |
| cr17 | Testing Differences Between Competing Risks Models and Their Visualisations |
| CRAC | Cosmology R Analysis Code |
| cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |
| crank | Completing Ranks |
| cranlike | Tools for 'CRAN'-Like Repositories |
| cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |
| cranly | Package Directives and Collaboration Networks in CRAN |
| CRANsearcher | RStudio Addin for Searching Packages in CRAN Database Based on Keywords |
| crantastic | Various R tools for http://crantastic.org/ |
| crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |
| crayon | Colored Terminal Output |
| crblocks | Categorical Randomized Block Data Analysis |
| crch | Censored Regression with Conditional Heteroscedasticity |
| CREAM | Clustering of Genomic Regions Analysis Method |
| CreditMetrics | Functions for calculating the CreditMetrics risk model |
| creditr | Credit Default Swaps in R |
| CreditRisk | Evaluation of Credit Risk with Structural and Reduced Form Models |
| credsubs | Credible Subsets |
| credule | Credit Default Swap Functions |
| cregg | Simple Conjoint Tidying, Analysis, and Visualization |
| cRegulome | Obtain and Visualize Regulome-Gene Expression Correlations in Cancer |
| CRF | Conditional Random Fields |
| cricketr | Analyze Cricketers Based on ESPN Cricinfo Statsguru |
| crimCV | Group-Based Modelling of Longitudinal Data |
| crimelinkage | Statistical Methods for Crime Series Linkage |
| crisp | Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way |
| CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |
| crminer | Fetch 'Scholary' Full Text from 'Crossref' |
| crmn | CCMN and other noRMalizatioN methods for metabolomics data |
| crmPack | Object-Oriented Implementation of CRM Designs |
| crn | Downloads and Builds datasets for Climate Reference Network |
| crochet | Implementation Helper for [ and [<- Of Custom Matrix-Like Types |
| cromwellDashboard | A Dashboard to Visualize Scientific Workflows in 'Cromwell' |
| cronR | Schedule R Scripts and Processes with the 'cron' Job Scheduler |
| crop | Graphics Cropping Tool |
| cropdatape | Open Data of Agricultural Production of Crops of Peru |
| CrossClustering | A Partial Clustering Algorithm |
| crossdes | Construction of Crossover Designs |
| crossmatch | The Cross-match Test |
| Crossover | Analysis and Search of Crossover Designs |
| crossReg | Confidence intervals for crossover points of two simple regression lines |
| crossrun | Joint Distribution of Number of Crossings and Longest Run |
| CrossScreening | Cross-Screening in Observational Studies that Test Many Hypotheses |
| crosstalk | Inter-Widget Interactivity for HTML Widgets |
| CrossVA | Verbal Autopsy Data Transform for Use with Various Coding Algorithms |
| crossval | Generic Functions for Cross Validation |
| CrossValidate | Classes and Methods for Cross Validation of "Class Prediction" Algorithms |
| crosswalkr | Rename and Encode Data Frames Using External Crosswalk Files |
| crossword.r | Generating Crosswords from Word Lists |
| crp.CSFP | CreditRisk+ Portfolio Model |
| CRPClustering | Bayesian Nonparametric Chinese Restaurant Process Clustering with Entropy |
| crplyr | A 'dplyr' Interface for Crunch |
| crqa | Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |
| crqanlp | Cross-Recurrence Quantification Analysis for Dynamic Natural Language Processing |
| crrp | Penalized Variable Selection in Competing Risks Regression |
| crrSC | Competing risks regression for Stratified and Clustered data |
| crrstep | Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |
| crs | Categorical Regression Splines |
| crskdiag | Diagnostics for Fine and Gray Model |
| crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |
| crsra | Tidying and Analyzing 'Coursera' Research Export Data |
| crtests | Classification and Regression Tests |
| CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |
| CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |
| crul | HTTP Client |
| crunch | Crunch.io Data Tools |
| crunchy | Shiny Apps on Crunch |
| cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |
| CrypticIBDcheck | Identifying Cryptic Relatedness in Genetic Association Studies |
| crypto | Cryptocurrency Market Data |
| CryptRndTest | Statistical Tests for Cryptographic Randomness |
| cryst | Calculate the Relative Crystallinity of Starch by XRD and FTIR |
| csabounds | Bounds on Distributional Treatment Effect Parameters |
| csampling | Functions for Conditional Simulation in Regression-Scale Models |
| CsChange | Testing for Change in C-Statistic |
| CSclone | Bayesian Nonparametric Modeling in R |
| CSeqpat | Frequent Contiguous Sequential Pattern Mining of Text |
| CSESA | CRISPR-Based Salmonella Enterica Serotype Analyzer |
| CSFA | Connectivity Scores with Factor Analysis |
| cshapes | The CShapes Dataset and Utilities |
| csn | Closed Skew-Normal Distribution |
| csp | Correlates of State Policy Data Set in R |
| csrplus | Methods to Test Hypotheses on the Distribution of Spatial Point Processes |
| csSAM | csSAM - cell-specific Significance Analysis of Microarrays |
| cssTools | Cognitive Social Structure Tools |
| cstab | Selection of Number of Clusters via Normalized Clustering Instability |
| cstar | Substantive significance testing for regression estimates and marginal effects |
| csv | Read and Write CSV Files with Selected Conventions |
| csvread | Fast Specialized CSV File Loader |
| csvy | Import and Export CSV Data with a YAML Metadata Header |
| cthreshER | Continuous Threshold Expectile Regression |
| ctl | Correlated Trait Locus (CTL) Mapping in R |
| CTM | A Text Mining Toolkit for Chinese Document |
| ctmcd | Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data |
| ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |
| ctmle | Collaborative Targeted Maximum Likelihood Estimation |
| ctmm | Continuous-Time Movement Modeling |
| ctqr | Censored and Truncated Quantile Regression |
| CTRE | Thresholding Bursty Time Series |
| ctrlGene | Assess the Stability of Candidate Housekeeping Genes |
| cts | Continuous Time Autoregressive Models |
| ctsem | Continuous Time Structural Equation Modelling |
| CTT | Classical Test Theory Functions |
| CTTinShiny | Shiny Interface for the CTT Package |
| CTTShiny | Classical Test Theory via Shiny |
| ctv | CRAN Task Views |
| CUB | A Class of Mixture Models for Ordinal Data |
| cubature | Adaptive Multivariate Integration over Hypercubes |
| cubfits | Codon Usage Bias Fits |
| cubing | Rubik's Cube Solving |
| Cubist | Rule- And Instance-Based Regression Modeling |
| CuCubes | MultiDimensional Feature Selection (MDFS) |
| cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |
| cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |
| CUFF | Charles's Utility Function using Formula |
| cultevo | Tools, Measures and Statistical Tests for Cultural Evolution |
| CUMP | Analyze Multivariate Phenotypes by Combining Univariate Results |
| cumplyr | Extends ddply to allow calculation of cumulative quantities |
| cumSeg | Change point detection in genomic sequences |
| cumstats | Cumulative Descriptive Statistics |
| curl | A Modern and Flexible Web Client for R |
| currentSurvival | Estimation of CCI and CLFS Functions |
| curry | Partial Function Application with %<%, %-<%, and %><% |
| curstatCI | Confidence Intervals for the Current Status Model |
| curvecomp | Multiple Curve Comparisons Using Parametric Bootstrap |
| curvHDR | Filtering of Flow Cytometry Samples |
| cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |
| CustomerScoringMetrics | Evaluation Metrics for Customer Scoring Models Depending on Binary Classifiers |
| customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |
| customLayout | Arrange Elements on the R's Drawing Area or Inside the PowerPoint's Slide |
| CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |
| cutoffR | CUTOFF: A Spatio-temporal Imputation Method |
| cutpointr | Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks |
| CutpointsOEHR | Optimal Equal-HR Method to Find Two Cutpoints for U-Shaped Relationships in Cox Model |
| cuttlefish.model | An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |
| cvar | Compute Expected Shortfall and Value at Risk for Continuous Distributions |
| cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |
| CVcalibration | Estimation of the Calibration Equation with Error-in Observations |
| cvcrand | Efficient Design and Analysis of Cluster Randomized Trials |
| CVD | Color Vision Deficiencies |
| cvequality | Tests for the Equality of Coefficients of Variation from Multiple Groups |
| CVglasso | Lasso Penalized Precision Matrix Estimation |
| cvq2 | Calculate the predictive squared correlation coefficient |
| CVR | Canonical Variate Regression |
| CVST | Fast Cross-Validation via Sequential Testing |
| CVThresh | Level-Dependent Cross-Validation Thresholding |
| cvTools | Cross-validation tools for regression models |
| CVTuningCov | Regularized Estimators of Covariance Matrices with CV Tuning |
| cvxbiclustr | Convex Biclustering Algorithm |
| cvxclustr | Splitting methods for convex clustering |
| CVXR | Disciplined Convex Optimization |
| cwhmisc | Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools |
| cwm | Cluster Weighted Models by EM algorithm |
| cxhull | Convex Hull |
| cxxfunplus | extend cxxfunction by saving the dynamic shared objects |
| cycleRtools | Tools for Cycling Data Analysis |
| cyclestreets | Cycle Routing and Data for Cycling Advocacy |
| cyclocomp | Cyclomatic Complexity of R Code |
| cycloids | cycloids |
| Cyclops | Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis |
| cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |
| cyphid | Cycle and Phase Identification for mastication data |
| cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |
| CytobankAPI | Cytobank API Wrapper for R |
| CytobankAPIstats | Computes Signaling and Population Stats for Cytometry Data on Cytobank using 'CytobankAPI' |
| CytobankBridgeR | Bridging and Extending the CytobankAPI Package in R to the Cytobank Web Application |
| cytoDiv | Cytometric diversity indices |
| cytofan | Plot Fan Plots for Cytometry Data using 'ggplot2' |
| cytometree | Automated Cytometry Gating and Annotation |
| cytominer | Methods for Image-Based Cell Profiling |
| D2C | Predicting Causal Direction from Dependency Features |
| D3GB | Interactive Genome Browser with R |
| d3heatmap | Interactive Heat Maps Using 'htmlwidgets' and 'D3.js' |
| d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |
| D3partitionR | Interactive Charts of Nested and Hierarchical Data with 'D3.js' |
| d3plus | Seamless 'D3Plus' Integration |
| d3r | 'd3.js' Utilities for R |
| d3Tree | Create Interactive Collapsible Trees with the JavaScript 'D3' Library |
| DAAG | Data Analysis and Graphics Data and Functions |
| DAAGbio | Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences |
| DAAGxtras | Data Sets and Functions, supplementary to DAAG |
| daarem | Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms |
| DAC | Calculating Data Agreement Criterion Scores to Rank Experts Based on Their Beliefs |
| DACF | Data Analysis with Ceiling and/or Floor Data |
| dad | Three-Way Data Analysis Through Densities |
| dae | Functions Useful in the Design and ANOVA of Experiments |
| daewr | Design and Analysis of Experiments with R |
| daff | Diff, Patch and Merge for Data.frames |
| dafs | Data analysis for forensic scientists |
| dagitty | Graphical Analysis of Structural Causal Models |
| dagR | R functions for directed acyclic graphs |
| Daim | Diagnostic accuracy of classification models |
| DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |
| DAKS | Data Analysis and Knowledge Spaces |
| DALEX | Descriptive mAchine Learning EXplanations |
| dalmatian | Automating the Fitting of Double Linear Mixed Models in 'JAGS' |
| DALY | The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R |
| dam | Data Analysis Metabolomics |
| DamiaNN | Neural Network Numerai |
| DAMisc | Dave Armstrong's Miscellaneous Functions |
| DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |
| damr | Interface to Drosophila Activity Monitor System Result Files |
| dams | Dams in the United States from the National Inventory of Dams (NID) |
| DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |
| DAP | Discriminant Analysis via Projections |
| Dark | The Analysis of Dark Adaptation Data |
| darksky | Tools to Work with the 'Dark Sky' 'API' |
| dartR | Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis |
| darts | Statistical Tools to Analyze Your Darts Game |
| dashboard | Interactive Data Visualization with D3.js |
| Dasst | Tools for Reading, Processing and Writing 'DSSAT' Files |
| dat | Tools for Data Manipulation |
| data.table | Extension of 'data.frame' |
| data.tree | General Purpose Hierarchical Data Structure |
| data.world | Functions and Add-Ins for Working with 'data.world' Data Sets and Projects |
| Data2LD | Functional Data Analysis with Linear Differential Equations |
| data360r | Wrapper for TC/Govdata360 API |
| DatabaseConnector | Connecting to Various Database Platforms |
| DatabaseConnectorJars | JAR Dependencies for the 'DatabaseConnector' Package |
| DatabionicSwarm | Swarm Intelligence for Self-Organized Clustering |
| datacheck | Tools for Checking Data Consistency |
| DataClean | Data Cleaning |
| DataCombine | Tools for Easily Combining and Cleaning Data Sets |
| dataCompareR | Compare Two Data Frames and Summarise the Difference |
| datadigest | Create an Interactive Data Summary |
| datadogr | R Client for 'Datadog' API |
| datadr | Divide and Recombine for Large, Complex Data |
| DataEntry | Make it Easier to Enter Questionnaire Data |
| DataExplorer | Data Explorer |
| dataframes2xls | Write Data Frames to Xls Files |
| datafsm | Estimating Finite State Machine Models from Data |
| DataGraph | Export Data from R so DataGraph can Read it |
| DataLoader | Import Multiple File Types |
| dataMaid | A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process |
| datamap | A system for mapping foreign objects to R variables and environments |
| datamaps | Create Interactive Web Maps with the 'JavaScript Datamaps' Library |
| datamart | Unified access to your data sources |
| dataMeta | Create and Append a Data Dictionary for an R Dataset |
| dataonderivatives | Easily Source Publicly Available Data on Derivatives |
| dataone | R Interface to the DataONE REST API |
| datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |
| DataPackageR | Construct Reproducible Analytic Data Sets as R Packages |
| datapasta | R Tools for Data Copy-Pasta |
| dataPreparation | Automated Data Preparation |
| dataQualityR | Performs variable level data quality checks and generates summary statistics |
| dataRetrieval | Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data |
| datarobot | 'DataRobot' Predictive Modeling API |
| datasauRus | Datasets from the Datasaurus Dozen |
| dataseries | Switzerland's Data Series in One Place |
| datasets.load | Interface for Loading Datasets |
| DatAssim | Data Assimilation |
| datastepr | An Implementation of a SAS-Style Data Step |
| datastructures | Implementation of Core Data Structures |
| datasus | An Interface to DATASUS System |
| datautils | Timestamps and Advanced Plotting |
| dataverse | Client for Dataverse 4 Repositories |
| dataview | Data and Workspace Browser for Terminals |
| DataVisualizations | Visualizations of High-Dimensional Data |
| date | Functions for Handling Dates |
| datetime | Nominal Dates, Times, and Durations |
| datetimeutils | Utilities for Dates and Times |
| DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |
| datoramar | Interface to the 'Datorama' API |
| datr | 'Dat' Protocol Interface |
| dave | Functions for "Data Analysis in Vegetation Ecology" |
| Davies | The Davies Quantile Function |
| dawai | Discriminant Analysis with Additional Information |
| daymetr | Interface to the 'Daymet' Web Services |
| dbarts | Discrete Bayesian Additive Regression Trees Sampler |
| dbConnect | Provides a graphical user interface to connect with databases that use MySQL |
| dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |
| dbEmpLikeNorm | Test for joint assessment of normality |
| DBEST | Detecting Breakpoints and Estimating Segments in Trend |
| dbfaker | A Tool to Ensure the Validity of Database Writes |
| DBGSA | methods of distance-based gene set functional enrichment analysis |
| DBHC | Sequence Clustering with Discrete-Output HMMs |
| dbhydroR | 'DBHYDRO' Hydrologic and Water Quality Data |
| DBI | R Database Interface |
| DBItest | Testing 'DBI' Back Ends |
| DBKGrad | Discrete Beta Kernel Graduation of Mortality Data |
| dblcens | Compute the NPMLE of distribution from doubly censored data |
| dblr | Discrete Boosting Logistic Regression |
| dbmss | Distance-Based Measures of Spatial Structures |
| dbplot | Simplifies Plotting Data Inside Databases |
| dbplyr | A 'dplyr' Back End for Databases |
| dbscan | Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms |
| dbstats | Distance-Based Statistics |
| dbx | A Fast, Easy-to-Use Database Interface |
| dc3net | Inferring Condition-Specific Networks via Differential Network Inference |
| DCA | Dynamic Correlation Analysis for High Dimensional Data |
| DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |
| DCD | Differential Community Detection in Paired Biological Networks |
| DCEM | Clustering for Multivariate and Univariate Data Using Expectation Maximization Algorithm |
| dcemriS4 | A Package for Image Analysis of DCE-MRI (S4 Implementation) |
| DCG | Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis |
| DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |
| dcGOR | Analysis of Ontologies and Protein Domain Annotations |
| dChipIO | Methods for Reading dChip Files |
| DCL | Claims Reserving under the Double Chain Ladder Model |
| dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |
| DCluster | Functions for the Detection of Spatial Clusters of Diseases |
| DClusterm | Model-Based Detection of Disease Clusters |
| DCM | Data Converter Module |
| dcminfo | Information Matrix for Diagnostic Classification Models |
| dcmle | Hierarchical Models Made Easy with Data Cloning |
| dcmodify | Modify Data Using Externally Defined Modification Rules |
| DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |
| dCovTS | Distance Covariance and Correlation for Time Series Analysis |
| dcurver | Utility Functions for Davidian Curves |
| dcv | Conventional Cross-validation statistics for climate-growth model |
| ddalpha | Depth-Based Classification and Calculation of Data Depth |
| DDD | Diversity-Dependent Diversification |
| ddeploy | Wrapper for the Duke Deploy REST API |
| DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |
| ddiv | Data Driven I-v Feature Extraction |
| DDIwR | DDI with R |
| DDM | Death Registration Coverage Estimation |
| DDoutlier | Distance & Density-Based Outlier Detection |
| ddpcr | Analysis and Visualization of Droplet Digital PCR in R and on the Web |
| DDPGPSurv | DDP-GP Survival Analysis |
| DDRTree | Learning Principal Graphs with DDRTree |
| ddsPLS | Multi-Data-Driven Sparse PLS Robust to Missing Samples |
| ddst | Data Driven Smooth Tests |
| deadband | Statistical Deadband Algorithms Comparison |
| deal | Learning Bayesian Networks with Mixed Variables |
| deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |
| deBInfer | Bayesian Inference for Differential Equations |
| debugme | Debug R Packages |
| debugr | Debug Tool to Watch Objects/Expressions While Running an R Script |
| DECIDE | DEComposition of Indirect and Direct Effects |
| decido | Bindings for 'Mapbox' Ear Cutting Triangulation Library |
| decision | Statistical Decision Analysis |
| DecisionAnalysis | Implementation of Multi Objective Decision Analysis |
| decisionSupport | Quantitative Support of Decision Making under Uncertainty |
| DeclareDesign | Declare and Diagnose Research Designs |
| decode | Differential Co-Expression and Differential Expression Analysis |
| decoder | Decode Coded Variables to Plain Text and the Other Way Around |
| decomposedPSF | Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD) |
| decompr | Global-Value-Chain Decomposition |
| decon | Deconvolution Estimation in Measurement Error Models |
| deconstructSigs | Identifies Signatures Present in a Tumor Sample |
| deconvolveR | Empirical Bayes Estimation Strategies |
| DecorateR | Fit and Deploy DECORATE Trees |
| Deducer | A Data Analysis GUI for R |
| DeducerExtras | Additional dialogs and functions for Deducer |
| DeducerPlugInExample | Deducer Plug-in Example |
| DeducerPlugInScaling | Reliability and factor analysis plugin |
| DeducerSpatial | Deducer for spatial data analysis |
| DeducerSurvival | Add Survival Dialogue to Deducer |
| DeducerText | Deducer GUI for Text Data |
| deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |
| deductive | Data Correction and Imputation Using Deductive Methods |
| deepboost | Deep Boosting Ensemble Modeling |
| deeplr | Interface to the 'DeepL' Translation API |
| deepnet | deep learning toolkit in R |
| DEEPR | Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test |
| default | Change the Default Arguments in R Functions |
| define | Create FDA-Style Data and Program Definitions |
| deflateBR | Deflate Nominal Brazilian Reais |
| deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |
| degenes | Detection of differentially expressed genes |
| deGradInfer | Parameter Inference for Systems of Differential Equation |
| degreenet | Models for Skewed Count Distributions Relevant to Networks |
| deisotoper | Detection of Isotope Pattern of a Mass Spectrometric Measurement |
| dejaVu | Multiple Imputation for Recurrent Events |
| Delaporte | Statistical Functions for the Delaporte Distribution |
| DelayedEffect.Design | Sample Size and Power Calculations using the APPLE and SEPPLE Methods |
| deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
| DeLorean | Estimates Pseudotimes for Single Cell Expression Data |
| delt | Estimation of Multivariate Densities Using Adaptive Partitions |
| Delta | Measure of Agreement Between Two Raters |
| deltaPlotR | Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method |
| deltar | Calculation of Delta R Values |
| Demerelate | Functions to Calculate Relatedness on Diploid Genetic Data |
| DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values |
| demi | Differential Expression from Multiple Indicators |
| deming | Deming, Thiel-Sen and Passing-Bablock Regression |
| DemoDecomp | Decompose Demographic Functions |
| demogR | Analysis of Age-Structured Demographic Models |
| demography | Forecasting Mortality, Fertility, Migration and Population Data |
| demoKde | Kernel Density Estimation for Demonstration Purposes |
| DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |
| demu | Optimal Design Emulators via Point Processes |
| dendextend | Extending 'dendrogram' Functionality in R |
| dendroextras | Extra Functions to Cut, Label and Colour Dendrogram Clusters |
| dendrometeR | Analyzing Dendrometer Data |
| DendroSync | A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies |
| dendroTools | Linear and Nonlinear Methods for Analyzing Dendroclimatological Data |
| DendSer | Dendrogram seriation: ordering for visualisation |
| dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |
| DengueRT | Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak |
| denoiSeq | Differential Expression Analysis Using a Bottom-Up Model |
| denoiseR | Regularized Low Rank Matrix Estimation |
| denovolyzeR | Statistical Analyses of De Novo Genetic Variants |
| denpro | Visualization of Multivariate Functions, Sets, and Data |
| denseFLMM | Functional Linear Mixed Models for Densely Sampled Data |
| Density.T.HoldOut | Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation |
| densityClust | Clustering by Fast Search and Find of Density Peaks |
| DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |
| densratio | Density Ratio Estimation |
| denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |
| DEoptim | Global Optimization by Differential Evolution |
| DEoptimR | Differential Evolution Optimization in Pure R |
| depend.truncation | Statistical Methods for the Analysis of Dependently Truncated Data |
| depmix | Dependent Mixture Models |
| depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |
| depth | Nonparametric Depth Functions for Multivariate Analysis |
| depth.plot | Multivariate Analogy of Quantiles |
| DepthProc | Statistical Depth Functions for Multivariate Analysis |
| depthTools | Depth Tools Package |
| dequer | Stacks, Queues, and 'Deques' for R |
| Deriv | Symbolic Differentiation |
| derivmkts | Functions and R Code to Accompany Derivatives Markets |
| DES | Discrete Event Simulation |
| desc | Manipulate DESCRIPTION Files |
| descomponer | Seasonal Adjustment by Frequency Analysis |
| descr | Descriptive Statistics |
| DescribeDisplay | An Interface to the 'DescribeDisplay' 'GGobi' Plugin |
| describer | Describe Data in R Using Common Descriptive Statistics |
| DescriptiveStats.OBeu | Descriptive Statistics 'OpenBudgets.eu' |
| descriptr | Generate Descriptive Statistics & Explore Statistical Distributions |
| descstatsr | Descriptive Univariate Statistics |
| desctable | Produce Descriptive and Comparative Tables Easily |
| DescTools | Tools for Descriptive Statistics |
| DescToolsAddIns | Some Functions to be Used as Shortcuts in 'RStudio' |
| deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |
| designGG | Computational tool for designing genetical genomics experiments |
| designGLMM | Finding Optimal Block Designs for a Generalised Linear Mixed Model |
| DesignLibrary | Library of Research Designs |
| designmatch | Matched Samples that are Balanced and Representative by Design |
| desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |
| desirability | Function Optimization and Ranking via Desirability Functions |
| desire | Desirability functions in R |
| DESnowball | Bagging with Distance-based Regression for Differential Gene Expression Analyses |
| deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE') |
| desplot | Plotting Field Plans for Agricultural Experiments |
| detect | Analyzing Wildlife Data with Detection Error |
| detector | Detect Data Containing Personally Identifiable Information |
| detectRUNS | Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes |
| deTestSet | Test Set for Differential Equations |
| DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |
| detpack | Density Estimation and Random Number Generation with Distribution Element Trees |
| DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |
| detrendeR | Start the detrendeR Graphical User Interface (GUI) |
| detrendr | Detrend Images |
| DetSel | A computer program to detect markers responding to selection |
| detzrcr | Compare Detrital Zircon Suites |
| devEMF | EMF Graphics Output Device |
| devFunc | Clear and Condense Argument Check for User-Defined Functions |
| DEVis | A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation |
| Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
| devRate | Quantify the Relationship Between Development Rate and Temperature in Ectotherms |
| devtools | Tools to Make Developing R Packages Easier |
| dexter | Data Management and Analysis of Tests |
| dextergui | A Graphic User Interface to Dexter |
| dexterMST | CML Calibration of Multi Stage Tests |
| df2json | Convert a dataframe to JSON |
| dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |
| dfCompare | Compare Two Dataframes and Return Adds, Changes, and Deletes |
| dfcrm | Dose-finding by the continual reassessment method |
| dfexplore | Explore data.frames by plotting NA and classes of each variable |
| DFIT | Differential Functioning of Items and Tests |
| dfmeta | Meta-Analysis of Phase I Dose-Finding Early Clinical Trials |
| dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |
| dfoptim | Derivative-Free Optimization |
| Dforest | Decision Forest |
| dfped | Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies |
| dfphase1 | Phase I Control Charts (with Emphasis on Distribution-Free Methods) |
| dfpk | Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials |
| dga | Capture-Recapture Estimation using Bayesian Model Averaging |
| dGAselID | Genetic Algorithm with Incomplete Dominance for Feature Selection |
| DGCA | Differential Gene Correlation Analysis |
| dggridR | Discrete Global Grids |
| dglars | Differential Geometric Least Angle Regression |
| dglm | Double Generalized Linear Models |
| DGM | Dynamic Graphical Models |
| dgmb | Simulating Data for PLS Mode B Structural Models |
| dgo | Dynamic Estimation of Group-Level Opinion |
| dgodata | Data for the 'dgo' Package |
| dgof | Discrete Goodness-of-Fit Tests |
| DGVM3D | 3D Forest Simulation Visualization Tool |
| DHARMa | Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models |
| dhga | Differential Hub Gene Analysis |
| dhh | A Heavy-Headed Distribution |
| DHS.rates | Calculate Key DHS Indicators |
| dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |
| di | Deficit Index (DI) |
| diagis | Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling |
| diagmeta | Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints |
| diagonals | Block Diagonal Extraction or Replacement |
| diagram | Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams |
| DiagrammeR | Graph/Network Visualization |
| DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |
| DiallelAnalysisR | Diallel Analysis with R |
| dials | Tools for Creating Tuning Parameter Values |
| diaplt | Beads Summary Plot of Ranges |
| dice | Calculate probabilities of various dice-rolling events |
| DiceDesign | Designs of Computer Experiments |
| DiceEval | Construction and Evaluation of Metamodels |
| DiceKriging | Kriging Methods for Computer Experiments |
| DiceOptim | Kriging-Based Optimization for Computer Experiments |
| diceR | Diverse Cluster Ensemble in R |
| DiceView | Plot Methods for Computer Experiments Design and Surrogate |
| dichromat | Color Schemes for Dichromats |
| dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |
| DIconvex | Finding Patterns of Monotonicity and Convexity in Data |
| did | Treatment Effects with Multiple Periods and Groups |
| DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |
| Diderot | Bibliographic Network Analysis |
| didrooRFM | Compute Recency Frequency Monetary Scores for your Customer Data |
| dief | Metrics for Continuous Efficiency |
| dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics |
| diezeit | R Interface to the ZEIT ONLINE Content API |
| DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |
| difconet | Differential Coexpressed Networks |
| DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |
| diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |
| diffdf | Dataframe Difference Tool |
| diffee | Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure |
| diffEq | Functions from the book Solving Differential Equations in R |
| diffeqr | Solving Differential Equations (ODEs, SDEs, DDEs, DAEs) |
| diffeR | Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables |
| diffIRT | Diffusion IRT Models for Response and Response Time Data |
| diffMeanVar | Detecting Gene Probes with Different Means or Variances Between Two Groups |
| diffMeshGP | Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model |
| DiffNet | Detection of Statistically Significant Changes in Complex Biological Networks |
| diffobj | Diffs for R Objects |
| diffpriv | Easy Differential Privacy |
| diffr | Display Differences Between Two Files using Codediff Library |
| diffractometry | Baseline Identification and Peak Decomposition for x-Ray Diffractograms |
| diffrprojects | Projects for Text Version Comparison and Analytics in R |
| diffrprojectswidget | Visualization for 'diffrprojects' |
| diffusion | Forecast the Diffusion of New Products |
| diffusionMap | Diffusion Map |
| DiffusionRgqd | Inference and Analysis for Generalized Quadratic Diffusions |
| DiffusionRimp | Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines |
| DiffusionRjgqd | Inference and Analysis for Jump Generalized Quadratic Diffusions |
| diffusr | Network Diffusion Algorithms |
| DIFlasso | A Penalty Approach to Differential Item Functioning in Rasch Models |
| difNLR | DIF and DDF Detection by Non-Linear Regression Models |
| difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |
| DIFtree | Item Focused Trees for the Identification of Items in Differential Item Functioning |
| digest | Create Compact Hash Digests of R Objects |
| Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |
| digitalPCR | Estimate Copy Number for Digital PCR |
| digitize | Use Data from Published Plots in R |
| dils | Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links |
| DIME | DIME (Differential Identification using Mixture Ensemble) |
| dimRed | A Framework for Dimensionality Reduction |
| dina | Bayesian Estimation of DINA Model |
| dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |
| dineq | Decomposition of (Income) Inequality |
| dint | A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates |
| DiPhiSeq | Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data |
| diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |
| DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |
| DirectedClustering | Directed Weighted Clustering Coefficient |
| DirectEffects | Estimating Controlled Direct Effects for Explaining Causal Findings |
| Directional | Directional Statistics |
| directlabels | Direct Labels for Multicolor Plots |
| directotree | Creates an Interactive Tree Structure of a Directory |
| directPA | Direction Analysis for Pathways and Kinases |
| DirectStandardisation | Adjusted Means and Proportions by Direct Standardisation |
| dirichletprocess | Build Dirichlet Process Objects for Bayesian Modelling |
| DirichletReg | Dirichlet Regression in R |
| dirmcmc | Directional Metropolis Hastings Algorithm |
| dirmult | Estimation in Dirichlet-Multinomial distribution |
| discgolf | Discourse API Client |
| disclap | Discrete Laplace Exponential Family |
| disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |
| disco | Discordance and Concordance of Transcriptomic Responses |
| discord | Functions for Discordant Kinship Modeling |
| discretecdAlgorithm | Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks |
| DiscreteFDR | Multiple Testing Procedures with Adaptation for Discrete Tests |
| DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |
| DiscreteLaplace | Discrete Laplace Distributions |
| discreteMTP | Multiple testing procedures for discrete test statistics |
| discreteRV | Create and Manipulate Discrete Random Variables |
| DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |
| discretization | Data preprocessing, discretization for classification |
| discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs) |
| DiscriMiner | Tools of the Trade for Discriminant Analysis |
| discSurv | Discrete Time Survival Analysis |
| diseasemapping | Modelling Spatial Variation in Disease Risk for Areal Data |
| DisHet | Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples |
| DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |
| DisImpact | Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups |
| diskImageR | A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays |
| dismo | Species Distribution Modeling |
| disparityfilter | Disparity Filter Algorithm for Weighted Networks |
| displayHTS | displayHTS |
| dispmod | Modelling Dispersion in GLM |
| disposables | Create Disposable R Packages for Testing |
| dispRity | Measuring Disparity in R |
| dissever | Spatial Downscaling using the Dissever Algorithm |
| dissUtils | Utilities for making pairwise comparisons of multivariate data |
| Distance | Distance Sampling Detection Function and Abundance Estimation |
| distance.sample.size | Calculates Study Size Required for Distance Sampling |
| distances | Tools for Distance Metrics |
| DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |
| distcomp | Computations over Distributed Data without Aggregation |
| distcrete | Discrete Distribution Approximations |
| distdichoR | Distributional Method for the Dichotomisation of Continuous Outcomes |
| distdrawr | Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database |
| distfree.cr | Distribution-Free Confidence Region |
| distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |
| disto | Unified Interface to Distance, Dissimilarity, Similarity Matrices |
| distory | Distance Between Phylogenetic Histories |
| distr | Object Oriented Implementation of Distributions |
| distrDoc | Documentation for 'distr' Family of R Packages |
| distrEllipse | S4 Classes for Elliptically Contoured Distributions |
| distrEx | Extensions of Package 'distr' |
| DISTRIB | Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach |
| DistributionUtils | Distribution Utilities |
| distrMod | Object Oriented Implementation of Probability Models |
| distrom | Distributed Multinomial Regression |
| distrr | Estimate and Manage Empirical Distributions |
| distrRmetrics | Distribution Classes for Distributions from Rmetrics |
| distrSim | Simulation Classes Based on Package 'distr' |
| distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |
| distrTEst | Estimation and Testing Classes Based on Package 'distr' |
| divagis | Provides tools for quality checks of georeferenced plant species accessions |
| divDyn | Diversity Dynamics using Fossil Sampling Data |
| diveMove | Dive Analysis and Calibration |
| diverse | Diversity Measures for Complex Systems |
| diversitree | Comparative 'Phylogenetic' Analyses of Diversification |
| diveRsity | A Comprehensive, General Purpose Population Genetics Analysis Package |
| DiversityOccupancy | Building Diversity Models from Multiple Species Occupancy Models |
| divest | Get Images Out of DICOM Format Quickly |
| DivMelt | HRM Diversity Assay Analysis Tool |
| divo | Tools for Analysis of Diversity and Similarity in Biological Systems |
| dixon | Nearest Neighbour Contingency Table Analysis |
| DJL | Distance Measure Based Judgment and Learning |
| dkanr | Client for the 'DKAN' API |
| dkDNA | Diffusion Kernels on a Set of Genotypes |
| dLagM | Time Series Regression Models with Distributed Lag Models |
| DLASSO | Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models |
| dlib | Allow Access to the 'Dlib' C++ Library |
| dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
| dlmap | Detection Localization Mapping for QTL |
| DLMtool | Data-Limited Methods Toolkit |
| dlnm | Distributed Lag Non-Linear Models |
| dlookr | Tools for Data Diagnosis, Exploration, Transformation |
| dlsem | Distributed-Lag Linear Structural Equation Models |
| dlstats | Download Stats of R Packages |
| dma | Dynamic Model Averaging |
| dml | Distance Metric Learning in R |
| dmm | Dyadic Mixed Model for Pedigree Data |
| DMMF | Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model |
| dMod | Dynamic Modeling and Parameter Estimation in ODE Models |
| DMRMark | DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data |
| DMRnet | Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data |
| dmt | Dependency Modeling Toolkit |
| dmutate | Mutate Data Frames with Random Variates |
| DMwR | Functions and data for "Data Mining with R" |
| DMwR2 | Functions and Data for the Second Edition of "Data Mining with R" |
| dna | Differential Network Analysis |
| DNAseqtest | Generating and Testing DNA Sequences |
| DNAtools | Tools for Analysing Forensic Genetic DNA Data |
| DnE | Distribution and Equation |
| dnet | Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |
| DNetFinder | Estimating Differential Networks under Semiparametric Gaussian Graphical Models |
| dng | Distributions and Gradients |
| DNLC | Differential Network Local Consistency Analysis |
| DNMF | Discriminant Non-Negative Matrix Factorization |
| dnr | Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family |
| DOBAD | Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains |
| dobson | Data from the GLM Book by Dobson and Barnett |
| doBy | Groupwise Statistics, LSmeans, Linear Contrasts, Utilities |
| docker | Wraps Docker Python SDK |
| dockerfiler | Easy Dockerfile Creation from R |
| docopt | Command-Line Interface Specification Language |
| docopulae | Optimal Designs for Copula Models |
| docstring | Provides Docstring Capabilities to R Functions |
| documair | Automatic Documentation for R packages |
| document | Run 'roxygen2' on (Chunks of) Single Code Files |
| docuSignr | Connect to 'DocuSign' API |
| docxtools | Tools for R Markdown to Docx Documents |
| docxtractr | Extract Data Tables and Comments from 'Microsoft' 'Word' Documents |
| Dodge | Acceptance Sampling Ideas Originated by H.F. Dodge |
| dodgr | Distances on Directed Graphs |
| DODR | Detection of Differential Rhythmicity |
| DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |
| DoE.MIParray | Creation of Arrays by Mixed Integer Programming |
| DoE.wrapper | Wrapper Package for Design of Experiments Functionality |
| DoEstRare | Rare Variant Association Test Based on Position Density Estimation |
| doex | One-Way Heteroscedastic ANOVA Tests |
| doFuture | A Universal Foreach Parallel Adaptor using the Future API of the 'future' Package |
| doMC | Foreach Parallel Adaptor for 'parallel' |
| Dominance | A Package to Calculate and Visualize Dominance Hierarchies |
| domino | R Console Bindings for the 'Domino Command-Line Client' |
| doMPI | Foreach Parallel Adaptor for the Rmpi Package |
| doParallel | Foreach Parallel Adaptor for the 'parallel' Package |
| doRedis | Foreach parallel adapter for the rredis package |
| doremi | Dynamics of Return to Equilibrium During Multiple Inputs |
| doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |
| DOS | Design of Observational Studies |
| DoseFinding | Planning and Analyzing Dose Finding Experiments |
| doSNOW | Foreach Parallel Adaptor for the 'snow' Package |
| dosresmeta | Multivariate Dose-Response Meta-Analysis |
| dostats | Compute Statistics Helper Functions |
| DOT | Render and Export DOT Graphs in R |
| DoTC | Distribution of Typicality Coefficients |
| dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |
| dotenv | Load Environment Variables from '.env' |
| dotwhisker | Dot-and-Whisker Plots of Regression Results |
| doubcens | Survivor Function Estimation for Doubly Interval-Censored Failure Time Data |
| double.truncation | Analysis of Doubly-Truncated Data |
| DoubleCone | Test Against Parametric Regression Function |
| DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |
| DOvalidation | Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation |
| Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |
| downloader | Download Files over HTTP and HTTPS |
| downscale | Downscaling Species Occupancy |
| downsize | A Tool to Downsize Large Workflows for Testing |
| dpa | Dynamic Path Approach |
| dparser | Port of 'Dparser' Package |
| DPBBM | Dirichlet Process Beta-Binomial Mixture |
| dpglasso | Primal Graphical Lasso |
| Dpit | Distribution Pitting |
| dplR | Dendrochronology Program Library in R |
| dplRCon | Concordance for Dendroclimatology |
| dplyr | A Grammar of Data Manipulation |
| dplyr.teradata | A 'Teradata' Backend for 'dplyr' |
| dplyrAssist | RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr' |
| dpmixsim | Dirichlet Process Mixture Model Simulation for Clustering and Image Segmentation |
| dpmr | Data Package Manager for R |
| DPP | Inference of Parameters of Normal Distributions from a Mixture of Normals |
| DPpackage | Bayesian Nonparametric Modeling in R |
| dprint | Print Tabular Data to Graphics Device |
| DPtree | Dirichlet-Based Polya Tree |
| DPWeibull | Dirichlet Process Weibull Mixture Model for Survival Data |
| dqrng | Fast Pseudo Random Number Generators |
| dr | Methods for Dimension Reduction for Regression |
| dr4pl | Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model |
| dragonking | Statistical Tools to Identify Dragon Kings |
| dragulaR | Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library' |
| drake | A Pipeline Toolkit for Reproducible Computation at Scale |
| drat | 'Drat' R Archive Template |
| draw | Wrapper Functions for Producing Graphics |
| drawExpression | Visualising R syntax through graphics |
| DRaWR | Discriminative Random Walk with Restart |
| DrBats | Data Representation: Bayesian Approach That's Sparse |
| drc | Analysis of Dose-Response Curves |
| DREGAR | Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR) |
| drfit | Dose-Response Data Evaluation |
| drgee | Doubly Robust Generalized Estimating Equations |
| driftR | Drift Correcting Water Quality Data |
| DrillR | R Driver for Apache Drill |
| DrImpute | Imputing Dropout Events in Single-Cell RNA-Sequencing Data |
| DrInsight | Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data |
| DRIP | Discontinuous Regression and Image Processing |
| drLumi | Multiplex Immunoassays Data Analysis |
| drmdel | Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples |
| dropR | Analyze Drop Out of an Experiment or Survey |
| droptest | Simulates LOX Drop Testing |
| DRR | Dimensionality Reduction via Regression |
| drsmooth | Dose-Response Modeling with Smoothing Splines |
| drtmle | Doubly-Robust Nonparametric Estimation and Inference |
| DrugClust | Implementation of a Machine Learning Framework for Predicting Drugs Side Effects |
| drugCombo | Drug Interaction Modeling Based on Loewe Additivity Following Harbron's Approach |
| ds | Descriptive Statistics |
| DSAIDE | Dynamical Systems Approach to Infectious Disease Epidemiology |
| DSAIRM | Dynamical Systems Approach to Immune Response Modeling |
| dsample | Discretization-Based Direct Random Sample Generation |
| DSBayes | Bayesian subgroup analysis in clinical trials |
| dse | Dynamic Systems Estimation (Time Series Package) |
| DSL | Distributed Storage and List |
| dslabs | Data Science Labs |
| dslice | Dynamic Slicing |
| dsm | Density Surface Modelling of Distance Sampling Data |
| dsmodels | A Language to Facilitate Simulation and Visualization of Two-Dimensional Dynamical Systems |
| DSpat | Spatial Modelling for Distance Sampling Data |
| dsr | Compute Directly Standardized Rates, Ratios and Differences |
| dsrTest | Tests and Confidence Intervals on Directly Standardized Rates for Several Methods |
| DSsim | Distance Sampling Simulations |
| dst | Using Dempster-Shafer Theory |
| DstarM | Analyze Two Choice Reaction Time Data with the D*M Method |
| DStree | Recursive Partitioning for Discrete-Time Survival Trees |
| dSVA | Direct Surrogate Variable Analysis |
| DSviaDRM | Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms |
| DT | A Wrapper of the JavaScript Library 'DataTables' |
| dtables | Simplifying Descriptive Frequencies and Statistics |
| dtangle | Cell Type Deconvolution from Gene Expressions |
| DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |
| DtD | Distance to Default |
| DTDA | Doubly truncated data analysis |
| DTDA.ni | Doubly Truncated Data Analysis, Non Iterative |
| dti | Analysis of Diffusion Weighted Imaging (DWI) Data |
| DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |
| DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |
| dtp | Dynamic Panel Threshold Model |
| dtplyr | Data Table Back-End for 'dplyr' |
| DTR | Estimation and Comparison of Dynamic Treatment Regimes |
| dtree | Decision Trees |
| DTRlearn | Learning Algorithms for Dynamic Treatment Regimes |
| DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning |
| dtt | Discrete Trigonometric Transforms |
| dtw | Dynamic Time Warping Algorithms |
| DTWBI | Imputation of Time Series Based on Dynamic Time Warping |
| dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |
| dtwSat | Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis |
| DTWUMI | Imputation of Multivariate Time Series Based on Dynamic Time Warping |
| duawranglr | Securely Wrangle Dataset According to Data Usage Agreement |
| dub | Unpacking Assignment for Lists via Pattern Matching |
| duckduckr | Simple Client for the DuckDuckGo Instant Answer API |
| dummies | Create dummy/indicator variables flexibly and efficiently |
| dummy | Automatic Creation of Dummies with Support for Predictive Modeling |
| dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |
| DunnettTests | Software implementation of step-down and step-up Dunnett test procedures |
| dupiR | Bayesian inference from count data using discrete uniform priors |
| DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |
| dvmisc | Faster Computation of Common Statistics and Miscellaneous Functions |
| dwapi | A Client for 'data.world' REST API |
| DWDLargeR | Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination |
| DWLasso | Degree Weighted Lasso |
| DWreg | Parametric Regression for Discrete Response |
| dyads | Dyadic Network Analysis |
| dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |
| Dykstra | Quadratic Programming using Cyclic Projections |
| DYM | Did You Mean? |
| dyn | Time Series Regression |
| dynamac | Dynamic Simulation and Testing for Single-Equation ARDL Models |
| DynamicDistribution | Dynamically visualized probability distributions and their moments |
| DynamicGP | Modelling and Analysis of Dynamic Computer Experiments |
| dynamicGraph | dynamicGraph |
| dynamichazard | Dynamic Hazard Models using State Space Models |
| dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |
| dynamo | Fit a Stochastic Dynamical Array Model to Array Data |
| dynatopmodel | Implementation of the Dynamic TOPMODEL Hydrological Model |
| dynaTree | Dynamic Trees for Learning and Design |
| dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |
| DynClust | Denoising and clustering for dynamical image sequence (2D or 3D)+T |
| dyncomp | Complexity of Short and Coarse-Grained Time Series |
| dynCorr | Dynamic Correlation Package |
| dynetNLAResistance | Resisting Neighbor Label Attack in a Dynamic Network |
| dynfrail | Fitting Dynamic Frailty Models with the EM Algorithm |
| dynia | Fit Dynamic Intervention Model |
| dynlm | Dynamic Linear Regression |
| DynNom | Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models |
| dynOmics | Fast Fourier Transform to Identify Associations Between Time Course Omics Data |
| dynpanel | Dynamic Panel Data Models |
| dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |
| dynprog | Dynamic Programming Domain-Specific Language |
| dynr | Dynamic Modeling in R |
| dynRB | Dynamic Range Boxes |
| dynsbm | Dynamic Stochastic Block Models |
| dynsim | Dynamic Simulations of Autoregressive Relationships |
| dynsurv | Dynamic Models for Survival Data |
| DynTxRegime | Methods for Estimating Optimal Dynamic Treatment Regimes |
| dynutils | Common Functionality for the 'dynverse' Packages |
| DySeq | Functions for Dyadic Sequence Analyses |
| DZEXPM | Estimation and Prediction of Skewed Spatial Processes |
| e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |
| eaf | Plots of the Empirical Attainment Function |
| Eagle | Multiple Locus Association Mapping on a Genome-Wide Scale |
| EAinference | Estimator Augmentation and Simulation-Based Inference |
| eAnalytics | Dynamic Web-Based Analytics for the Energy Industry |
| earlygating | Properties of Bayesian Early Gating Designs |
| earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak |
| earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |
| earth | Multivariate Adaptive Regression Splines |
| earthtones | Derive a Color Palette from a Particular Location on Earth |
| EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |
| easyAHP | Analytic Hierarchy Process (AHP) |
| easyanova | Analysis of Variance and Other Important Complementary Analyses |
| easyCODA | Compositional Data Analysis in Practice |
| easycsv | Load Multiple 'csv' and 'txt' Tables |
| easyDes | An Easy Way to Descriptive Analysis |
| easyformatr | Tools for Building R Formats |
| EasyHTMLReport | EasyHTMLReport |
| EasyMARK | Utility functions for working with mark-recapture data |
| EasyMx | Easy Model-Builder Functions for 'OpenMx' |
| easyNCDF | Tools to Easily Read/Write NetCDF Files into/from Multidimensional R Arrays |
| easynls | Easy Nonlinear Model |
| easypackages | Easy Loading and Installing of Packages |
| easypower | Sample Size Estimation for Experimental Designs |
| easyPubMed | Search and Retrieve Scientific Publication Records from PubMed |
| easyreg | Easy Regression |
| easySdcTable | Easy Interface to the Statistical Disclosure Control Package 'sdcTable' |
| easySVG | An Easy SVG Basic Elements Generator |
| easyVerification | Ensemble Forecast Verification for Large Data Sets |
| eba | Elimination-by-Aspects Models |
| ebal | Entropy reweighting to create balanced samples |
| EBASS | Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information |
| EbayesThresh | Empirical Bayes Thresholding and Related Methods |
| ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |
| EBEN | Empirical Bayesian Elastic Net |
| ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |
| EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |
| ebimetagenomics | EBI Metagenomics Portal |
| EBMAforecast | Ensemble BMA Forecasting |
| ebmc | Ensemble-Based Methods for Class Imbalance Problem |
| EBrank | Empirical Bayes Ranking |
| ebSNP | Genotyping and SNP calling using single-sample next generation sequencing data |
| ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW) |
| ECctmc | Simulation from Endpoint-Conditioned Continuous Time Markov Chains |
| ecd | Elliptic Lambda Distribution and Option Pricing Model |
| Ecdat | Data Sets for Econometrics |
| ecdfHT | Empirical CDF for Heavy Tailed Data |
| ecespa | Functions for Spatial Point Pattern Analysis |
| ECFsup | Equal Covariance Functions Testing by L2-Norm and Sup-Norm |
| Ecfun | Functions for Ecdat |
| ECharts2Shiny | Embedding Interactive Charts Generated with ECharts Library into Shiny Applications |
| echarts4r | Create Interactive Graphs with 'Echarts JavaScript' Version 4 |
| eChem | Simulations for Electrochemistry Experiments |
| echo.find | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) |
| echogram | Echogram Visualisation and Analysis |
| echor | Access EPA 'ECHO' Data |
| ecipex | Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models |
| ECLRMC | Ensemble Correlation-Based Low-Rank Matrix Completion |
| eclust | Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data |
| ecm | Build Error Correction Models |
| eco | Ecological Inference in 2x2 Tables |
| ecodist | Dissimilarity-Based Functions for Ecological Analysis |
| ecoengine | Programmatic Interface to the Web Service Methods Provided by UC Berkeley's Natural History Data |
| EcoGenetics | Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
| Ecohydmod | Ecohydrological Modelling |
| EcoHydRology | A Community Modeling Foundation for Eco-Hydrology |
| EcoIndR | Ecological Indicators |
| ECoL | Complexity Measures for Classification Problems |
| ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |
| ecolottery | Coalescent-Based Simulation of Ecological Communities |
| EconDemand | General Analysis of Various Economics Demand Systems |
| econet | Estimation of Parameter-Dependent Network Centrality Measures |
| EcoNetGen | Simulate and Sample from Ecological Interaction Networks |
| econullnetr | Null Model Analysis for Ecological Networks |
| ecoreg | Ecological Regression using Aggregate and Individual Data |
| ecoseries | An R Interface to Brazilian Central Bank and Sidra APIs and the IPEA Data |
| ecosim | Toolbox for Aquatic Ecosystem Modeling |
| EcoSimR | Null Model Analysis for Ecological Data |
| ECOSolveR | Embedded Conic Solver in R |
| ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |
| ecospat | Spatial Ecology Miscellaneous Methods |
| ecotox | Analysis of Ecotoxicology |
| ecotoxicology | Methods for Ecotoxicology |
| EcoTroph | EcoTroph R package |
| ecoval | Procedures for Ecological Assessment of Surface Waters |
| EcoVirtual | Simulation of Ecological Models |
| ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |
| ecr | Evolutionary Computation in R |
| ectotemp | Quantitative Estimates of Small Ectotherm Temperature Regulation Effectiveness |
| EDA | Energy Decomposition Analysis |
| eda4treeR | Experimental Design and Analysis for Tree Improvement |
| edarf | Exploratory Data Analysis using Random Forests |
| edcc | Economic Design of Control Charts |
| edci | Edge Detection and Clustering in Images |
| edeaR | Exploratory and Descriptive Event-Based Data Analysis |
| edeR | Email Data Extraction Using R |
| edesign | Maximum Entropy Sampling |
| edf | Read Data from European Data Format (EDF and EDF+) Files |
| EDFIR | Estimating Discrimination Factors |
| edfReader | Reading EDF(+) and BDF(+) Files |
| edfun | Creating Empirical Distribution Functions |
| edgar | Platform for EDGAR Filing Management |
| edgarWebR | SEC Filings Access |
| edgebundleR | Circle Plot with Bundled Edges |
| edgeCorr | Spatial Edge Correction |
| edgeRun | More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data |
| EDISON | Network Reconstruction and Changepoint Detection |
| editData | 'RStudio' Addin for Editing a 'data.frame' |
| editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |
| eDMA | Dynamic Model Averaging with Grid Search |
| EDMeasure | Energy-Based Dependence Measures |
| edpclient | Empirical Data Platform Client |
| EDR | Estimation of the Effective Dimension Reduction ('EDR') Space |
| edrGraphicalTools | Provides Tools for Dimension Reduction Methods |
| edstan | Stan Models for Item Response Theory |
| EdSurvey | Analysis of NCES Education Survey and Assessment Data |
| educineq | Compute and Decompose Inequality in Education |
| eechidna | Exploring Election and Census Highly Informative Data Nationally for Australia |
| eefAnalytics | Analysing Education Trials |
| eegkit | Toolkit for Electroencephalography Data |
| eegkitdata | Data for package eegkit |
| eel | Extended Empirical Likelihood |
| EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |
| eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |
| eeptools | Convenience Functions for Education Data |
| eesim | Simulate and Evaluate Time Series for Environmental Epidemiology |
| EFAutilities | Utility Functions for Exploratory Factor Analysis |
| EFDR | Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images |
| effectFusion | Bayesian Effect Fusion for Categorical Predictors |
| EffectLiteR | Average and Conditional Effects |
| effectR | Predicts Oomycete Effectors |
| effects | Effect Displays for Linear, Generalized Linear, and Other Models |
| effectsizescr | Indices for Single-Case Research |
| EffectsRelBaseline | Test changes of a grouped response relative to baseline |
| EffectStars | Visualization of Categorical Response Models |
| EffectStars2 | Effect Stars |
| EffectTreat | Prediction of Therapeutic Success |
| EfficientMaxEigenpair | Efficient Initials for Computing the Maximal Eigenpair |
| efflog | The Causal Effects for a Causal Loglinear Model |
| effsize | Efficient Effect Size Computation |
| efreadr | Read European Eddy Fluxes CSV Files |
| EFS | Tool for Ensemble Feature Selection |
| efts | High-Level Functions to Read and Write Ensemble Forecast Time Series in netCDF |
| ega | Error Grid Analysis |
| egcm | Engle-Granger Cointegration Models |
| egg | Extensions for 'ggplot2': Custom Geom, Plot Alignment, Symmetrised Scale, and Fixed Panel Size |
| eggCounts | Hierarchical Modelling of Faecal Egg Counts |
| egonet | Tool for ego-centric measures in Social Network Analysis |
| egor | Import and Analyse Ego-Centered Network Data |
| egoTERGM | Estimation of Ego-Temporal Exponential Random Graph Models via Expectation Maximization (EM) |
| EGRET | Exploration and Graphics for RivEr Trends (EGRET) |
| EGRETci | Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals |
| eha | Event History Analysis |
| eHOF | Extended HOF (Huisman-Olff-Fresco) Models |
| EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool |
| ei | Ecological Inference |
| EIAdata | R Wrapper for the Energy Information Administration (EIA) API |
| eiCompare | Compares EI, Goodman, RxC Estimates |
| eigeninv | Generates (dense) matrices that have a given set of eigenvalues |
| eigenmodel | Semiparametric Factor and Regression Models for Symmetric Relational Data |
| eigenprcomp | Computes confidence intervals for principal components |
| eikosograms | The Picture of Probability |
| EILA | Efficient Inference of Local Ancestry |
| eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |
| eive | An Algorithm for Reducing Errors-in-Variable Bias in Simple Linear Regression |
| eivtools | Measurement Error Modeling Tools |
| eiwild | Ecological Inference with individual and aggregate data |
| eixport | Export Emissions to Atmospheric Models |
| EKMCMC | MCMC Procedures for Estimating Enzyme Kinetics Constants |
| EL | Two-sample Empirical Likelihood |
| EL2Surv | Empirical Likelihood (EL) for Comparing Two Survival Functions |
| elasso | Enhanced Least Absolute Shrinkage and Selection Operator Regression Model |
| ElastH | Replicar metodologia de SPE/MF para calculo de elasticidade de receita |
| elastic | General Purpose Interface to 'Elasticsearch' |
| elasticIsing | Ising Network Estimation using Elastic Net and k-Fold Cross-Validation |
| elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |
| elasticsearchr | A Lightweight Interface for Interacting with Elasticsearch from R |
| elec | Collection of functions for statistical election audits |
| elec.strat | Functions for election audits using stratified random samples |
| elect | Estimation of Life Expectancies Using Multi-State Models |
| elections | USA Presidential Elections Data |
| electionsBR | R Functions to Download and Clean Brazilian Electoral Data |
| electoral | Allocating Seats Methods and Party System Scores |
| elementR | An Framework for Reducing Elemental LAICPMS Data from Solid Structures |
| ElemStatLearn | Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |
| elevatr | Access Elevation Data from Various APIs |
| elexr | Load Associated Press Election Results with Elex |
| elhmc | Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo |
| elliplot | Ellipse Summary Plot of Quantiles |
| ellipse | Functions for Drawing Ellipses and Ellipse-Like Confidence Regions |
| ellipsis | Tools for Working with ... |
| elliptic | Weierstrass and Jacobi Elliptic Functions |
| elmNNRcpp | The Extreme Learning Machine Algorithm |
| ELMR | Extreme Machine Learning (ELM) |
| ELMSO | Implementation of the Efficient Large-Scale Online Display Advertising Algorithm |
| elo | Elo Ratings |
| EloChoice | Preference Rating for Visual Stimuli Based on Elo Ratings |
| EloOptimized | Optimized Elo Rating Method for Obtaining Dominance Ranks |
| EloRating | Animal Dominance Hierarchies by Elo Rating |
| ElstonStewart | Elston-Stewart Algorithm |
| ELT | Experience Life Tables |
| ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |
| EM.Fuzzy | EM Algorithm for Maximum Likelihood Estimation by Non-Precise Information |
| EMA | Easy Microarray Data Analysis |
| EMAtools | Data Management Tools for Real-Time Monitoring/Ecological Momentary Assessment Data |
| EMbC | Expectation-Maximization Binary Clustering |
| embed | Extra Recipes for Encoding Categorical Predictors |
| embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |
| EMC | Evolutionary Monte Carlo (EMC) algorithm |
| Emcdf | Computation and Visualization of Empirical Joint Distribution (Empirical Joint CDF) |
| EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |
| EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |
| emdbook | Support Functions and Data for "Ecological Models and Data" |
| emdi | Estimating and Mapping Disaggregated Indicators |
| emdist | Earth Mover's Distance |
| emg | Exponentially Modified Gaussian (EMG) Distribution |
| emhawkes | Exponential Multivariate Hawkes Model |
| emil | Evaluation of Modeling without Information Leakage |
| emIRT | EM Algorithms for Estimating Item Response Theory Models |
| EmissV | Vehicular Emissions by Top-Down Methods |
| EmiStatR | Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems |
| EML | Read and Write Ecological Metadata Language Files |
| eMLEloglin | Fitting log-Linear Models in Sparse Contingency Tables |
| emma | Evolutionary model-based multiresponse approach |
| EMMAgeo | End-Member Modelling of Grain-Size Data |
| emme2 | Read and Write to an EMME/2 databank |
| emmeans | Estimated Marginal Means, aka Least-Squares Means |
| EMMIXcskew | Fitting Mixtures of CFUST Distributions |
| EMMIXgene | A Mixture Model-Based Approach to the Clustering of Microarray Expression Data |
| EMMIXmfa | Mixture Models with Component-Wise Factor Analyzers |
| EMMIXskew | The EM Algorithm and Skew Mixture Distribution |
| EMMIXuskew | Fitting Unrestricted Multivariate Skew t Mixture Models |
| EMMLi | A Maximum Likelihood Approach to the Analysis of Modularity |
| EMMREML | Fitting Mixed Models with Known Covariance Structures |
| emoa | Evolutionary Multiobjective Optimization Algorithms |
| emojifont | Emoji and Font Awesome in Graphics |
| emon | Tools for Environmental and Ecological Survey Design |
| emov | Eye Movement Analysis Package for Fixation and Saccade Detection |
| EMP | Expected Maximum Profit Classification Performance Measure |
| empirical | Empirical Probability Density Functions and Empirical Cumulative Distribution Functions |
| EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |
| empiricalFDR.DESeq2 | Simulation-Based False Discovery Rate in RNA-Seq |
| emplik | Empirical Likelihood Ratio for Censored/Truncated Data |
| emplik2 | Empirical Likelihood Ratio Test for Two Samples with Censored Data |
| ems | Epimed Solutions Collection for Data Editing, Analysis, and Benchmark of Health Units |
| EMSaov | The Analysis of Variance with EMS |
| EMSC | Extended Multiplicative Signal Correction |
| EMSHS | EM Algorithm for Bayesian Shrinkage Approach with Structural Information Incorporated |
| EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |
| emulator | Bayesian Emulation of Computer Programs |
| emuR | Main Package of the EMU Speech Database Management System |
| EMVS | The Expectation-Maximization Approach to Bayesian Variable Selection |
| enaR | Tools for Ecological Network Analysis |
| enc | Portable Tools for 'UTF-8' Character Data |
| EncDNA | Encoding of Nucleotide Sequences into Numeric Feature Vectors |
| encode | Represent Ordered Lists and Pairs as Strings |
| endogenous | Classical Simultaneous Equation Models |
| endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |
| endorse | Bayesian Measurement Models for Analyzing Endorsement Experiments |
| endtoend | Transmissions and Receptions in an End to End Network |
| energy | E-Statistics: Multivariate Inference via the Energy of Data |
| EnergyOnlineCPM | Distribution Free Multivariate Control Chart Based on Energy Test |
| energyr | Data Published by the United States Federal Energy Regulatory Commission |
| enetLTS | Robust and Sparse Methods for High Dimensional Linear and Logistic Regression |
| eNetXplorer | Quantitative Exploration of Elastic Net Families for Generalized Linear Models |
| english | Translate Integers into English |
| EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |
| engsoccerdata | English and European Soccer Results 1871-2016 |
| ENiRG | Ecological Niche in R and GRASS |
| ENMeval | Automated Runs and Evaluations of Ecological Niche Models |
| ENmisc | Neuwirth miscellaneous |
| enpls | Ensemble Partial Least Squares Regression |
| enrichR | Provides an R Interface to 'Enrichr' |
| enrichvs | Enrichment assessment of virtual screening approaches |
| enrichwith | Methods to Enrich R Objects with Extra Components |
| EnsCat | Clustering of Categorical Data |
| EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |
| ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |
| EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |
| ensembleEN | Ensembling Regularized Linear Models |
| ensembleMOS | Ensemble Model Output Statistics |
| EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning |
| EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners |
| ensemblepp | Ensemble Postprocessing Data Sets |
| ensembleR | Ensemble Models in R |
| ensurer | Ensure Values at Runtime |
| entropart | Entropy Partitioning to Measure Diversity |
| entropy | Estimation of Entropy, Mutual Information and Related Quantities |
| EntropyEstimation | Estimation of Entropy and Related Quantities |
| EntropyExplorer | Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression |
| envalysis | Miscellaneous Functions for Environmental Analyses |
| EnvCpt | Detection of Structural Changes in Climate and Environment Time Series |
| envDocument | Document the R Working Environment |
| enveomics.R | Various Utilities for Microbial Genomics and Metagenomics |
| enviGCMS | GC/LC-MS Data Analysis for Environmental Science |
| enviPat | Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry |
| enviPick | Peak Picking for High Resolution Mass Spectrometry Data |
| envirem | Generation of ENVIREM Variables |
| EnviroPRA | Environmental Probabilistic Risk Assessment Tools |
| EnviroStat | Statistical Analysis of Environmental Space-Time Processes |
| envlpaster | Enveloping the Aster Model |
| envnames | Track User-Defined Environment Names |
| EnvNicheR | Niche Estimation |
| EnvStats | Package for Environmental Statistics, Including US EPA Guidance |
| epade | Easy Plots |
| epandist | Statistical Functions for the Censored and Uncensored Epanechnikov Distribution |
| epanet2toolkit | Call 'EPANET' Functions to Simulate Pipe Networks |
| epanetReader | Read Epanet Files into R |
| ePCR | Ensemble Penalized Cox Regression for Survival Prediction |
| Epi | A Package for Statistical Analysis in Epidemiology |
| epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |
| EpiBayes | Implements Hierarchical Bayesian Models for Epidemiological Applications |
| epicontacts | Handling, Visualisation and Analysis of Epidemiological Contacts |
| EpiContactTrace | Epidemiological Tool for Contact Tracing |
| EpiCurve | Plot an Epidemic Curve |
| epidata | Tools to Retrieve Economic Policy Institute Data Library Extracts |
| epiDisplay | Epidemiological Data Display Package |
| EpiDynamics | Dynamic Models in Epidemiology |
| EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves |
| epiflows | Predicting Disease Spread from Flow Data |
| EpiILM | Spatial and Network Based Individual Level Models for Epidemics |
| EpiILMCT | Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics |
| EpiModel | Mathematical Modeling of Infectious Disease Dynamics |
| epinet | Epidemic/Network-Related Tools |
| epiphy | Analysis of Plant Disease Epidemics |
| epiR | Tools for the Analysis of Epidemiological Data |
| episcan | Scan Pairwise Epistasis |
| episensr | Basic Sensitivity Analysis of Epidemiological Results |
| episheet | Rothman's Episheet |
| episode | Estimation with Penalisation in Systems of Ordinary Differential Equations |
| episplineDensity | Density Estimation with Soft Information by Exponential Epi-splines |
| epistasis | Detecting Epistatic Selection with Partially Observed Genotype Data |
| EpiStats | Tools for Epidemiologists |
| EpistemicGameTheory | Constructing an Epistemic Model for the Games with Two Players |
| epitab | Flexible Contingency Tables for Epidemiology |
| epitools | Epidemiology Tools |
| epitrix | Small Helpers and Tricks for Epidemics Analysis |
| Eplot | Plotting longitudinal series |
| eplusr | A Toolkit for Using Whole Building Simulation Program 'EnergyPlus' |
| eply | Apply a Function Over Expressions |
| epoc | EPoC (Endogenous Perturbation analysis of Cancer) |
| epos | Epilepsy Ontology Similarities |
| epr | Easy Polynomial Regression |
| epubr | Read EPUB File Metadata and Text |
| epxToR | Import 'Epidata' XML Files '.epx' |
| EQL | Extended-Quasi-Likelihood-Function (EQL) |
| eqs2lavaan | EQS Output Conversion to lavaan Functions |
| eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |
| equalCovs | Testing the Equality of Two Covariance Matrices |
| Equalden.HD | Testing the Equality of a High Dimensional Set of Densities |
| equaltestMI | Examine Measurement Invariance via Equivalence Testing and Projection Method |
| equate | Observed-Score Linking and Equating |
| equateIRT | IRT Equating Methods |
| equateMultiple | Equating of Multiple Forms |
| equivalence | Provides Tests and Graphics for Assessing Tests of Equivalence |
| EQUIVNONINF | Testing for Equivalence and Noninferiority |
| equSA | Estimate Directed and Undirected Graphical Models and Construct Networks |
| erah | Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics |
| erboost | Nonparametric Multiple Expectile Regression via ER-Boost |
| ercv | Fitting Tails by the Empirical Residual Coefficient of Variation |
| erer | Empirical Research in Economics with R |
| ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |
| ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |
| ergm.ego | Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data |
| ergm.rank | Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data |
| ergm.userterms | User-specified Terms for the statnet Suite of Packages |
| ergmharris | Local Health Department network data set |
| erhcv | Equi-Rank Hierarchical Clustering Validation |
| eRm | Extended Rasch Modeling |
| ERP | Significance Analysis of Event-Related Potentials Data |
| erp.easy | Event-Related Potential (ERP) Data Exploration Made Easy |
| erpR | Event-related potentials (ERP) analysis, graphics and utility functions |
| errint | Builds Error Intervals |
| errorist | Automatically Search Errors or Warnings |
| errorizer | Function Errorizer |
| errorlocate | Locate Errors with Validation Rules |
| errors | Uncertainty Propagation for R Vectors |
| ERSA | Exploratory Regression 'Shiny' App |
| ES | Edge Selection |
| esaBcv | Estimate Number of Latent Factors and Factor Matrix for Factor Analysis |
| esaddle | Extended Empirical Saddlepoint Density Approximation |
| esaps | Indicators of Electoral Systems and Party Systems |
| esc | Effect Size Computation for Meta Analysis |
| esDesign | Adaptive Enrichment Designs with Sample Size Re-Estimation |
| ESEA | ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis |
| eseis | Environmental Seismology Toolbox |
| ESG | ESG - A package for asset projection |
| ESGtoolkit | Toolkit for the simulation of financial assets and interest rates models |
| eshrink | Shrinkage for Effect Estimation |
| ESKNN | Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation |
| esmisc | Misc Functions of Eduard Szöcs |
| esmprep | Data Preparation During and After the Use of the Experience Sampling Methodology (ESM) |
| esquisse | Explore and Visualize Your Data Interactively |
| esreg | Joint Quantile and Expected Shortfall Regression |
| essHist | The Essential Histogram |
| essurvey | Download Data from the European Social Survey on the Fly |
| estatapi | R Interface to e-Stat API |
| EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |
| ESTER | Efficient Sequential Testing with Evidence Ratios |
| EstHer | Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection |
| estimability | Tools for Assessing Estimability of Linear Predictions |
| EstimateGroupNetwork | Perform the Joint Graphical Lasso and Selects Tuning Parameters |
| estimatr | Fast Estimators for Design-Based Inference |
| EstMix | Tumor Clones Percentage Estimations |
| estout | Estimates Output |
| estprod | Estimation of Production Functions |
| EstSimPDMP | Estimation and Simulation for PDMPs |
| estudy2 | An Implementation of Parametric and Nonparametric Event Study |
| esvis | Visualization and Estimation of Effect Sizes |
| etable | Easy Table |
| ETAS | Modeling Earthquake Data Using ETAS Model |
| etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes |
| ETC | Equivalence to control |
| ether | Interaction with the 'Ethereum' Blockchain |
| EthSEQ | Ethnicity Annotation from Whole Exome Sequencing Data |
| etl | Extract-Transform-Load Framework for Medium Data |
| ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |
| etm | Empirical Transition Matrix |
| etma | Epistasis Test in Meta-Analysis |
| etrunct | Computes Moments of Univariate Truncated t Distribution |
| etseed | Client for 'etcd', a 'Key-value' Database |
| eulerian | eulerian: A package to find eulerian paths from graphs |
| eulerr | Area-Proportional Euler and Venn Diagrams with Circles or Ellipses |
| europepmc | R Interface to the Europe PubMed Central RESTful Web Service |
| europop | Historical Populations of European Cities, 1500-1800 |
| EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |
| eurostat | Tools for Eurostat Open Data |
| eva | Extreme Value Analysis with Goodness-of-Fit Testing |
| EvalEst | Dynamic Systems Estimation - Extensions |
| evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |
| EvaluationMeasures | Collection of Model Evaluation Measure Functions |
| evaluator | Quantified Risk Assessment Toolkit |
| EValue | Sensitivity Analyses for Unmeasured Confounding in Observational Studies and Meta-Analyses |
| Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |
| evclass | Evidential Distance-Based Classification |
| evclust | Evidential Clustering |
| EvCombR | Evidence Combination in R |
| evd | Functions for Extreme Value Distributions |
| evdbayes | Bayesian Analysis in Extreme Value Theory |
| event | Event History Procedures and Models |
| eventdataR | Event Data Repository |
| eventInterval | Sequential Event Interval Analysis |
| events | Store and manipulate event data |
| EventStudy | Event Study Analysis |
| evian | Evidential Analysis of Genetic Association Data |
| evidence | Analysis of Scientific Evidence Using Bayesian and Likelihood Methods |
| evidenceFactors | Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies |
| evir | Extreme Values in R |
| evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |
| evobiR | Comparative and Population Genetic Analyses |
| evolqg | Tools for Evolutionary Quantitative Genetics |
| EvolutionaryGames | Important Concepts of Evolutionary Game Theory |
| evolvability | Calculation of Evolvability Parameters |
| Evomorph | Evolutionary Morphometric Simulation |
| evoper | Evolutionary Parameter Estimation for 'Repast Simphony' Models |
| EvoRAG | Evolutionary Rates Across Gradients |
| evt0 | Mean of order p, peaks over random threshold Hill and high quantile estimates |
| evtree | Evolutionary Learning of Globally Optimal Trees |
| EW | Edgeworth Expansion |
| EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |
| ewoc | Escalation with Overdose Control |
| Exact | Unconditional Exact Test |
| exact2x2 | Exact Tests and Confidence Intervals for 2x2 Tables |
| exactci | Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases |
| ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |
| exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
| exactmeta | Exact fixed effect meta analysis |
| exactRankTests | Exact Distributions for Rank and Permutation Tests |
| exampletestr | Help for Writing Unit Tests Based on Function Examples |
| exams | Automatic Generation of Exams in R |
| ExceedanceTools | Confidence regions for exceedance sets and contour lines |
| excel.link | Convenient Data Exchange with Microsoft Excel |
| excerptr | Excerpt Structuring Comments from Your Code File and Set a Table of Contents |
| ExcessMass | Excess Mass Calculation and Plots |
| exCon | Interactive Exploration of Contour Data |
| excursions | Excursion Sets and Contour Credibility Regions for Random Fields |
| exif | Read EXIF Metadata from JPEGs |
| exifr | EXIF Image Data in R |
| exiftoolr | ExifTool Functionality from R |
| ExomeDepth | Calls Copy Number Variants from Targeted Sequence Data |
| exp2flux | Convert Gene EXPression Data to FBA FLUXes |
| ExPanDaR | Explore Panel Data Interactively |
| expandFunctions | Feature Matrix Builder |
| expands | Expanding Ploidy and Allele-Frequency on Nested Subpopulations |
| ExpDE | Modular Differential Evolution for Experimenting with Operators |
| ExpDes | Experimental Designs |
| ExpDes.pt | Pacote Experimental Designs (Portuguese) |
| experiment | R Package for Designing and Analyzing Randomized Experiments |
| expert | Modeling without data using expert opinion |
| expint | Exponential Integral and Incomplete Gamma Function |
| ExplainPrediction | Explanation of Predictions for Classification and Regression Models |
| explor | Interactive Interfaces for Results Exploration |
| exploreR | Tools for Quickly Exploring Data |
| expm | Matrix Exponential, Log, 'etc' |
| expoRkit | Expokit in R |
| ExPosition | Exploratory analysis with the singular value decomposition |
| expoTree | Calculate density dependent likelihood of a phylogenetic tree |
| expp | Spatial Analysis of Extra-Pair Paternity |
| ExpRep | Experiment Repetitions |
| exprso | Rapid Deployment of Machine Learning Algorithms |
| expsmooth | Data Sets from "Forecasting with Exponential Smoothing" |
| expss | Tables with Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics |
| exptest | Tests for Exponentiality |
| exreport | Fast, Reliable and Elegant Reproducible Research |
| EXRQ | Extreme Regression of Quantiles |
| exsic | Convenience Functions for Botanists to Create Specimens Indices |
| extdplyr | Data Manipulation Extensions of 'Dplyr' and 'Tidyr' |
| exteriorMatch | Constructs the Exterior Match from Two Matched Control Groups |
| extfunnel | Additional Funnel Plot Augmentations |
| extlasso | Maximum penalized likelihood estimation with extended lasso penalty |
| ExtMallows | An Extended Mallows Model and Its Hierarchical Version for Ranked Data Aggregation |
| extraBinomial | Extra-binomial approach for pooled sequencing data |
| extracat | Categorical Data Analysis and Visualization |
| extraDistr | Additional Univariate and Multivariate Distributions |
| extrafont | Tools for using fonts |
| extrafontdb | Package for holding the database for the extrafont package |
| extraTrees | Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression |
| ExtremeBounds | Extreme Bounds Analysis (EBA) |
| extremefit | Estimation of Extreme Conditional Quantiles and Probabilities |
| extRemes | Extreme Value Analysis |
| extremeStat | Extreme Value Statistics and Quantile Estimation |
| extremevalues | Univariate Outlier Detection |
| extremogram | Estimation of Extreme Value Dependence for Time Series Data |
| extWeibQuant | Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture |
| exuber | Econometric Analysis of Explosive Time Series |
| eyelinker | Load Raw Data from Eyelink Eye Trackers |
| eyetracking | Eyetracking Helper Functions |
| eyetrackingR | Eye-Tracking Data Analysis |
| ez | Easy Analysis and Visualization of Factorial Experiments |
| ezec | Easy Interface to Effective Concentration Calculations |
| ezglm | selects significant non-additive interaction between two variables using fast GLM implementation |
| ezknitr | Avoid the Typical Working Directory Pain When Using 'knitr' |
| ezsim | provide an easy to use framework to conduct simulation |
| ezsummary | Generate Data Summary in a Tidy Format |
| EZtune | Tunes AdaBoost, Support Vector Machines, and Gradient Boosting Machines |
| fabCI | FAB Confidence Intervals |
| fabricatr | Imagine Your Data Before You Collect It |
| face | Fast Covariance Estimation for Sparse Functional Data |
| facebook.S4 | Access to Facebook API V2 via a Set of S4 Classes |
| facerec | An Interface for Face Recognition |
| facilitation | A C++ Framework for Plant-Plant Interaction IBMs |
| FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |
| FactMixtAnalysis | Factor Mixture Analysis with covariates |
| FACTMLE | Maximum Likelihood Factor Analysis |
| FactoClass | Combination of Factorial Methods and Cluster Analysis |
| factoextra | Extract and Visualize the Results of Multivariate Data Analyses |
| FactoInvestigate | Automatic Description of Factorial Analysis |
| FactoMineR | Multivariate Exploratory Data Analysis and Data Mining |
| factoptd | Factorial Optimal Designs for Two-Colour cDNA Microarray Experiments |
| factorcpt | Simultaneous Change-Point and Factor Analysis |
| factorMerger | The Merging Path Plot |
| factorplot | Graphical Presentation of Simple Contrasts |
| factorQR | Bayesian quantile regression factor models |
| FactorsR | Identification of the Factors Affecting Species Richness |
| factorstochvol | Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models |
| Factoshiny | Perform Factorial Analysis from 'FactoMineR' with a Shiny Application |
| factualR | thin wrapper for the Factual.com server API |
| FADA | Variable Selection for Supervised Classification in High Dimension |
| FAdist | Distributions that are Sometimes Used in Hydrology |
| Fahrmeir | Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz |
| fail | File Abstraction Interface Layer (FAIL) |
| faisalconjoint | Faisal Conjoint Model: A New Approach to Conjoint Analysis |
| fakemake | Mock the Unix Make Utility |
| fakeR | Simulates Data from a Data Frame of Different Variable Types |
| falcon | Finding Allele-Specific Copy Number in Next-Generation Sequencing Data |
| falconx | Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data |
| fam2r | From 'Familias' to R |
| fame | Interface for FAME Time Series Database |
| FamEvent | Family Age-at-Onset Data Simulation and Penetrance Estimation |
| Familias | Probabilities for Pedigrees Given DNA Data |
| FAMILY | A Convex Formulation for Modeling Interactions with Strong Heredity |
| FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |
| famSKATRC | Family Sequence Kernel Association Test for Rare and Common Variants |
| FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |
| fanc | Penalized Likelihood Factor Analysis via Nonconvex Penalty |
| fANCOVA | Nonparametric Analysis of Covariance |
| fancycut | A Fancy Version of 'base::cut' |
| fanovaGraph | Building Kriging Models from FANOVA Graphs |
| fanplot | Visualisation of Sequential Probability Distributions Using Fan Charts |
| fansi | ANSI Control Sequence Aware String Functions |
| FAOSTAT | Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations |
| faoutlier | Influential Case Detection Methods for Factor Analysis and Structural Equation Models |
| far | Modelization for Functional AutoRegressive Processes |
| faraway | Functions and Datasets for Books by Julian Faraway |
| farff | A Faster 'ARFF' File Reader and Writer |
| FarmSelect | Factor Adjusted Robust Model Selection |
| FarmTest | Factor Adjusted Robust Multiple Testing |
| farver | Vectorised Colour Conversion and Comparison |
| FASeg | Joint Segmentation of Correlated Time Series |
| fAsianOptions | Rmetrics - EBM and Asian Option Valuation |
| fasjem | A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models |
| fAssets | Rmetrics - Analysing and Modelling Financial Assets |
| fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |
| fasta | Fast Adaptive Shrinkage/Thresholding Algorithm |
| fastAdaboost | a Fast Implementation of Adaboost |
| FastBandChol | Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor |
| fastclime | A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector |
| fastcluster | Fast Hierarchical Clustering Routines for R and 'Python' |
| fastcmh | Significant Interval Discovery with Categorical Covariates |
| fastcox | Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm |
| fastdigest | Fast, Low Memory-Footprint Digests of R Objects |
| fastDummies | Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables |
| fasteraster | Raster Image Processing and Vector Recognition |
| fasterElasticNet | An Amazing Fast Way to Fit Elastic Net |
| fasterize | Fast Polygon to Raster Conversion |
| fastGHQuad | Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature |
| FastGP | Efficiently Using Gaussian Processes with Rcpp and RcppEigen |
| fastGraph | Fast Drawing and Shading of Graphs of Statistical Distributions |
| FastHCS | FastHCS Robust Algorithm for Principal Component Analysis |
| fastHICA | Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis |
| fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |
| FastImputation | Learn from Training Data then Quickly Fill in Missing Data |
| fastJT | Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies |
| FastKM | A Fast Multiple-Kernel Method Based on a Low-Rank Approximation |
| FastKNN | Fast k-Nearest Neighbors |
| fastLink | Fast Probabilistic Record Linkage with Missing Data |
| fastM | Fast Computation of Multivariate M-Estimators |
| fastmaRching | Fast Marching Method for Modelling Evolving Boundaries |
| fastmatch | Fast match() function |
| fastnet | Large-Scale Social Network Analysis |
| FastPCS | FastPCS Robust Fit of Multivariate Location and Scatter |
| fastpseudo | Fast Pseudo Observations |
| fastqcr | Quality Control of Sequencing Data |
| fastR | Foundations and Applications of Statistics Using R |
| fastR2 | Foundations and Applications of Statistics Using R (2nd Edition) |
| FastRCS | Fits the FastRCS Robust Multivariable Linear Regression Model |
| fastrtext | 'fastText' Wrapper for Text Classification and Word Representation |
| FastRWeb | Fast Interactive Framework for Web Scripting Using R |
| FastSF | Fast Structural Filtering |
| fastSOM | Fast Calculation of Spillover Measures |
| fastTextR | An Interface to the 'fastText' Library |
| fasttime | Fast Utility Function for Time Parsing and Conversion |
| fat2Lpoly | Two-Locus Family-Based Association Test with Polytomous Outcome |
| FateID | Quantification of Fate Bias in Multipotent Progenitors |
| FatTailsR | Kiener Distributions and Fat Tails in Finance |
| fauxpas | HTTP Error Helpers |
| favnums | A Dataset of Favourite Numbers |
| FAwR | Functions and Datasets for "Forest Analytics with R" |
| fbar | An Extensible Approach to Flux Balance Analysis |
| fBasics | Rmetrics - Markets and Basic Statistics |
| fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |
| FBFsearch | Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors |
| FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |
| fBonds | Rmetrics - Pricing and Evaluating Bonds |
| fbRads | Analyzing and Managing Facebook Ads from R |
| fbRanks | Association Football (Soccer) Ranking via Poisson Regression |
| fbroc | Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves |
| fc | Standard Evaluation-Based Multivariate Function Composition |
| fcd | Fused Community Detection |
| fCertificates | Basics of Certificates and Structured Products Valuation |
| FCGR | Fatigue Crack Growth in Reliability |
| fChange | Change Point Analysis in Functional Data |
| fclust | Fuzzy Clustering |
| fcm | Inference of Fuzzy Cognitive Maps (FCMs) |
| FCMapper | Fuzzy Cognitive Mapping |
| fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |
| fcr | Functional Concurrent Regression for Sparse Data |
| fcros | A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations |
| fcuk | The Ultimate Helper for Clumsy Fingers |
| FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |
| fda | Functional Data Analysis |
| fda.usc | Functional Data Analysis and Utilities for Statistical Computing |
| fdadensity | Functional Data Analysis for Density Functions by Transformation to a Hilbert Space |
| fdakma | Functional Data Analysis: K-Mean Alignment |
| fdaMixed | Functional Data Analysis in a Mixed Model Framework |
| fdANOVA | Analysis of Variance for Univariate and Multivariate Functional Data |
| fdapace | Functional Data Analysis and Empirical Dynamics |
| fdaPDE | Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations |
| fdasrvf | Elastic Functional Data Analysis |
| fdatest | Interval Testing Procedure for Functional Data |
| FDboost | Boosting Functional Regression Models |
| fdcov | Analysis of Covariance Operators |
| FDGcopulas | Multivariate Dependence with FDG Copulas |
| fDMA | Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes |
| fdrci | Permutation-Based FDR Point and Confidence Interval Estimation |
| fdrDiscreteNull | False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions |
| FDRreg | False discovery rate regression |
| FDRsampsize | Compute Sample Size that Meets Requirements for Average Power and FDR |
| FDRSeg | FDR-Control in Multiscale Change-Point Segmentation |
| fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |
| fds | Functional data sets |
| fdth | Frequency Distribution Tables, Histograms and Polygons |
| FeaLect | Scores Features for Feature Selection |
| feather | R Bindings to the Feather 'API' |
| feature | Local Inferential Feature Significance for Multivariate Kernel Density Estimation |
| featurefinder | Feature Finder |
| FeatureHashing | Creates a Model Matrix via Feature Hashing with a Formula Interface |
| features | Feature Extraction for Discretely-Sampled Functional Data |
| featurizer | Some Helper Functions that Help Create Features from Data |
| febr | Free Brazilian Repository for Open Soil Data |
| fechner | Fechnerian Scaling of Discrete Object Sets |
| fecR | Fishing Effort Calculator in R |
| FedData | Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources |
| federalregister | Client Package for the U.S. Federal Register API |
| fedregs | Text Analysis of the US Code of Federal Regulations |
| fedreporter | Interface to Federal 'RePORTER' API |
| FeedbackTS | Analysis of Feedback in Time Series |
| feedeR | Read RSS/Atom Feeds from R |
| fence | Using Fence Methods for Model Selection |
| FENmlm | Fixed Effects Nonlinear Maximum Likelihood Models |
| fergm | Estimation and Fit Assessment of Frailty Exponential Random Graph Models |
| fermicatsR | Fermi Large Area Telescope Catalogs |
| fetchR | Calculate Wind Fetch |
| fExoticOptions | Rmetrics - Pricing and Evaluating Exotic Option |
| fExpressCertificates | fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables |
| fExtremes | Rmetrics - Modelling Extreme Events in Finance |
| ff | Memory-Efficient Storage of Large Data on Disk and Fast Access Functions |
| ffbase | Basic Statistical Functions for Package 'ff' |
| FFD | Freedom from Disease |
| FField | Force field simulation for a set of points |
| ffmanova | Fifty-fifty MANOVA |
| ffstream | Forgetting Factor Methods for Change Detection in Streaming Data |
| FFTrees | Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees |
| fftw | Fast FFT and DCT Based on the FFTW Library |
| fftwtools | Wrapper for 'FFTW3' Includes: One-Dimensional Univariate, One-Dimensional Multivariate, and Two-Dimensional Transform |
| fgac | Generalized Archimedean Copula |
| FGalgorithm | Flury and Gautschi algorithms |
| fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
| fgof | Fast Goodness-of-fit Test |
| fgpt | Floating Grid Permutation Technique |
| FGSG | Feature Grouping and Selection Over an Undirected Graph |
| fgui | Function GUI |
| FHDI | Fractional Hot Deck and Fully Efficient Fractional Imputation |
| FHtest | Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class |
| FI | Provide functions for forest inventory calculations |
| FIACH | Retrospective Noise Control for fMRI |
| FIAR | Functional Integration Analysis in R |
| fICA | Classical, Reloaded and Adaptive FastICA Algorithms |
| fieldRS | Remote Sensing Field Work Tools |
| fields | Tools for Spatial Data |
| FieldSim | Random Fields (and Bridges) Simulations |
| fiery | A Lightweight and Flexible Web Framework |
| filehash | Simple Key-Value Database |
| filehashSQLite | Simple key-value database using SQLite |
| filelock | Portable File Locking |
| filematrix | File-Backed Matrix Class with Convenient Read and Write Access |
| filenamer | Easy Management of File Names |
| fileplyr | Chunk Processing or Split-Apply-Combine on Delimited Files and Distributed Dataframes |
| files | Effective File Navigation from the R Console |
| filesstrings | Handy File and String Manipulation |
| FILEST | Fine-Level Structure Simulator |
| filling | Matrix Completion, Imputation, and Inpainting Methods |
| fImport | Rmetrics - Importing Economic and Financial Data |
| finalfit | Quickly Create Elegant Regression Results Tables and Plots when Modelling |
| FinAna | Financial Analysis and Regression Diagnostic Analysis |
| FinancialInstrument | Financial Instrument Model Infrastructure and Meta-Data |
| FinancialMath | Financial Mathematics for Actuaries |
| FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |
| FinCal | Time Value of Money, Time Series Analysis and Computational Finance |
| finch | Parse Darwin Core Files |
| FinCovRegularization | Covariance Matrix Estimation and Regularization for Finance |
| FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |
| FindIt | Finding Heterogeneous Treatment Effects |
| findpython | Functions to Find an Acceptable Python Binary |
| findR | Find Code Snippets, R Scripts, R Markdown, PDF and Text Files with Pattern Matching |
| findviews | A View Generator for Multidimensional Data |
| FinePop | Fine-Scale Population Analysis |
| fingerprint | Functions to Operate on Binary Fingerprint Data |
| fingerPro | Sediment Source Fingerprinting |
| fingertipscharts | Produce Charts that you See on the Fingertips Website |
| fingertipsR | Fingertips Data for Public Health |
| finiteruinprob | Computation of the Probability of Ruin Within a Finite Time Horizon |
| finreportr | Financial Data from U.S. Securities and Exchange Commission |
| fishdata | A Small Collection of Fish Population Datasets |
| FisherEM | The FisherEM Algorithm to Simultaneously Cluster and Visualize High-Dimensional Data |
| fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |
| FisHiCal | Iterative FISH-based Calibration of Hi-C Data |
| fishkirkko2015 | Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland |
| fishmethods | Fishery Science Methods and Models in R |
| fishMod | Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models |
| fishmove | Prediction of Fish Movement Parameters |
| FishResp | Analytical Tool for Aquatic Respirometry |
| FIT | Transcriptomic Dynamics Models in Field Conditions |
| fit.models | Compare Fitted Models |
| fit4NM | NONMEM platform |
| FitAR | Subset AR Model Fitting |
| FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |
| fitbitScraper | Scrapes Data from Fitbit |
| fitdc | Garmin FIT File Decoder |
| fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |
| fitDRC | Fitting Density Ratio Classes |
| fitODBOD | Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD |
| fitplc | Fit Hydraulic Vulnerability Curves |
| fitPoly | Genotype Calling for Bi-Allelic Marker Assays |
| FITSio | FITS (Flexible Image Transport System) Utilities |
| fitteR | Fit Hundreds of Theoretical Distributions to Empirical Data |
| fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |
| fitur | Fit Univariate Distributions |
| fivethirtyeight | Data and Code Behind the Stories and Interactives at 'FiveThirtyEight' |
| FixedPoint | Algorithms for Finding Fixed Point Vectors of Functions |
| fixedTimeEvents | The Distribution of Distances Between Discrete Events in Fixed Time |
| fixerapi | An R Client for the "Fixer.io" Currency API |
| FixSeqMTP | Fixed Sequence Multiple Testing Procedures |
| fizzbuzzR | Fizz Buzz Implementation |
| FKF | Fast Kalman Filter |
| flacco | Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems |
| flam | Fits Piecewise Constant Models with Data-Adaptive Knots |
| flan | FLuctuation ANalysis on Mutation Models |
| flare | Family of Lasso Regression |
| flars | Functional LARS |
| flashClust | Implementation of optimal hierarchical clustering |
| flatr | Transforms Contingency Tables to Data Frames, and Analyses Them |
| flatxml | Tools for Working with XML Files as R Dataframes |
| flexclust | Flexible Cluster Algorithms |
| flexCWM | Flexible Cluster-Weighted Modeling |
| flexdashboard | R Markdown Format for Flexible Dashboards |
| FlexDir | Tools to Work with the Flexible Dirichlet Distribution |
| FlexGAM | Generalized Additive Models with Flexible Response Functions |
| flexmet | Flexible Latent Trait Metrics using the Filtered Monotonic Polynomial Item Response Model |
| flexmix | Flexible Mixture Modeling |
| FlexParamCurve | Tools to Fit Flexible Parametric Curves |
| flexPM | Flexible Parametric Models for Censored and Truncated Data |
| flexrsurv | Flexible Relative Survival Analysis |
| flexsurv | Flexible Parametric Survival and Multi-State Models |
| flexsurvcure | Flexible Parametric Cure Models |
| flextable | Functions for Tabular Reporting |
| flifo | Don't Get Stuck with Stacks in R |
| FLightR | A Package for Reconstructing Animal Paths from Solar Geolocation Loggers |
| flip | Multivariate Permutation Tests |
| flippant | Dithionite Scramblase Assay Analysis |
| flipscores | Robust Testing in GLMs |
| FLLat | Fused Lasso Latent Feature Model |
| float | 32-Bit Floats |
| flock | Process Synchronization Using File Locks |
| flood | Statistical Methods for the (Regional) Analysis of Flood Frequency |
| FloodMapper | Cross-Scale Flooding Prediction under Heavy Precipitation |
| flora | Tools for Interacting with the Brazilian Flora 2020 |
| flowDiv | Cytometric Diversity Indices from Gated Data |
| flower | Tools for characterizing flowering traits |
| flowfield | Forecasts future values of a univariate time series |
| flowr | Streamlining Design and Deployment of Complex Workflows |
| FlowRegEnvCost | The Environmental Costs of Flow Regulation |
| flows | Flow Selection and Analysis |
| FlowScreen | Daily Streamflow Trend and Change Point Screening |
| FLR | Fuzzy Logic Rule Classifier |
| flsa | Path algorithm for the general Fused Lasso Signal Approximator |
| FLSSS | Mining Rigs for Specialized Subset Sum, Multi-Subset Sum, Multidimensional Subset Sum, Multidimensional Knapsack, Generalized Assignment Problems |
| fluoSurv | Estimate Insect Survival from Fluorescence Data |
| Flury | Data Sets from Flury, 1997 |
| flux | Flux rate calculation from dynamic closed chamber measurements |
| fluxweb | Estimate Energy Fluxes in Food Webs |
| fma | Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998) |
| fmbasics | Financial Market Building Blocks |
| FMC | Factorial Experiments with Minimum Level Changes |
| fmdates | Financial Market Date Calculations |
| FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis |
| fmlogcondens | Fast Multivariate Log-Concave Density Estimation |
| FMP | Filtered Monotonic Polynomial IRT Models |
| fmri | Analysis of fMRI Experiments |
| fmriqa | Functional MRI Quality Assurance Routines |
| fmrs | Variable Selection in Finite Mixture of AFT Regression and FMR |
| fmsb | Functions for Medical Statistics Book with some Demographic Data |
| FMsmsnReg | Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors |
| FMStable | Finite Moment Stable Distributions |
| fmt | Variance estimation of FMT method (Fully Moderated t-statistic) |
| fMultivar | Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions |
| FNN | Fast Nearest Neighbor Search Algorithms and Applications |
| fNonlinear | Rmetrics - Nonlinear and Chaotic Time Series Modelling |
| foba | greedy variable selection |
| focusedMDS | Focused, Interactive Multidimensional Scaling |
| foghorn | Summarize CRAN Check Results in the Terminal |
| fontBitstreamVera | Fonts with 'Bitstream Vera Fonts' License |
| fontcm | Computer Modern font for use with extrafont package |
| fontHind | Additional 'ggplot2' Themes Using 'Hind' Fonts |
| fontLiberation | Liberation Fonts |
| fontMPlus | Additional 'ggplot2' Themes Using 'M+' Fonts |
| fontquiver | Set of Installed Fonts |
| foodweb | visualisation and analysis of food web networks |
| foolbox | Function manipulation toolbox |
| fOptions | Rmetrics - Pricing and Evaluating Basic Options |
| forams | Foraminifera and Community Ecology Analyses |
| forcats | Tools for Working with Categorical Variables (Factors) |
| foreach | Provides Foreach Looping Construct for R |
| ForeCA | Forecastable Component Analysis |
| forecast | Forecasting Functions for Time Series and Linear Models |
| ForecastComb | Forecast Combination Methods |
| ForecastCombinations | Forecast Combinations |
| ForecastFramework | A Basis for Modular Model Creation |
| forecastHybrid | Convenient Functions for Ensemble Time Series Forecasts |
| forecastSNSTS | Forecasting for Stationary and Non-Stationary Time Series |
| forecTheta | Forecasting Time Series by Theta Models |
| foreign | Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ... |
| forensic | Statistical Methods in Forensic Genetics |
| forensim | Statistical tools for the interpretation of forensic DNA mixtures |
| foreSIGHT | Systems Insights from Generation of Hydroclimatic Timeseries |
| forestControl | Approximate False Positive Rate Control in Selection Frequency for Random Forest |
| forestFloor | Visualizes Random Forests with Feature Contributions |
| forestinventory | Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories |
| forestmodel | Forest Plots from Regression Models |
| forestplot | Advanced Forest Plot Using 'grid' Graphics |
| forestr | Ecosystem and Canopy Structural Complexity Metrics from LiDAR |
| ForestTools | Analyzing Remotely Sensed Forest Data |
| forge | Casting Values into Shape |
| ForImp | Imputation of Missing Values Through a Forward Imputation Algorithm |
| ForIT | Functions from the 2nd Italian Forest Inventory (INFC) |
| FormalSeries | Elementary arithemtic in formal series rings |
| formatR | Format R Code Automatically |
| formattable | Create 'Formattable' Data Structures |
| Formula | Extended Model Formulas |
| formula.tools | Programmatic Utilities for Manipulating Formulas, Expressions, Calls, Assignments and Other R Objects |
| formulize | Add Formula Interfaces to Modelling Functions |
| fortunes | R Fortunes |
| forward | Robust Analysis using Forward Search |
| forwards | Data from Surveys Conducted by Forwards |
| ForwardSearch | Forward Search using asymptotic theory |
| fossil | Palaeoecological and Palaeogeographical Analysis Tools |
| FossilSim | Simulation of Fossil and Taxonomy Data |
| FourgameteP | FourGamete Test |
| fourierin | Computes Numeric Fourier Integrals |
| fourPNO | Bayesian 4 Parameter Item Response Model |
| FourScores | A Game for Human vs. Human or Human vs. AI |
| fpa | Spatio-Temporal Fixation Pattern Analysis |
| fpc | Flexible Procedures for Clustering |
| fpca | Restricted MLE for Functional Principal Components Analysis |
| FPCA2D | Two Dimensional Functional Principal Component Analysis |
| FPCA3D | Three Dimensional Functional Component Analysis |
| fpCompare | Reliable Comparison of Floating Point Numbers |
| FPDclustering | PD-Clustering and Factor PD-Clustering |
| fpeek | Check Text Files Content at a Glance |
| fpest | Estimating Finite Population Total |
| fpmoutliers | Frequent Pattern Mining Outliers |
| fPortfolio | Rmetrics - Portfolio Selection and Optimization |
| fpow | Computing the noncentrality parameter of the noncentral F distribution |
| fpp | Data for "Forecasting: principles and practice" |
| fpp2 | Data for "Forecasting: Principles and Practice" (2nd Edition) |
| fptdApprox | Approximation of First-Passage-Time Densities for Diffusion Processes |
| FPV | Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment |
| fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |
| fracprolif | Fraction Proliferation via a Quiescent Growth Model |
| fractal | A Fractal Time Series Modeling and Analysis Package |
| fractaldim | Estimation of fractal dimensions |
| FractalParameterEstimation | Simulation and Parameter Estimation of Randomized Sierpinski Carpets using the p-p-p-q-Model |
| fractalrock | Generate fractal time series with non-normal returns distribution |
| FRACTION | Numeric number into fraction |
| fractional | Vulgar Fractions in R |
| fragilityindex | Fragility Index |
| Fragman | Fragment Analysis in R |
| frailtyEM | Fitting Frailty Models with the EM Algorithm |
| frailtyHL | Frailty Models via Hierarchical Likelihood |
| frailtypack | General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction |
| frailtySurv | General Semiparametric Shared Frailty Model |
| frair | Tools for Functional Response Analysis |
| frambgrowth | Simulation of the Growth of Framboidal and Sunflower Pyrite |
| Frames2 | Estimation in Dual Frame Surveys |
| franc | Detect the Language of Text |
| FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |
| frbs | Fuzzy Rule-Based Systems for Classification and Regression Tasks |
| FRCC | Fast Regularized Canonical Correlation Analysis |
| fredr | An R Client for the 'FRED' API |
| freegroup | The Free Group |
| freeknotsplines | Algorithms for Implementing Free-Knot Splines |
| FreeSortR | Free Sorting Data Analysis |
| freestats | Statistical algorithms used in common data mining course |
| freesurfer | Wrapper Functions for 'Freesurfer' |
| freetypeharfbuzz | Deterministic Computation of Text Box Metrics |
| FREGAT | Family REGional Association Tests |
| fRegression | Rmetrics - Regression Based Decision and Prediction |
| FRegSigCom | Functional Regression using Signal Compression Approach |
| FREQ | FREQ: Estimate population size from capture frequencies |
| freqdist | Frequency Distribution |
| freqdom | Frequency Domain Based Analysis: Dynamic PCA |
| freqdom.fda | Functional Time Series: Dynamic Functional Principal Components |
| freqparcoord | Novel Methods for Parallel Coordinates |
| FreqProf | Frequency Profiles Computing and Plotting |
| frequencies | Create Frequency Tables with Counts and Rates |
| frequencyConnectedness | Spectral Decomposition of Connectedness Measures |
| freqweights | Working with Frequency Tables |
| FRESA.CAD | Feature Selection Algorithms for Computer Aided Diagnosis |
| FrF2 | Fractional Factorial Designs with 2-Level Factors |
| FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |
| frite | Functions Writing Functions |
| FRK | Fixed Rank Kriging |
| frm | Regression Analysis of Fractional Responses |
| frmhet | Regression Analysis of Fractional Responses Under Unobserved Heterogeneity |
| frmpd | Regression Analysis of Panel Fractional Responses |
| frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |
| fromo | Fast Robust Moments |
| frontier | Stochastic Frontier Analysis |
| frontiles | Partial Frontier Efficiency Analysis |
| frt | Full Randomization Test |
| fs | Cross-Platform File System Operations Based on 'libuv' |
| FSA | Simple Fisheries Stock Assessment Methods |
| FSAdata | Data to Support Fish Stock Assessment ('FSA') Package |
| fscaret | Automated Feature Selection from 'caret' |
| fsdaR | Robust Data Analysis Through Monitoring and Dynamic Visualization |
| FSelector | Selecting Attributes |
| FSelectorRcpp | 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support |
| fsia | Import and Analysis of OMR Data from FormScanner |
| FSInteract | Fast Searches for Interactions |
| fslr | Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB') |
| fso | Fuzzy Set Ordination |
| fSRM | Social Relations Analyses with Roles ("Family SRM") |
| fst | Lightning Fast Serialization of Data Frames for R |
| fsthet | Fst-Heterozygosity Smoothed Quantiles |
| FSTpackage | Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotation Scores |
| ftDK | A Wrapper for the API of the Danish Parliament |
| FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |
| ftnonpar | Features and Strings for Nonparametric Regression |
| fTrading | Rmetrics - Trading and Rebalancing Financial Instruments |
| FTRLProximal | FTRL Proximal Implementation for Elastic Net Regression |
| fts | R Interface to 'tslib' (a Time Series Library in C++) |
| ftsa | Functional Time Series Analysis |
| ftsspec | Spectral Density Estimation and Comparison for Functional Time Series |
| fueleconomy | EPA fuel economy data |
| fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic |
| fullfact | Full Factorial Breeding Analysis |
| fulltext | Full Text of 'Scholarly' Articles Across Many Data Sources |
| fun | Use R for Fun |
| funbarRF | Fungal Species Identification using DNA Barcode with Random Forest |
| funchir | Convenience Functions by Michael Chirico |
| FunChisq | Chi-Square and Exact Tests for Model-Free Functional Dependency |
| FunCluster | Functional Profiling of Microarray Expression Data |
| Funclustering | A package for functional data clustering |
| FuncMap | Hive Plots of R Package Function Calls |
| functional | Curry, Compose, and other higher-order functions |
| FunctionalNetworks | An algorithm for gene and gene set network inference |
| functools | Functional Programming in R |
| funcy | Functional Clustering Algorithms |
| funData | An S4 Class for Functional Data |
| funFEM | Clustering in the Discriminative Functional Subspace |
| funHDDC | Univariate and Multivariate Model-Based Clustering in Group-Specific Functional Subspaces |
| funique | A Faster Unique Function |
| fUnitRoots | Rmetrics - Modelling Trends and Unit Roots |
| funLBM | Model-Based Co-Clustering of Functional Data |
| FUNLDA | Genomic Latent Dirichlet Allocation |
| funModeling | Exploratory Data Analysis and Data Preparation Tool-Box Book |
| funnelR | Funnel Plots for Proportion Data |
| funr | Simple Utility Providing Terminal Access to all R Functions |
| funrar | Functional Rarity Indices Computation |
| funreg | Functional Regression for Irregularly Timed Data |
| FUNTA | Functional Tangential Angle Pseudo-Depth |
| funtimes | Functions for Time Series Analysis |
| furniture | Tables for Quantitative Scientists |
| furrr | Apply Mapping Functions in Parallel using Futures |
| fuser | Fused Lasso for High-Dimensional Regression over Groups |
| fusionclust | Clustering and Feature Screening using L1 Fusion Penalty |
| FusionLearn | Fusion Learning |
| futile.any | A Tiny Utility Providing Polymorphic Operations |
| futile.logger | A Logging Utility for R |
| futile.matrix | Random Matrix Generation and Manipulation |
| futile.options | Futile Options Management |
| futile.paradigm | A framework for working in a functional programming paradigm in R |
| futility | Interim Analysis of Operational Futility in Randomized Trials with Time-to-Event Endpoints and Fixed Follow-Up |
| future | Unified Parallel and Distributed Processing in R for Everyone |
| future.apply | Apply Function to Elements in Parallel using Futures |
| future.BatchJobs | A Future API for Parallel and Distributed Processing using BatchJobs |
| future.batchtools | A Future API for Parallel and Distributed Processing using 'batchtools' |
| future.callr | A Future API for Parallel Processing using 'callr' |
| futureheatwaves | Find, Characterize, and Explore Extreme Events in Climate Projections |
| fuzzr | Fuzz-Test R Functions |
| Fuzzy.p.value | Computing Fuzzy p-Value |
| FuzzyAHP | (Fuzzy) AHP Calculation |
| fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |
| fuzzyforest | Fuzzy Forests |
| fuzzyjoin | Join Tables Together on Inexact Matching |
| FuzzyLP | Fuzzy Linear Programming |
| FuzzyMCDM | Multi-Criteria Decision Making Methods for Fuzzy Data |
| FuzzyNumbers | Tools to Deal with Fuzzy Numbers |
| FuzzyNumbers.Ext.2 | Apply Two Fuzzy Numbers on a Monotone Function |
| FuzzyR | Fuzzy Logic Toolkit for R |
| fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |
| fuzzyreg | Fuzzy Linear Regression |
| FuzzyStatProb | Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain |
| FuzzyStatTra | Statistical Methods for Trapezoidal Fuzzy Numbers |
| FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |
| fuzzywuzzyR | Fuzzy String Matching |
| fwdmsa | Forward search for Mokken scale analysis |
| FWDselect | Selecting Variables in Regression Models |
| fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |
| fwsim | Fisher-Wright Population Simulation |
| fxregime | Exchange Rate Regime Analysis |
| g.data | Delayed-Data Packages |
| G1DBN | A package performing Dynamic Bayesian Network inference |
| g2f | Find and Fill Gaps in Metabolic Networks |
| G2Sd | Grain-Size Statistics and Description of Sediment |
| g3viz | Visualize Genomic Mutation Data Using an Interactive Lollipop Diagram |
| GA | Genetic Algorithms |
| GAabbreviate | Abbreviating Items Measures using Genetic Algorithms |
| GABi | Framework for Generalized Subspace Pattern Mining |
| GAD | GAD: Analysis of variance from general principles |
| GADAG | A Genetic Algorithm for Learning Directed Acyclic Graphs |
| GaDiFPT | First Passage Time Simulation for Gaussian Diffusion Processes |
| GADMTools | Easy Use of 'GADM' Shapefiles |
| gafit | Genetic Algorithm for Curve Fitting |
| gaiah | Genetic and Isotopic Assignment Accounting for Habitat Suitability |
| gains | Lift (Gains) Tables and Charts |
| GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |
| galgo | Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data |
| galts | Genetic Algorithms and C-Steps Based LTS (Least Trimmed Squares) Estimation |
| gam | Generalized Additive Models |
| gamair | Data for "GAMs: An Introduction with R" |
| gambin | Fit the Gambin Model to Species Abundance Distributions |
| GAMBoost | Generalized linear and additive models by likelihood based boosting |
| gamboostLSS | Boosting Methods for 'GAMLSS' |
| gamboostMSM | Estimating multistate models using gamboost() |
| gamclass | Functions and Data for a Course on Modern Regression and Classification |
| gamCopula | Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas |
| GAMens | Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification |
| games | Statistical Estimation of Game-Theoretic Models |
| gamesGA | Genetic Algorithm for Sequential Symmetric Games |
| GameTheory | Cooperative Game Theory |
| GameTheoryAllocation | Tools for Calculating Allocations in Game Theory |
| gamlr | Gamma Lasso Regression |
| gamlss | Generalised Additive Models for Location Scale and Shape |
| gamlss.add | Extra Additive Terms for GAMLSS Models |
| gamlss.cens | Fitting an Interval Response Variable Using ‘gamlss.family’ Distributions |
| gamlss.data | GAMLSS Data |
| gamlss.demo | Demos for GAMLSS |
| gamlss.dist | Distributions for Generalized Additive Models for Location Scale and Shape |
| gamlss.mx | Fitting Mixture Distributions with GAMLSS |
| gamlss.nl | Fitting non linear parametric GAMLSS models |
| gamlss.spatial | Spatial Terms in Generalized Additive Models for Location Scale and Shape Models |
| gamlss.tr | Generating and Fitting Truncated ‘gamlss.family’ Distributions |
| gamlss.util | GAMLSS Utilities |
| gamlssbssn | Bimodal Skew Symmetric Normal Distribution |
| gamm4 | Generalized Additive Mixed Models using 'mgcv' and 'lme4' |
| gamm4.test | Comparing Nonlinear Curves and Surface Estimations by Semiparametric Methods |
| Gammareg | classic gamma regression: joint modeling of mean and shape parameters |
| gammSlice | Generalized Additive Mixed Model Analysis via Slice Sampling |
| gamreg | Robust and Sparse Regression via Gamma-Divergence |
| gamRR | Calculate the RR for the GAM |
| gamsel | Fit Regularization Path for Generalized Additive Models |
| ganalytics | Interact with 'Google Analytics' |
| GANPA | Gene Association Network-based Pathway Analysis |
| GANPAdata | The GANPA Datasets Package |
| gap | Genetic Analysis Package |
| gap.datasets | Datasets for 'gap' |
| GAparsimony | Searching Parsimony Models with Genetic Algorithms |
| gapfill | Fill Missing Values in Satellite Data |
| gapmap | Functions for Drawing Gapped Cluster Heatmap with ggplot2 |
| gapminder | Data from Gapminder |
| GAR | Authorize and Request Google Analytics Data |
| garray | Generalized Array Arithmetic for Ragged Arrays with Named Margins |
| GAS | Generalized Autoregressive Score Models |
| gaselect | Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data |
| gasfluxes | Greenhouse Gas Flux Calculation from Chamber Measurements |
| gastempt | Analyzing Gastric Emptying from MRI or Scintigraphy |
| gaston | Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models |
| gatepoints | Easily Gate or Select Points on a Scatter Plot |
| GauPro | Gaussian Process Fitting |
| gaussDiff | Difference measures for multivariate Gaussian probability density functions |
| gaussfacts | The Greatest Mathematician Since Antiquity |
| gaussquad | Collection of functions for Gaussian quadrature |
| gazepath | Parse Eye-Tracking Data into Fixations |
| gb | Generalize Lambda Distribution and Generalized Bootstrapping |
| GB2 | Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation |
| gbfs | Interface with General Bikeshare Feed Specification Files |
| GBJ | Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies |
| gbm | Generalized Boosted Regression Models |
| gbm2sas | Convert GBM Object Trees to SAS Code |
| gbp | A Bin Packing Problem Solver |
| gbRd | Utilities for processing Rd objects and files |
| gbs2ploidy | Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data |
| gbts | Hyperparameter Search for Gradient Boosted Trees |
| gbutils | Simulation of Real and Complex Numbers and Small Programming Utilities |
| GCAI.bias | Guided Correction Approach for Inherited bias (GCAI.bias) |
| GCalignR | Simple Peak Alignment for Gas-Chromatography Data |
| gCat | Graph-based two-sample tests for categorical data |
| gcbd | 'GPU'/CPU Benchmarking in Debian-Based Systems |
| GCD | Global Charcoal Database |
| gcdnet | LASSO and Elastic Net (Adaptive) Penalized Least Squares, Logistic Regression, HHSVM, Squared Hinge SVM and Expectile Regression using a Fast GCD Algorithm |
| gcerisk | Generalized Competing Event Model |
| gcForest | Deep Forest Model |
| gcite | Google Citation Parser |
| gcKrig | Analysis of Geostatistical Count Data using Gaussian Copulas |
| gclus | Clustering Graphics |
| gcmr | Gaussian Copula Marginal Regression |
| gconcord | Concord method for Graphical Model Selection |
| gcookbook | Data for "R Graphics Cookbook" |
| GCPM | Generalized Credit Portfolio Model |
| GD | Geographical Detectors |
| GDAdata | Datasets for the Book Graphical Data Analysis with R |
| gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |
| gdata | Various R Programming Tools for Data Manipulation |
| GDAtools | A Toolbox for the Analysis of Categorical Data in Social Sciences, and Especially Geometric Data Analysis |
| gDefrag | Graph-Based Landscape De-Fragmentation |
| GDELTtools | Download, slice, and normalize GDELT data |
| gdimap | Generalized Diffusion Magnetic Resonance Imaging |
| GDINA | The Generalized DINA Model Framework |
| gdistance | Distances and Routes on Geographical Grids |
| gdm | Generalized Dissimilarity Modeling |
| gdmp | Genomic Data Management |
| gdns | Tools to Work with Google's 'DNS-over-HTTPS' ('DoH') 'API' |
| gdpc | Generalized Dynamic Principal Components |
| gds | Descriptive Statistics of Grouped Data |
| gdtools | Utilities for Graphical Rendering |
| gear | Geostatistical Analysis in R |
| GeDS | Geometrically Designed Spline Regression |
| gee | Generalized Estimation Equation Solver |
| gee4 | Generalised Estimating Equations (GEE/WGEE) using 'Armadillo' and S4 |
| GEEaSPU | Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE) |
| geecure | Marginal Proportional Hazards Mixture Cure Models with Generalized Estimating Equations |
| geeM | Solve Generalized Estimating Equations |
| GEEmediate | Mediation Analysis for Generalized Linear Models Using the Difference Method |
| geepack | Generalized Estimating Equation Package |
| geesmv | Modified Variance Estimators for Generalized Estimating Equations |
| geex | An API for M-Estimation |
| geigen | Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack |
| geiger | Analysis of Evolutionary Diversification |
| GEint | Misspecified Models for Gene-Environment Interaction |
| gelnet | Generalized Elastic Nets |
| gem | File Conversion for 'Gem Infrasound Logger' |
| gemlog | File Conversion for 'Gem Infrasound Logger' |
| gems | Generalized Multistate Simulation Model |
| gemtc | Network Meta-Analysis Using Bayesian Methods |
| genalg | R Based Genetic Algorithm |
| GenAlgo | Classes and Methods to Use Genetic Algorithms for Feature Selection |
| genasis | Global ENvironmental ASsessment Information System (GENASIS) computational tools |
| genBaRcode | Analysis and Visualization Tools for Genetic Barcode Data |
| genBart | Generate 'BART' File |
| GenBinomApps | Clopper-Pearson Confidence Interval and Generalized Binomial Distribution |
| gencve | General Cross Validation Engine |
| gendata | Generate and Modify Synthetic Datasets |
| gender | Predict Gender from Names Using Historical Data |
| genderBR | Predict Gender from Brazilian First Names |
| genderizeR | Gender Prediction Based on First Names |
| gendist | Generated Probability Distribution Models |
| GENEAclassify | Segmentation and Classification of Accelerometer Data |
| GENEAread | Package for Reading Binary Files |
| GeneClusterNet | Gene Expression Clustering and Gene Network |
| GeneCycle | Identification of Periodically Expressed Genes |
| GeneF | Package for Generalized F-statistics |
| geneListPie | Profiling a gene list into GOslim or KEGG function pie |
| genemodel | Gene Model Plotting in R |
| GeneNet | Modeling and Inferring Gene Networks |
| geneNetBP | Belief Propagation in Genotype-Phenotype Networks |
| genepi | Genetic Epidemiology Design and Inference |
| genepop | Population Genetic Data Analysis Using Genepop |
| generalCorr | Generalized Correlations and Initial Causal Path |
| generalhoslem | Goodness of Fit Tests for Logistic Regression Models |
| GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |
| GeneralizedUmatrix | Credible Visualization for Two-Dimensional Projections of Data |
| GeneralOaxaca | Blinder-Oaxaca Decomposition for Generalized Linear Model |
| generator | Generate Data Containing Fake Personally Identifiable Information |
| GeneReg | Construct time delay gene regulatory network |
| geneSignatureFinder | A Gene-signatures finder tools |
| genesysr | Genesys PGR Client |
| genetics | Population Genetics |
| GeneticSubsetter | Identify Favorable Subsets of Germplasm Collections |
| GeNetIt | Spatial Graph-Theoretic Genetic Gravity Modelling |
| GenForImp | The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data |
| genie | A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm |
| geniusr | Tools for Working with the 'Genius' API |
| GenKern | Functions for generating and manipulating binned kernel density estimates |
| GENLIB | Genealogical Data Analysis |
| genlogis | Generalized Logistic Distribution |
| genMOSS | Functions for the Bayesian Analysis of GWAS Data |
| genMOSSplus | Application of MOSS algorithm to genome-wide association study (GWAS) |
| geno2proteo | Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci |
| genogeographer | Methods for Analysing Forensic Ancestry Informative Markers |
| genomeplot | 'Plot genome wide values for all chromosomes' |
| genomic.autocorr | Models Dealing with Spatial Dependency in Genomic Data |
| GenomicMating | Efficient Breeding by Genomic Mating |
| genomicper | Circular Genomic Permutation using Gwas p-Values of Association |
| GenomicTools | Collection of Tools for Genomic Data Analysis |
| GenomicTools.fileHandler | File Handlers for Genomic Data Analysis |
| genoPlotR | Plot Publication-Grade Gene and Genome Maps |
| GenOrd | Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions |
| genotypeR | SNP Genotype Marker Design and Analysis |
| genpathmox | Generalized Pathmox Approach Segmentation Tree Analysis |
| genridge | Generalized Ridge Trace Plots for Ridge Regression |
| GenSA | Generalized Simulated Annealing |
| gensemble | generalized ensemble methods |
| gensphere | Generalized Spherical Distributions |
| genSurv | Generating Multi-State Survival Data |
| gensvm | A Generalized Multiclass Support Vector Machine |
| GenWin | Spline Based Window Boundaries for Genomic Analyses |
| geoaxe | Split 'Geospatial' Objects into Pieces |
| geoBayes | Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods |
| GeoBoxplot | Geographic Box Plot |
| geoCount | Analysis and Modeling for Geostatistical Count Data |
| GeoDE | A geometrical Approach to Differential expression and gene-set enrichment |
| geodetector | Stratified Heterogeneity Measure, Dominant Driving Force Detection, Interaction Relationship Investigation |
| geodist | Fast, Dependency-Free Geodesic Distance Calculations |
| geoelectrics | 3D-Visualization of Geoelectric Resistivity Measurement Profiles |
| geofacet | 'ggplot2' Faceting Utilities for Geographical Data |
| geofd | Spatial Prediction for Function Value Data |
| geoGAM | Select Sparse Geoadditive Models for Spatial Prediction |
| GeoGenetix | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |
| geogrid | Turn Geospatial Polygons into Regular or Hexagonal Grids |
| geohash | Tools for Geohash Creation and Manipulation |
| geojson | Classes for 'GeoJSON' |
| geojsonio | Convert Data from and to 'GeoJSON' or 'TopoJSON' |
| geojsonlint | Tools for Validating 'GeoJSON' |
| geojsonR | A GeoJson Processing Toolkit |
| geojsonsf | GeoJSON to Simple Feature Converter |
| geoknife | Web-Processing of Large Gridded Datasets |
| GeoLight | Analysis of Light Based Geolocator Data |
| GEOmap | Topographic and Geologic Mapping |
| geomapdata | Data for topographic and Geologic Mapping |
| GeomComb | (Geometric) Forecast Combination Methods |
| geomedb | Fetch 'GeOMe-db' FIMS Data |
| geomerge | Geospatial Data Integration |
| geometa | Tools for Reading and Writing ISO/OGC Geographic Metadata |
| geometry | Mesh Generation and Surface Tesselation |
| geomnet | Network Visualization in the 'ggplot2' Framework |
| GeoMongo | Geospatial Queries Using 'PyMongo' |
| geomorph | Geometric Morphometric Analyses of 2D/3D Landmark Data |
| geonames | Interface to www.geonames.org web service |
| geonapi | 'GeoNetwork' API R Interface |
| geoops | 'GeoJSON' Topology Calculations and Operations |
| geoparser | Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text |
| geophys | Geophysics, Continuum Mechanics, Gravity Modeling |
| geoR | Analysis of Geostatistical Data |
| GeoRange | Calculating Geographic Range from Occurrence Data |
| geoRglm | A Package for Generalised Linear Spatial Models |
| georob | Robust Geostatistical Analysis of Spatial Data |
| geosapi | GeoServer REST API R Interface |
| geoscale | Geological Time Scale Plotting |
| geospacom | Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps |
| geoSpectral | Classes and Methods for Working with Spectral Data with Space-Time Attributes |
| geosphere | Spherical Trigonometry |
| geospt | Geostatistical Analysis and Design of Optimal Spatial Sampling Networks |
| geosptdb | Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression |
| geostatsp | Geostatistical Modelling with Likelihood and Bayes |
| geotech | Geotechnical Engineering |
| geotools | Geo tools |
| geotoolsR | Tools to Improve the Use of Geostatistic |
| geotopbricks | An R Plug-in for the Distributed Hydrological Model GEOtop |
| geozoning | Zoning Methods for Spatial Data |
| geozoo | Zoo of Geometric Objects |
| gepaf | Google Encoded Polyline Algorithm Format |
| GERGM | Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models |
| GerminaR | Germination Indexes for Seed Germination Variables for Ecophysiological Studies |
| germinationmetrics | Seed Germination Indices and Curve Fitting |
| gesca | Generalized Structured Component Analysis (GSCA) |
| GESE | Gene-Based Segregation Test |
| gesis | R Client for GESIS Data Catalogue (DBK) |
| gestalt | Tools for Making and Combining Functions |
| GESTr | Gene Expression State Transformation |
| getCRUCLdata | Use and Explore CRU CL v. 2.0 Climatology Elements in R |
| GetDFPData | Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA System |
| GetHFData | Download and Aggregate High Frequency Trading Data from Bovespa |
| GetITRData | Reading Financial Reports from Bovespa's ITR System |
| getlandsat | Get Landsat 8 Data from Amazon Public Data Sets |
| GetLattesData | Reading Bibliometric Data from Lattes Platform |
| getMet | Get Meteorological Data for Hydrologic Models |
| getmstatistic | Quantifying Systematic Heterogeneity in Meta-Analysis |
| getopt | C-Like 'getopt' Behavior |
| GetoptLong | Parsing Command-Line Arguments and Variable Interpolation |
| getPass | Masked User Input |
| getProxy | Get Free Proxy IP and Port |
| GetR | GetR: Calculate Guttman error trees in R |
| gets | General-to-Specific (GETS) Modelling and Indicator Saturation Methods |
| getTBinR | Get WHO Tuberculosis Data |
| GetTDData | Get Data for Brazilian Bonds (Tesouro Direto) |
| gettz | Get the Timezone Information |
| GEVcdn | GEV Conditional Density Estimation Network |
| GEVStableGarch | ARMA-GARCH/APARCH Models with GEV and Stable Distributions |
| GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data |
| GFA | Group Factor Analysis |
| gfcanalysis | Tools for Working with Hansen et al. Global Forest Change Dataset |
| GFD | Tests for General Factorial Designs |
| GFE | Gross Flows Estimation under Complex Surveys |
| gfer | Green Finance and Environmental Risk |
| GFGM.copula | Generalized Farlie-Gumbel-Morgenstern Copula |
| gfmR | Implements Group Fused Multinomial Regression |
| GFORCE | Clustering and Inference Procedures for High-Dimensional Latent Variable Models |
| ggallin | Grab Bag of 'ggplot2' Functions |
| ggalluvial | Alluvial Diagrams in 'ggplot2' |
| GGally | Extension to 'ggplot2' |
| ggalt | Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2' |
| ggbeeswarm | Categorical Scatter (Violin Point) Plots |
| ggbuildr | Save Incremental Builds of Plots |
| ggChernoff | Chernoff Faces for 'ggplot2' |
| ggconf | Simpler Appearance Modification of 'ggplot2' |
| ggcorrplot | Visualization of a Correlation Matrix using 'ggplot2' |
| ggdag | Analyze and Create Elegant Directed Acyclic Graphs |
| ggdendro | Create Dendrograms and Tree Diagrams Using 'ggplot2' |
| ggdistribute | A 'ggplot2' Extension for Plotting Unimodal Distributions |
| ggdmc | Cognitive Models |
| gge | Genotype Plus Genotype-by-Environment Biplots |
| GGEBiplotGUI | Interactive GGE Biplots in R |
| GGEBiplots | GGE Biplots with 'ggplot2' |
| ggedit | Interactive 'ggplot2' Layer and Theme Aesthetic Editor |
| ggeffects | Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs |
| ggenealogy | Visualization Tools for Genealogical Data |
| ggetho | Visualisation of High-Throughput Behavioural (i.e. Ethomics) Data |
| ggExtra | Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements |
| ggfan | Summarise a Distribution Through Coloured Intervals |
| ggfittext | Fit Text Inside a Box in 'ggplot2' |
| ggfocus | Focus on Specific Factor Levels in your ggplot() |
| ggforce | Accelerating 'ggplot2' |
| ggformula | Formula Interface to the Grammar of Graphics |
| ggfortify | Data Visualization Tools for Statistical Analysis Results |
| gggenes | Draw Gene Arrow Maps in 'ggplot2' |
| ggghost | Capture the Spirit of Your 'ggplot2' Calls |
| ggguitar | Utilities for Creating Guitar Tablature |
| gghalfnorm | Create a Half Normal Plot Using 'ggplot2' |
| gghighlight | Highlight Lines and Points in 'ggplot2' |
| ggimage | Use Image in 'ggplot2' |
| gginnards | Explore the Innards of 'ggplot2' Objects |
| GGIR | Raw Accelerometer Data Analysis |
| ggiraph | Make 'ggplot2' Graphics Interactive |
| ggiraphExtra | Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' |
| ggjoy | Joyplots in 'ggplot2' |
| gglasso | Group Lasso Penalized Learning Using a Unified BMD Algorithm |
| gglogo | Geom for Logo Sequence Plots |
| ggloop | Create 'ggplot2' Plots in a Loop |
| gglorenz | Plotting Lorenz Curve with the Blessing of 'ggplot2' |
| ggm | Functions for graphical Markov models |
| ggmap | Spatial Visualization with ggplot2 |
| ggmcmc | Tools for Analyzing MCMC Simulations from Bayesian Inference |
| GGMM | Mixture Gaussian Graphical Models |
| ggmosaic | Mosaic Plots in the 'ggplot2' Framework |
| GGMridge | Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation |
| GGMselect | Gaussian Graphs Models Selection |
| ggmuller | Create Muller Plots of Evolutionary Dynamics |
| ggnetwork | Geometries to Plot Networks with 'ggplot2' |
| ggpage | Creates Page Layout Visualizations |
| ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |
| ggparliament | Parliament Plots |
| ggperiodic | Easy Plotting of Periodic Data with 'ggplot2' |
| ggplot2 | Create Elegant Data Visualisations Using the Grammar of Graphics |
| ggplot2movies | Movies Data |
| ggplotAssist | 'RStudio' Addin for Teaching and Learning 'ggplot2' |
| ggplotgui | Create Ggplots via a Graphical User Interface |
| ggplotify | Convert Plot to 'grob' or 'ggplot' Object |
| ggpmisc | Miscellaneous Extensions to 'ggplot2' |
| ggpol | Visualizing Social Science Data with 'ggplot2' |
| ggpolypath | Polygons with Holes for the Grammar of Graphics |
| ggpubr | 'ggplot2' Based Publication Ready Plots |
| ggpval | Annotate Statistical Tests for 'ggplot2' |
| ggQC | Quality Control Charts for 'ggplot' |
| ggQQunif | Compare Big Datasets to the Uniform Distribution |
| ggquickeda | Quickly Explore Your Data Using 'ggplot2' and Summary Tables |
| ggquiver | Quiver Plots for 'ggplot2' |
| ggRandomForests | Visually Exploring Random Forests |
| ggraph | An Implementation of Grammar of Graphics for Graphs and Networks |
| ggraptR | Allows Interactive Visualization of Data Through a Web Browser GUI |
| ggrasp | Gaussian-Based Genome Representative Selector with Prioritization |
| ggrepel | Automatically Position Non-Overlapping Text Labels with 'ggplot2' |
| ggridges | Ridgeline Plots in 'ggplot2' |
| ggROC | package for roc curve plot with ggplot2 |
| ggsci | Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2' |
| ggseas | 'stats' for Seasonal Adjustment on the Fly with 'ggplot2' |
| ggseqlogo | A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos |
| ggsignif | Significance Brackets for 'ggplot2' |
| ggsn | North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap' |
| ggsom | New Data Visualisations for SOMs Cluster |
| ggspatial | Spatial Data Framework for ggplot2 |
| ggspectra | Extensions to 'ggplot2' for Radiation Spectra |
| ggstance | Horizontal 'ggplot2' Components |
| ggstatsplot | 'ggplot2' Based Plots with Statistical Details |
| ggswissmaps | Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects |
| ggtern | An Extension to 'ggplot2', for the Creation of Ternary Diagrams |
| ggThemeAssist | Add-in to Customize 'ggplot2' Themes |
| ggthemes | Extra Themes, Scales and Geoms for 'ggplot2' |
| ggTimeSeries | Time Series Visualisations Using the Grammar of Graphics |
| GGUM | Generalized Graded Unfolding Model |
| ggversa | Graficas Versatiles Con 'ggplot2' |
| ggvis | Interactive Grammar of Graphics |
| ggvoronoi | Voronoi Diagrams and Heatmaps with 'ggplot2' |
| ggwordcloud | A Wordcloud Geom for 'ggplot2' |
| gh | 'GitHub' 'API' |
| GHap | Genome-Wide Haplotyping |
| ghibli | Studio Ghibli Palette Generator |
| GHQp | Gauss Hermite Quadrature with pruning |
| ghyp | A Package on Generalized Hyperbolic Distribution and Its Special Cases |
| gibble | Geometry Decomposition |
| gibbs.met | Naive Gibbs Sampling with Metropolis Steps |
| GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |
| Gifi | Multivariate Analysis with Optimal Scaling |
| gifski | Highest Quality GIF Encoder |
| gifti | Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information |
| GIGrvg | Random Variate Generator for the GIG Distribution |
| GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |
| gim | Generalized Integration Model |
| gimme | Group Iterative Multiple Model Estimation |
| gimmeTools | Supplemental Tools for the 'gimme' R Package |
| gimms | Download and Process GIMMS NDVI3g Data |
| GiNA | High Throughput Phenotyping |
| GiniWegNeg | Computing the Gini-Based Coefficients for Weighted and Negative Attributes |
| gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |
| giphyr | R Interface to the Giphy API |
| GiRaF | Gibbs Random Fields Analysis |
| GISTools | Some further GIS capabilities for R |
| gistr | Work with 'GitHub' 'Gists' |
| git2r | Provides Access to Git Repositories |
| gitgadget | Rstudio Addin for Version Control and Assignment Management using Git |
| githubinstall | A Helpful Way to Install R Packages Hosted on GitHub |
| gitlabr | Access to the Gitlab API |
| gitter | Quantification of Pinned Microbial Cultures |
| givitiR | The GiViTI Calibration Test and Belt |
| Giza | Constructing panels of population pyramid plots based on lattice |
| gjam | Generalized Joint Attribute Modeling |
| GJRM | Generalised Joint Regression Modelling |
| gk | g-and-k and g-and-h Distribution Functions |
| GK2011 | Gaines and Kuklinski (2011) Estimators for Hybrid Experiments |
| gkmSVM | Gapped-Kmer Support Vector Machine |
| glacierSMBM | Glacier Surface Mass Balance Model |
| glamlasso | Penalization in Large Scale Generalized Linear Array Models |
| glarma | Generalized Linear Autoregressive Moving Average Models |
| glassdoor | Interface to 'Glassdoor' API |
| glasso | Graphical Lasso: Estimation of Gaussian Graphical Models |
| glassoFast | Fast Graphical LASSO |
| glba | General Linear Ballistic Accumulator Models |
| glcm | Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs) |
| gld | Estimation and Use of the Generalised (Tukey) Lambda Distribution |
| GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |
| GLDreg | Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data |
| gldrm | Generalized Linear Density Ratio Models |
| GLIDE | Global and Individual Tests for Direct Effects |
| glinternet | Learning Interactions via Hierarchical Group-Lasso Regularization |
| gllm | Generalised log-linear model |
| gllvm | Generalized Linear Latent Variable Models |
| glm.deploy | 'C' and 'Java' Source Code Generator for Fitted Glm Objects |
| glm.predict | Predicted Values and Discrete Changes for GLM |
| glm2 | Fitting Generalized Linear Models |
| GLMaSPU | An Adaptive Test on High Dimensional Parameters in Generalized Linear Models |
| glmbb | All Hierarchical or Graphical Models for Generalized Linear Model |
| glmBfp | Bayesian Fractional Polynomials for GLMs |
| glmc | Fitting Generalized Linear Models Subject to Constraints |
| glmdm | R Code for Simulation of GLMDM |
| glmertree | Generalized Linear Mixed Model Trees |
| glmgraph | Graph-Constrained Regularization for Sparse Generalized Linear Models |
| glmlep | Fit GLM with LEP-based penalized maximum likelihood |
| glmm | Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation |
| GLMMadaptive | Generalized Linear Mixed Models using Adaptive Gaussian Quadrature |
| glmmboot | Bootstrap Resampling for Mixed Effects and Plain Models |
| glmmBUGS | Generalised Linear Mixed Models with BUGS and JAGS |
| glmmEP | Generalized Linear Mixed Model Analysis via Expectation Propagation |
| glmmfields | Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling |
| glmmLasso | Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation |
| glmmML | Generalized Linear Models with Clustering |
| GLMMRR | Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data |
| glmmsr | Fit a Generalized Linear Mixed Model |
| glmmTMB | Generalized Linear Mixed Models using Template Model Builder |
| glmnet | Lasso and Elastic-Net Regularized Generalized Linear Models |
| glmnetcr | Fit a Penalized Constrained Continuation Ratio Model for Predicting an Ordinal Response |
| glmnetUtils | Utilities for 'Glmnet' |
| glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |
| glmpathcr | Fit a Penalized Continuation Ratio Model for Predicting an Ordinal Response |
| GLMsData | Generalized Linear Model Data Sets |
| glmtlp | Truncated Lasso Regularized Generalized Linear Models |
| glmulti | Model selection and multimodel inference made easy |
| glmvsd | Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models |
| glmx | Generalized Linear Models Extended |
| globalboosttest | Testing the additional predictive value of high-dimensional data |
| GlobalDeviance | Global Deviance Permutation Tests |
| GlobalFit | Bi-Level Optimization of Metabolic Network Models |
| globalGSA | Global Gene-Set Analysis for Association Studies |
| GlobalOptions | Generate Functions to Get or Set Global Options |
| globalOptTests | Objective functions for benchmarking the performance of global optimization algorithms |
| globals | Identify Global Objects in R Expressions |
| globe | Plot 2D and 3D Views of the Earth, Including Major Coastline |
| glogis | Fitting and Testing Generalized Logistic Distributions |
| glpkAPI | R Interface to C API of GLPK |
| glrt | Generalized Logrank Tests for Interval-censored Failure Time Data |
| gLRTH | Genome-Wide Association and Linkage Analysis under Heterogeneity |
| GLSME | Generalized Least Squares with Measurement Error |
| glue | Interpreted String Literals |
| glycanr | Tools for Analysing N-Glycan Data |
| gma | Granger Mediation Analysis |
| GMAC | Genomic Mediation Analysis with Adaptive Confounding Adjustment |
| gmailr | Access the Gmail RESTful API |
| GmAMisc | Gianmarco Alberti Miscellaneous |
| gmapsdistance | Distance and Travel Time Between Two Points from Google Maps |
| gmat | Simulation of Graphically Constrained Matrices |
| GMCM | Fast Estimation of Gaussian Mixture Copula Models |
| gMCP | Graph Based Multiple Comparison Procedures |
| gmDatabase | Accessing a Geometallurgical Database with R |
| GMDH | Short Term Forecasting via GMDH-Type Neural Network Algorithms |
| GMDH2 | Binary Classification via GMDH-Type Neural Network Algorithms |
| Gmedian | Geometric Median, k-Median Clustering and Robust Median PCA |
| gmediation | Mediation Analysis for Multiple and Multi-Stage Mediators |
| gmeta | Meta-Analysis via a Unified Framework of Confidence Distribution |
| gmfd | Inference and Clustering of Functional Data |
| Gmisc | Descriptive Statistics, Transition Plots, and More |
| gmm | Generalized Method of Moments and Generalized Empirical Likelihood |
| GMMBoost | Likelihood-based Boosting for Generalized mixed models |
| gmnl | Multinomial Logit Models with Random Parameters |
| gmodels | Various R Programming Tools for Model Fitting |
| gMOIP | '2D plots of linear or integer programming models' |
| gmp | Multiple Precision Arithmetic |
| GMSE | Generalised Management Strategy Evaluation Simulator |
| gmt | Interface Between GMT Map-Making Software and R |
| gmvarkit | Estimate Gaussian Mixture Vector Autoregressive Model |
| gMWT | Generalized Mann-Whitney Type Tests |
| GNAR | Methods for Fitting Network Time Series Models |
| GNE | Computation of Generalized Nash Equilibria |
| gnFit | Goodness of Fit Test for Continuous Distribution Functions |
| gnlm | Generalized Nonlinear Regression Models |
| gnm | Generalized Nonlinear Models |
| gnmf | Generalized Non-negative Matrix Factorization Based on Renyi Divergence |
| gnorm | Generalized Normal/Exponential Power Distribution |
| gnumeric | Read Data from Files Readable by 'gnumeric' |
| goalprog | Weighted and lexicographical goal programming and optimization |
| goeveg | Functions for Community Data and Ordinations |
| gof | Model-diagnostics based on cumulative residuals |
| gofastr | Fast DocumentTermMatrix and TermDocumentMatrix Creation |
| gofCopula | Goodness-of-Fit Tests for Copulae |
| GoFKernel | Testing Goodness-of-Fit with the Kernel Density Estimator |
| GofKmt | Khmaladze Martingale Transformation Goodness-of-Fit Test |
| gofMC | Goodness of Fit Noise Analysis Using Monte Carlo Techniques |
| goft | Tests of Fit for some Probability Distributions |
| goftest | Classical Goodness-of-Fit Tests for Univariate Distributions |
| goftte | Goodness-of-Fit for Time-to-Event Data |
| GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |
| gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |
| goldi | Gene Ontology Label Discernment and Identification |
| gomms | GLM-Based Ordination Method |
| GoodmanKruskal | Association Analysis for Categorical Variables |
| goodpractice | Advice on R Package Building |
| googleAnalyticsR | Google Analytics API into R |
| googleAuthR | Authenticate and Create Google APIs |
| googleCloudStorageR | Interface with Google Cloud Storage API |
| googleComputeEngineR | R Interface with Google Compute Engine |
| googledrive | An Interface to Google Drive |
| googleformr | Collect Data Programmatically by POST Methods to Google Forms |
| GoogleKnowledgeGraphR | Retrieve Information from 'Google Knowledge Graph' API |
| googleLanguageR | Call Google's 'Natural Language' API, 'Cloud Translation' API, 'Cloud Speech' API and 'Cloud Text-to-Speech' API |
| googlenlp | An Interface to Google's Cloud Natural Language API |
| googlePolylines | Encoding Coordinates into 'Google' Polylines |
| googlePrintr | Connect to 'Google Cloud Print' API |
| googlePublicData | Working with Google's 'Public Data Explorer' DSPL Metadata Files |
| googlesheets | Manage Google Spreadsheets from R |
| googleVis | R Interface to Google Charts |
| googleway | Accesses Google Maps APIs to Retrieve Data and Plot Maps |
| GOplot | Visualization of Functional Analysis Data |
| GORCure | Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data |
| goric | Generalized Order-Restricted Information Criterion |
| govStatJPN | functions to get public survey data in Japan |
| gower | Gower's Distance |
| gpairs | gpairs: The Generalized Pairs Plot |
| GPareto | Gaussian Processes for Pareto Front Estimation and Optimization |
| GPArotation | GPA Factor Rotation |
| GPB | Generalized Poisson Binomial Distribution |
| gPCA | Batch Effect Detection via Guided Principal Components Analysis |
| gpclib | General Polygon Clipping Library for R |
| GPCMlasso | Differential Item Functioning in Generalized Partial Credit Models |
| GPCSIV | GPCSIV, Generalized Principal Component of Symbolic Interval variables |
| gpDDE | General Profiling Method for Delay Differential Equation |
| gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |
| GPFDA | Apply Gaussian Process in Functional data analysis |
| GPfit | Gaussian Processes Modeling |
| gpg | GNU Privacy Guard for R |
| GPGame | Solving Complex Game Problems using Gaussian Processes |
| GpGp | Fast Gaussian Process Computation Using Vecchia's Approximation |
| gpk | 100 Data Sets for Statistics Education |
| gplm | Generalized Partial Linear Models (GPLM) |
| gplots | Various R Programming Tools for Plotting Data |
| GPLTR | Generalized Partially Linear Tree-Based Regression Model |
| GPM | Gaussian Process Modeling of Multi-Response Datasets |
| gpmap | Analysing and plotting genotype-phenotype maps |
| GPoM | Generalized Polynomial Modelling |
| gppm | Gaussian Process Panel Modeling |
| gpr | A Minimalistic package to apply Gaussian Process in R |
| GPrank | Gaussian Process Ranking of Multiple Time Series |
| GPRMortality | Gaussian Process Regression for Mortality Rates |
| gProfileR | Interface to the 'g:Profiler' Toolkit |
| gptk | Gaussian Processes Tool-Kit |
| gpuR | GPU Functions for R Objects |
| GPvam | Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling |
| gqlr | 'GraphQL' Server in R |
| gquad | Prediction of G Quadruplexes and Other Non-B DNA Motifs |
| Grace | Graph-Constrained Estimation and Hypothesis Tests |
| gradDescent | Gradient Descent for Regression Tasks |
| grade | Binary Grading functions for R |
| gradientPickerD3 | Interactive Color Gradient Picker Using 'htmlwidgets' and the Modified JS Script 'jquery-gradient-picker' |
| gRain | Graphical Independence Networks |
| gramEvol | Grammatical Evolution for R |
| GrammR | Graphical Representation and Modeling of Metagenomic Reads |
| GRANBase | Creating Continuously Integrated Package Repositories from Manifests |
| GRANCore | Classes and Methods for 'GRANBase' |
| granova | Graphical Analysis of Variance |
| granovaGG | Graphical Analysis of Variance Using ggplot2 |
| GRAPE | Gene-Ranking Analysis of Pathway Expression |
| grapes | Make Binary Operators |
| gRapfa | Acyclic Probabilistic Finite Automata |
| GrapheR | A Multi-Platform GUI for Drawing Customizable Graphs in R |
| grapherator | A Modular Multi-Step Graph Generator |
| GraphFactor | Network Topology of Intravariable Clusters with Intervariable Links |
| graphframes | Interface for 'GraphFrames' |
| graphicalVAR | Graphical VAR for Experience Sampling Data |
| graphicsQC | Quality Control for Graphics in R |
| graphkernels | Graph Kernels |
| graphon | A Collection of Graphon Estimation Methods |
| GraphPCA | Graphical Tools of Histogram PCA |
| graphql | A GraphQL Query Parser |
| graphscan | Cluster Detection with Hypothesis Free Scan Statistic |
| graphTweets | Visualise Twitter Interactions |
| GrassmannOptim | Grassmann Manifold Optimization |
| graticule | Meridional and Parallel Lines for Maps |
| grattan | Australian Tax Policy Analysis |
| gravity | Estimation Methods for Gravity Models |
| gRbase | A Package for Graphical Modelling in R |
| GRCdata | Parameter Inference and Optimal Designs for Grouped and/or Right-Censored Count Data |
| grec | GRadient-Based RECognition of Spatial Patterns in Environmental Data |
| GreedyEPL | Greedy Expected Posterior Loss |
| GreedyExperimentalDesign | Greedy Experimental Design Construction |
| GreedyExperimentalDesignJARs | GreedyExperimentalDesign JARs |
| GreedySBTM | Greedy Stochastic Block Transition Models |
| Greg | Regression Helper Functions |
| gren | Adaptive Group-Regularized Logistic Elastic Net Regression |
| GREP2 | GEO RNA-Seq Experiments Processing Pipeline |
| greport | Graphical Reporting for Clinical Trials |
| greta | Simple and Scalable Statistical Modelling in R |
| grex | Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data |
| greybox | Toolbox for Model Building and Forecasting |
| greyzoneSurv | Fit a Grey-Zone Model with Survival Data |
| grf | Generalized Random Forests (Beta) |
| Grid2Polygons | Convert Spatial Grids to Polygons |
| gridBase | Integration of base and grid graphics |
| gridDebug | Debugging 'grid' Graphics |
| gridExtra | Miscellaneous Functions for "Grid" Graphics |
| gridGraphics | Redraw Base Graphics Using 'grid' Graphics |
| gridGraphviz | Drawing Graphs with 'grid' |
| gridsample | Tools for Grid-Based Survey Sampling Design |
| gridsampler | A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies |
| gridSVG | Export 'grid' Graphics as SVG |
| GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |
| gRim | Graphical Interaction Models |
| grImport | Importing Vector Graphics |
| grImport2 | Importing 'SVG' Graphics |
| GrimR | Calculate Optical Parameters from Spindle Stage Measurements |
| grnn | General regression neural network |
| GROAN | Genomic Regression Workbench |
| groc | Generalized Regression on Orthogonal Components |
| gromovlab | Gromov-Hausdorff Type Distances for Labeled Metric Spaces |
| groupdata2 | Creating Groups from Data |
| grouped | Regression Analysis of Grouped and Coarse Data |
| groupedstats | Grouped Statistical Analyses in a Tidy Way |
| groupedSurv | Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function |
| groupICA | Independent Component Analysis for Grouped Data |
| groupRemMap | Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty |
| GroupSeq | A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs |
| groupsubsetselection | Group Subset Selection |
| GroupTest | Multiple Testing Procedure for Grouped Hypotheses |
| grove | Wavelet Functional ANOVA Through Markov Groves |
| growcurves | Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects |
| growfunctions | Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data |
| growth | Multivariate Normal and Elliptically-Contoured Repeated Measurements Models |
| growthcurver | Simple Metrics to Summarize Growth Curves |
| growthmodels | Nonlinear Growth Models |
| growthrate | Bayesian reconstruction of growth velocity |
| growthrates | Estimate Growth Rates from Experimental Data |
| grplasso | Fitting User-Specified Models with Group Lasso Penalty |
| grpreg | Regularization Paths for Regression Models with Grouped Covariates |
| grpregOverlap | Penalized Regression Models with Overlapping Grouped Covariates |
| grpSLOPE | Group Sorted L1 Penalized Estimation |
| grpss | Group Screening and Selection |
| GrpString | Patterns and Statistical Differences Between Two Groups of Strings |
| grr | Alternative Implementations of Base R Functions |
| GRS.test | GRS Test for Portfolio Efficiency, Its Statistical Power Analysis, and Optimal Significance Level Calculation |
| grt | General Recognition Theory |
| GRTo | Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes |
| GSA | Gene set analysis |
| GSAfisherCombined | Gene Set Analysis with Fisher Combined Method |
| GSAgm | Gene Set Analysis using the Gamma Method |
| gsalib | Utility Functions For GATK |
| GSAQ | Gene Set Analysis with QTL |
| gsarima | Two functions for Generalized SARIMA time series simulation |
| gsbDesign | Group Sequential Bayes Design |
| gscounts | Group Sequential Designs with Negative Binomial Outcomes |
| gsDesign | Group Sequential Design |
| GSE | Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data |
| gsEasy | Gene Set Enrichment Analysis in R |
| GSED | Group Sequential Enrichment Design |
| gSeg | Graph-Based Change-Point Detection (g-Segmentation) |
| gSEM | Semi-Supervised Generalized Structural Equation Modeling |
| gset | Group Sequential Design in Equivalence Studies |
| gsg | Calculation of selection coefficients |
| gsheet | Download Google Sheets Using Just the URL |
| GSIF | Global Soil Information Facilities |
| gskat | GEE_KM |
| gsl | Wrapper for the Gnu Scientific Library |
| gsloid | Global Sea Level and Oxygen Isotope Data |
| GSM | Gamma Shape Mixture |
| gsmoothr | Smoothing tools |
| GSMX | Multivariate Genomic Selection |
| GSODR | Global Surface Summary of the Day ('GSOD') Weather Data Client |
| GSparO | Group Sparse Optimization |
| gsrsb | Group Sequential Refined Secondary Boundary |
| gss | General Smoothing Splines |
| gsscopu | Copula Density and 2-D Hazard Estimation using Smoothing Splines |
| GSSE | Genotype-Specific Survival Estimation |
| gstat | Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation |
| gsubfn | Utilities for Strings and Function Arguments |
| gsw | Gibbs Sea Water Functions |
| GsymPoint | Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests |
| gsynth | Generalized Synthetic Control Method |
| gt4ireval | Generalizability Theory for Information Retrieval Evaluation |
| gtable | Arrange 'Grobs' in Tables |
| gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |
| gte | Generalized Turnbull's Estimator |
| gTests | Graph-Based Two-Sample Tests |
| gtheory | Apply Generalizability Theory with R |
| gtools | Various R Programming Tools |
| gtop | Game-Theoretically OPtimal (GTOP) Reconciliation Method |
| gtrendsR | Perform and Display Google Trends Queries |
| gtWAS | Genome and Transcriptome Wide Association Study |
| gtx | Genetics ToolboX |
| GuardianR | The Guardian API Wrapper |
| Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |
| guess | Adjust Estimates of Learning for Guessing |
| GUIDE | GUI for DErivatives in R |
| GUIgems | Graphical User Interface for Generalized Multistate Simulation Model |
| GUILDS | Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure |
| GUIProfiler | Graphical User Interface for Rprof() |
| gumbel | The Gumbel-Hougaard Copula |
| GUniFrac | Generalized UniFrac Distances |
| gunsales | Statistical Analysis of Monthly Background Checks of Gun Purchases |
| gustave | A User-Oriented Statistical Toolkit for Analytical Variance Estimation |
| gutenbergr | Download and Process Public Domain Works from Project Gutenberg |
| GUTS | Fast Calculation of the Likelihood of a Stochastic Survival Model |
| gvc | Global Value Chains Tools |
| gvcm.cat | Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs |
| gvcR | Genotypic Variance Components |
| gvlma | Global Validation of Linear Models Assumptions |
| GWAF | Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data |
| GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |
| GWASinlps | Nonlocal Prior Based Iterative SNP Selection Tool for Genome-Wide Association Studies |
| gwdegree | A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models |
| gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |
| gwfa | Geographically Weighted Fractal Analysis |
| GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |
| gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |
| gWidgets2 | Rewrite of gWidgets API for Simplified GUI Construction |
| gWidgets2RGtk2 | Implementation of gWidgets2 for the RGtk2 Package |
| gWidgets2tcltk | Toolkit Implementation of gWidgets2 for tcltk |
| gWidgetsRGtk2 | Toolkit Implementation of gWidgets for RGtk2 |
| gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |
| GWLelast | Geographically Weighted Logistic Elastic Net Regression |
| GWmodel | Geographically-Weighted Models |
| gWQS | Generalized Weighted Quantile Sum Regression |
| GWRM | Generalized Waring Regression Model for Count Data |
| gwrpvr | Genome-Wide Regression P-Value (Gwrpv) |
| gwrr | Fits geographically weighted regression models with diagnostic tools |
| GWSDAT | GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) |
| GWsignif | Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests |
| GxM | Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models |
| gym | Provides Access to the OpenAI Gym API |
| gyriq | Kinship-Adjusted Survival SNP-Set Analysis |
| h2o | R Interface for 'H2O' |
| h2o4gpu | Interface to 'H2O4GPU' |
| h5 | Interface to the 'HDF5' Library |
| haarfisz | Software to perform Haar Fisz transforms |
| HAC | Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC) |
| HadoopStreaming | Utilities for using R scripts in Hadoop streaming |
| hail | Read HYDRA Rainfall Data |
| hamlet | Hierarchical Optimal Matching and Machine Learning Toolbox |
| HandTill2001 | Multiple Class Area under ROC Curve |
| Hankel | Univariate non-parametric two-sample test based on empirical Hankel transforms |
| hansard | Provides Easy Downloading Capabilities for the UK Parliament API |
| HAP.ROR | Recursive Organizer (ROR) |
| hapassoc | Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm |
| HapEstXXR | Multi-Locus Stepwise Regression |
| Hapi | Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells |
| HAPim | HapIM |
| Haplin | Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes |
| haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |
| haploR | Query 'HaploReg', 'RegulomeDB', 'LDlink' |
| haploReconstruct | Reconstruction of Haplotype-Blocks from Time Series Data |
| HaploSim | Functions to simulate haplotypes |
| haplotyper | Tool for Clustering Genotypes in Haplotypes |
| haplotypes | Haplotype Inference and Statistical Analysis of Genetic Variation |
| happybiRthday | Calculate Upcoming Birthday Dates of Github Repos |
| happytime | Two Games to Relieve the Boredom |
| hapsim | Haplotype Data Simulation |
| HardyWeinberg | Statistical Tests and Graphics for Hardy-Weinberg Equilibrium |
| HARModel | Heterogeneous Autoregressive Models |
| harmonicmeanp | Harmonic Mean p-Values and Model Averaging by Mean Maximum Likelihood |
| HarmonicRegression | Harmonic Regression to One or more Time Series |
| harrietr | Wrangle Phylogenetic Distance Matrices and Other Utilities |
| harrypotter | Palettes Generated from All "Harry Potter" Movies |
| HARtools | Read HTTP Archive ('HAR') Data |
| Harvest.Tree | Harvest the Classification Tree |
| harvestr | A Parallel Simulation Framework |
| hash | Full feature implementation of hash/associated arrays/dictionaries |
| hashFunction | A collection of non-cryptographic hash functions |
| hashids | Generate Short Unique YouTube-Like IDs (Hashes) from Integers |
| hashmap | The Faster Hash Map |
| hashr | Hash R Objects to Integers Fast |
| hasseDiagram | Drawing Hasse Diagram |
| haven | Import and Export 'SPSS', 'Stata' and 'SAS' Files |
| hawkes | Hawkes process simulation and calibration toolkit |
| hazer | Identifying Foggy and Cloudy Images by Quantifying Hazeness |
| hazus | Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters |
| hBayesDM | Hierarchical Bayesian Modeling of Decision-Making Tasks |
| hbdct | Hierarchical Bayesian Design for Clinical Trials |
| HBglm | Hierarchical Bayesian Regression for GLMs |
| hbim | Hill/Bliss Independence Model for Combination Vaccines |
| hbm | Hierarchical Block Matrix Analysis |
| hbmem | Hierarchical Bayesian Analysis of Recognition Memory |
| HBP | Hi-C BED File Analysis Pipeline |
| hbsae | Hierarchical Bayesian Small Area Estimation |
| HBSTM | Hierarchical Bayesian Space-Time models for Gaussian space-time data |
| hcc | Hidden correlation check |
| hcci | Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap) |
| HCmodelSets | Regression with a Large Number of Potential Explanatory Variables |
| hcp | Change Point Estimation for Regression with Heteroscedastic Data |
| HCR | Causal Discovery on Discrete Data using Hidden Compact Representation |
| HCT | Calculates Significance Criteria and Power for a Single Arm Trial |
| hda | Heteroscedastic Discriminant Analysis |
| hdbinseg | Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation |
| HDCI | High Dimensional Confidence Interval Based on Lasso and Bootstrap |
| HDclassif | High Dimensional Supervised Classification and Clustering |
| HDclust | Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks |
| HDcpDetect | Detect Change Points in Means of High Dimensional Data |
| HDDesign | Sample Size Calculation for High Dimensional Classification Study |
| hddplot | Use Known Groups in High-Dimensional Data to Derive Scores for Plots |
| hddtools | Hydrological Data Discovery Tools |
| hdf5r | Interface to the 'HDF5' Binary Data Format |
| HDGLM | Tests for High Dimensional Generalized Linear Models |
| hdi | High-Dimensional Inference |
| HDInterval | Highest (Posterior) Density Intervals |
| hdlm | Fitting High Dimensional Linear Models |
| hdm | High-Dimensional Metrics |
| HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |
| hdme | High-Dimensional Regression with Measurement Error |
| hdnom | Benchmarking and Visualization Toolkit for Penalized Cox Models |
| HDoutliers | Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers |
| hdpca | Principal Component Analysis in High-Dimensional Data |
| HDPenReg | High-Dimensional Penalized Regression |
| hdrcde | Highest Density Regions and Conditional Density Estimation |
| hds | Hazard Discrimination Summary |
| HDtest | High Dimensional Hypothesis Testing for Mean Vectors, Covariance Matrices, and White Noise of Vector Time Series |
| HDtweedie | The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm |
| healthcareai | Tools for Healthcare Machine Learning |
| heatex | Heat exchange calculations during physical activity |
| heatmap.plus | Heatmap with more sensible behavior |
| heatmap3 | An Improved Heatmap Package |
| heatmapFit | Fit Statistic for Binary Dependent Variable Models |
| heatmaply | Interactive Cluster Heat Maps Using 'plotly' |
| heatwaveR | Detect Heatwaves and Cold-Spells |
| heavy | Robust Estimation Using Heavy-Tailed Distributions |
| hedgehog | Property-Based Testing |
| heemod | Markov Models for Health Economic Evaluations |
| hei | Calculate Healthy Eating Index (HEI) Scores |
| heims | Decode and Validate HEIMS Data from Department of Education, Australia |
| helixvis | Visualize Alpha-Helical Peptide Sequences |
| hellno | Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()' |
| helloJavaWorld | Hello Java World |
| helminthR | Access London Natural History Museum Host-Helminth Record Database |
| HelpersMG | Tools for Earth Meteorological Analysis |
| helsinki | R Tools for Helsinki Open Data |
| HEMDAG | Hierarchical Ensemble Methods for Directed Acyclic Graphs |
| heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |
| here | A Simpler Way to Find Your Files |
| hergm | Hierarchical Exponential-Family Random Graph Models |
| heritability | Marker-Based Estimation of Heritability Using Individual Plant or Plot Data |
| HeritSeq | Heritability of Gene Expression for Next-Generation Sequencing |
| hermite | Generalized Hermite Distribution |
| hesim | Health-Economic Simulation Modeling and Decision Analysis |
| het.test | White's Test for Heteroskedasticity |
| hetGP | Heteroskedastic Gaussian Process Modeling and Design under Replication |
| hetmeta | Heterogeneity Measures in Meta-Analysis |
| hett | Heteroscedastic t-Regression |
| heuristica | Heuristics Including Take the Best and Unit-Weight Linear |
| hexbin | Hexagonal Binning Routines |
| hexSticker | Create Hexagon Sticker in R |
| HextractoR | Integrated Tool for Hairping Extraction of RNA Sequences |
| hextri | Hexbin Plots with Triangles |
| hexView | Viewing Binary Files |
| hflights | Flights that departed Houston in 2011 |
| hgam | High-dimensional Additive Modelling |
| hglasso | Learning graphical models with hubs |
| hglm | Hierarchical Generalized Linear Models |
| hglm.data | Data for The hglm Package |
| hgm | Holonomic Gradient Method and Gradient Descent |
| HGNChelper | Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols |
| HGSL | Heterogeneous Group Square-Root Lasso |
| hgutils | Collection of Utility Functions |
| HH | Statistical Analysis and Data Display: Heiberger and Holland |
| HHG | Heller-Heller-Gorfine Tests of Independence and Equality of Distributions |
| hhh4contacts | Age-Structured Spatio-Temporal Models for Infectious Disease Counts |
| hhi | Calculate and Visualize the Herfindahl-Hirschman Index |
| hht | The Hilbert-Huang Transform: Tools and Methods |
| HI | Simulation from distributions supported by nested hyperplanes |
| HIBPwned | Bindings for the 'HaveIBeenPwned.com' Data Breach API |
| HiCblock | Systematic Analysis of Architectural Proteins and Functional Elements in Blocking Long-Range Contacts Between Loci |
| HiCfeat | Multiple Logistic Regression for 3D Chromatin Domain Border Analysis |
| HiCglmi | Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms |
| HiClimR | Hierarchical Climate Regionalization |
| HiCseg | Detection of domains in HiC data |
| hiddenf | The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity |
| HiddenMarkov | Hidden Markov Models |
| HiDimDA | High Dimensional Discriminant Analysis |
| hier.part | Hierarchical Partitioning |
| hierarchicalDS | Functions For Performing Hierarchical Analysis of Distance Sampling Data |
| hierarchicalSets | Set Data Visualization Using Hierarchies |
| hierband | Convex Banding of the Covariance Matrix |
| hierDiversity | Hierarchical Multiplicative Partitioning of Complex Phenotypes |
| hierfstat | Estimation and Tests of Hierarchical F-Statistics |
| hierNet | A Lasso for Hierarchical Interactions |
| HierO | A graphical user interface for calculating power and sample size for hierarchical data |
| hiertest | Convex Hierarchical Testing of Interactions |
| HIest | Hybrid index estimation |
| highcharter | A Wrapper for the 'Highcharts' Library |
| highD2pop | Two-Sample Tests for Equality of Means in High Dimension |
| HighDimOut | Outlier Detection Algorithms for High-Dimensional Data |
| highfrequency | Tools for Highfrequency Data Analysis |
| highlight | Syntax Highlighter |
| highlightHTML | Highlight HTML Text and Tables |
| highmean | Two-Sample Tests for High-Dimensional Mean Vectors |
| highr | Syntax Highlighting for R Source Code |
| highriskzone | Determining and Evaluating High-Risk Zones |
| highSCREEN | High-Throughput Screening for Plate Based Assays |
| highTtest | Simultaneous Critical Values for t-Tests in Very High Dimensions |
| higrad | Statistical Inference for Online Learning and Stochastic Approximation via HiGrad |
| hillmakeR | Perform occupancy analysis |
| HiLMM | Estimation of Heritability in Linear Mixed Models |
| HIMA | High-Dimensional Mediation Analysis |
| hindexcalculator | H-Index Calculator using Data from a Web of Science (WoS) Citation Report |
| hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |
| hiPOD | hierarchical Pooled Optimal Design |
| hipread | Read Hierarchical Fixed Width Files |
| HiResTEC | Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data |
| hIRT | Hierarchical Item Response Theory Models |
| hisse | Hidden State Speciation and Extinction |
| HistData | Data Sets from the History of Statistics and Data Visualization |
| HistDAWass | Histogram-Valued Data Analysis |
| histmdl | A Most Informative Histogram-Like Model |
| histogram | Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins |
| HistogramTools | Utility Functions for R Histograms |
| historydata | Data Sets for Historians |
| histry | Enhanced Command History Tracking for R Sessions and Dynamic Documents |
| hit | Hierarchical Inference Testing |
| hitandrun | "Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes |
| HIV.LifeTables | HIV calibrated model life tables for countries with generalized HIV epidemics |
| hive | Hadoop InteractiVE |
| HiveR | 2D and 3D Hive Plots for R |
| HK80 | Conversion Tools for HK80 Geographical Coordinate System |
| hkclustering | Ensemble Clustering using K Means and Hierarchical Clustering |
| hkevp | Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012) |
| hkex.api | API to Retrieve Data from Hong Kong Stock Exchange |
| HKprocess | Hurst-Kolmogorov Process |
| HLMdiag | Diagnostic Tools for Hierarchical (Multilevel) Linear Models |
| HLSM | Hierarchical Latent Space Network Model |
| HMDHFDplus | Read Human Mortality Database and Human Fertility Database Data from the Web |
| hmeasure | The H-measure and other scalar classification performance metrics |
| hmi | Hierarchical Multiple Imputation |
| Hmisc | Harrell Miscellaneous |
| HMM | HMM - Hidden Markov Models |
| hmm.discnp | Hidden Markov Models with Discrete Non-Parametric Observation Distributions |
| HMMCont | Hidden Markov Model for Continuous Observations Processes |
| HMMEsolver | A Fast Solver for Henderson Mixed Model Equation via Row Operations |
| HMMextra0s | Hidden Markov Models with Extra Zeros |
| hmmm | Hierarchical Multinomial Marginal Models |
| HMMoce | Improved Analysis of Marine Animal Movement Data Using Hidden Markov Models |
| HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |
| HMPTrees | Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data |
| HMR | Flux Estimation with Static Chamber Data |
| hms | Pretty Time of Day |
| HMVD | Group Association Test using a Hidden Markov Model |
| hNMF | Hierarchical Non-Negative Matrix Factorization |
| hnp | Half-Normal Plots with Simulation Envelopes |
| hoa | Higher Order Likelihood Inference |
| hoardeR | Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices |
| hoardr | Manage Cached Files |
| hogsvdR | Higher-Order Generalized Singular Value Decomposition |
| holdem | Texas Holdem Simulator |
| Holidays | Holiday and Half-Day Data, for Use with the 'TimeWarp' Package |
| homals | Gifi Methods for Optimal Scaling |
| homeR | Useful Functions for Building Physics |
| Homeric | Doughnut Plots |
| hommel | Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method |
| homologene | Quick Access to Homology Information |
| homomorpheR | Homomorphic Computations in R |
| HomoPolymer | Theoretical Model to Simulate Radical Polymerization |
| homtest | Homogeneity tests for Regional Frequency Analysis |
| hopbyhop | Transmissions and Receptions in a Hop by Hop Network |
| horizon | Horizon Search Algorithm |
| HoRM | Supplemental Functions and Datasets for "Handbook of Regression Methods" |
| hornpa | Horn's (1965) Test to Determine the Number of Components/Factors |
| horserule | Flexible Non-Linear Regression with the HorseRule Algorithm |
| horseshoe | Implementation of the Horseshoe Prior |
| hot.deck | Multiple Hot-Deck Imputation |
| HotDeckImputation | Hot Deck Imputation Methods for Missing Data |
| Hotelling | Hotelling's T^2 Test and Variants |
| hotspot | Software Hotspot Analysis |
| hotspots | Hot Spots |
| housingData | U.S. Housing Data from 2008 to 2016 |
| howmany | A lower bound for the number of correct rejections |
| HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |
| hpcwld | High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion |
| hpiR | House Price Indexes |
| hpoPlot | Functions for Plotting HPO Terms |
| hqmisc | Miscellaneous convenience functions and dataset |
| hqreg | Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression |
| hR | An HR Analytics Toolkit |
| hrbrthemes | Additional Themes, Theme Components and Utilities for 'ggplot2' |
| hrIPW | Hazard Ratio Estimation using Cox Model Weighted by the Estimated Propensity Score |
| HRM | High-Dimensional Repeated Measures |
| HRQoL | Health Related Quality of Life Analysis |
| HSAR | Hierarchical Spatial Autoregressive Model |
| HSAUR | A Handbook of Statistical Analyses Using R (1st Edition) |
| HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |
| HSAUR3 | A Handbook of Statistical Analyses Using R (3rd Edition) |
| hsdar | Manage, Analyse and Simulate Hyperspectral Data |
| HSDiC | Homogeneity and Sparsity Detection Incorporating Prior Constraint Information |
| hSDM | hierarchical Bayesian species distribution models |
| hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |
| hsm | A Path-Based BCD for Proximal Function of Latent Group Lasso |
| hsmm | Hidden Semi Markov Models |
| hsphase | Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data |
| HSSVD | Biclustering with Heterogeneous Variance |
| htdp | Horizontal Time Dependent Positioning |
| htm2txt | Convert Html into Text |
| htmltab | Assemble Data Frames from HTML Tables |
| htmlTable | Advanced Tables for Markdown/HTML |
| htmltidy | Tidy Up and Test XPath Queries on HTML and XML Content |
| htmltools | Tools for HTML |
| HTMLUtils | Facilitates Automated HTML Report Creation |
| htmlwidgets | HTML Widgets for R |
| htree | Historical Tree Ensembles for Longitudinal Data |
| hts | Hierarchical and Grouped Time Series |
| HTSCluster | Clustering High-Throughput Transcriptome Sequencing (HTS) Data |
| HTSSIP | High Throughput Sequencing of Stable Isotope Probing Data Analysis |
| httk | High-Throughput Toxicokinetics |
| httpcache | Query Cache for HTTP Clients |
| httpcode | 'HTTP' Status Code Helper |
| httping | 'Ping' 'URLs' to Time 'Requests' |
| httpRequest | Basic HTTP Request |
| httptest | A Test Environment for HTTP Requests |
| httpuv | HTTP and WebSocket Server Library |
| httr | Tools for Working with URLs and HTTP |
| hues | Distinct Colours Palettes Based on 'iwanthue' |
| huge | High-Dimensional Undirected Graph Estimation |
| HUM | compute HUM value and visualize ROC curves |
| humanFormat | Human-friendly formatting functions |
| humaniformat | A Parser for Human Names |
| humanize | Create Values for Human Consumption |
| humanleague | Synthetic Population Generator |
| humidity | Calculate Water Vapor Measures from Temperature and Dew Point |
| hunspell | High-Performance Stemmer, Tokenizer, and Spell Checker |
| HURDAT | Hurricane Re-Analysis Project |
| hurdlr | Zero-Inflated and Hurdle Modelling Using Bayesian Inference |
| hurricaneexposure | Explore and Map County-Level Hurricane Exposure in the United States |
| hutils | Miscellaneous R Functions and Aliases |
| huxtable | Easily Create and Style Tables for LaTeX, HTML and Other Formats |
| HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |
| hwde | Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci |
| HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing |
| HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |
| hwriter | HTML Writer - Outputs R objects in HTML format |
| hwwntest | Tests of White Noise using Wavelets |
| HWxtest | Exact Tests for Hardy-Weinberg Proportions |
| hybridEnsemble | Build, Deploy and Evaluate Hybrid Ensembles |
| HybridFS | A Hybrid Filter-Wrapper Feature Selection Method |
| hybridHclust | Hybrid Hierarchical Clustering |
| HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |
| hybridModels | Stochastic Hybrid Models in Dynamic Networks |
| HydeNet | Hybrid Bayesian Networks Using R and JAGS |
| hydroApps | Tools and models for hydrological applications |
| hydrogeo | Groundwater Data Presentation and Interpretation |
| hydroGOF | Goodness-of-Fit Functions for Comparison of Simulated and Observed Hydrological Time Series |
| hydrolinks | Hydrologic Network Linking Data and Tools |
| HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |
| hydroPSO | Particle Swarm Optimisation, with Focus on Environmental Models |
| hydroscoper | Interface to the Greek National Data Bank for Hydrometeorological Information |
| hydrostats | Hydrologic Indices for Daily Time Series Data |
| hydroTSM | Time Series Management, Analysis and Interpolation for Hydrological Modelling |
| hyfo | Hydrology and Climate Forecasting |
| hyper.fit | Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter |
| hyper2 | The Hyperdirichlet Distribution, Mark 2 |
| HyperbolicDist | The hyperbolic distribution |
| hypercube | Organizing Data in a Hypercube |
| hypergate | Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry |
| hypergea | Hypergeometric Tests |
| hypergeo | The Gauss Hypergeometric Function |
| hypersampleplan | Attribute Sampling Plan with Exact Hypergeometric Probabilities using Chebyshev Polynomials |
| hyperSMURF | Hyper-Ensemble Smote Undersampled Random Forests |
| hyperSpec | Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...) |
| hypervolume | High Dimensional Geometry and Set Operations Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls |
| hyphenatr | Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library |
| HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |
| hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |
| hypothesisr | Wrapper for the 'Hypothes.is' Web Annotation Service |
| HYRISK | Hybrid Methods for Addressing Uncertainty in RISK Assessments |
| hysteresis | Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses |
| hzar | Hybrid Zone Analysis using R |
| IAbin | Plotting N-T Plane for Decision on Performing an Interim Analysis |
| iadf | Analysis of Intra Annual Density Fluctuations |
| IalsaSynthesis | Synthesizing Information Across Collaborating Research |
| IAPWS95 | Thermophysical Properties of Water and Steam |
| IASD | Model Selection for Index of Asymmetry Distribution |
| IAT | Cleaning and Visualizing Implicit Association Test (IAT) Data |
| IATanalytics | Compute Effect Sizes and Reliability for Implicit Association Test (IAT) Data |
| IATScore | Scoring Algorithm for the Implicit Association Test (IAT) |
| IATscores | Implicit Association Test Scores Using Robust Statistics |
| iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH Data |
| IBCF.MTME | Item Based Collaborative Filtering for Multi-Trait and Multi-Environment Data |
| ibd | Incomplete Block Designs |
| IBDhaploRtools | Functions for the Analysis of IBD Haplo Output |
| IBDLabels | Convert Between Different IBD-State Labelling Schemes |
| ibdreg | Regression Methods for IBD Linkage With Covariates |
| IBDsim | Simulation of Chromosomal Regions Shared by Family Members |
| ibeemd | Irregular-lattice based ensemble empirical mode decomposition |
| ibelief | Belief Function Implementation |
| ibm | Individual Based Models in R |
| ibmcraftr | Toolkits to Develop Individual-Based Models in Infectious Disease |
| ibmdbR | IBM in-Database Analytics for R |
| Iboot | Iboot: iterated bootstrap tests and confidence sets |
| ibr | Iterative Bias Reduction |
| IBrokers | R API to Interactive Brokers Trader Workstation |
| iBST | Improper Bagging Survival Tree |
| ic.infer | Inequality Constrained Inference in Linear Normal Situations |
| iC10 | A Copy Number and Expression-Based Classifier for Breast Tumours |
| iC10TrainingData | Training Datasets for iC10 Package |
| IC2 | Inequality and Concentration Indices and Curves |
| ic50 | Standardized high-throughput evaluation of cell-based compound screens |
| ica | Independent Component Analysis |
| ICAFF | Imperialist Competitive Algorithm |
| icamix | Estimation of ICA Mixture Models |
| ICAOD | Optimal Designs for Nonlinear Models |
| icapca | Mixed ICA/PCA |
| icarus | Calibrates and Reweights Units in Samples |
| ICBayes | Bayesian Semiparametric Models for Interval-Censored Data |
| ICC | Facilitating Estimation of the Intraclass Correlation Coefficient |
| ICC.Sample.Size | Calculation of Sample Size and Power for ICC |
| ICcalib | Cox Model with Interval-Censored Starting Time of a Covariate |
| iccbeta | Multilevel Model Intraclass Correlation for Slope Heterogeneity |
| ICCbin | Facilitates Clustered Binary Data Generation, and Estimation of Intracluster Correlation Coefficient (ICC) for Binary Data |
| icd | Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes |
| icd.data | International Classifcation of Diseases (ICD) Data |
| icdGLM | EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models |
| ICE | Iterated Conditional Expectation |
| ICEbox | Individual Conditional Expectation Plot Toolbox |
| IceCast | Apply Statistical Post-Processing to Improve Sea Ice Predictions |
| ICEinfer | Incremental Cost-Effectiveness Inference using Two Unbiased Samples |
| icenReg | Regression Models for Interval Censored Data |
| icensBKL | Accompanion to the Book on Interval Censoring by Bogaerts, Komarek, and Lesaffre |
| icensmis | Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes |
| icesAdvice | Functions Related to ICES Advice |
| icesDatras | DATRAS Trawl Database Web Services |
| icesSAG | Stock Assessment Graphs Database Web Services |
| icesTAF | Functions to Support the ICES Transparent Assessment Framework |
| icesVocab | ICES Vocabularies Database Web Services |
| ICGE | Estimation of number of clusters and identification of atypical units |
| ICGOR | Fit Generalized Odds Rate Hazards Model with Interval Censored Data |
| iClick | A Button-Based GUI for Financial and Economic Data Analysis |
| iCluster | Integrative clustering of multiple genomic data types |
| icmm | Empirical Bayes Variable Selection via ICM/M Algorithm |
| icosa | Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra |
| icpsrdata | Reproducible Data Retrieval from the ICPSR Archive |
| icr | Compute Krippendorff's Alpha |
| ICRanks | Simultaneous Confidence Intervals for Ranks |
| icRSF | A Modified Random Survival Forest Algorithm |
| ICS | Tools for Exploring Multivariate Data via ICS/ICA |
| ICSNP | Tools for Multivariate Nonparametrics |
| ICSOutlier | Outlier Detection Using Invariant Coordinate Selection |
| ICSShiny | ICS via a Shiny Application |
| ICsurv | A package for semiparametric regression analysis of interval-censored data |
| icsw | Inverse Compliance Score Weighting |
| ICtest | Estimating and Testing the Number of Interesting Components in Linear Dimension Reduction |
| ICV | Indirect Cross-Validation (ICV) for Kernel Density Estimation |
| idar | Individual Diversity-Area Relationships |
| idbg | R debugger |
| idbr | R Interface to the US Census Bureau International Data Base API |
| IDCard | Update Chinese ID Card Number to Eighteen Digits |
| IDE | Integro-Difference Equation Spatio-Temporal Models |
| idealstan | Bayesian IRT Ideal Point Models with 'Stan' |
| idefix | Efficient Designs for Discrete Choice Experiments |
| idem | Inference in Randomized Controlled Trials with Death and Missingness |
| idendr0 | Interactive Dendrograms |
| identity | Jacquard Condensed Coefficients of Identity |
| ider | Various Methods for Estimating Intrinsic Dimension |
| IDetect | Isolate-Detect Methodology for Multiple Change-Point Detection |
| IDF | Estimation and Plotting of IDF Curves |
| iDINGO | Integrative Differential Network Analysis in Genomics |
| idm | Incremental Decomposition Methods |
| IDmining | Intrinsic Dimension for Data Mining |
| idmTPreg | Regression Model for Progressive Illness Death Data |
| iDOS | Integrated Discovery of Oncogenic Signatures |
| IDPmisc | 'Utilities of Institute of Data Analyses and Process Design (www.zhaw.ch/idp)' |
| IDPSurvival | Imprecise Dirichlet Process for Survival Analysis |
| idr | Irreproducible discovery rate |
| ids | Generate Random Identifiers |
| IDSpatialStats | Estimate Global Clustering in Infectious Disease |
| idx2r | Convert Files to and from IDX Format to Vectors, Matrices and Arrays |
| iDynoR | R Analysis package for iDynoMiCS Simulation Results |
| ie2misc | Irucka Embry's Miscellaneous USGS Functions |
| iECAT | Integrating External Controls into Association Test |
| ieeeround | Functions to set and get the IEEE rounding mode |
| iemisc | Irucka Embry's Miscellaneous Functions |
| iemiscdata | Irucka Embry's Miscellaneous Data Collection |
| iemisctext | Irucka Embry's Miscellaneous Text Collection |
| ifa | Independent Factor Analysis |
| iFad | An integrative factor analysis model for drug-pathway association inference |
| ifaTools | Toolkit for Item Factor Analysis with 'OpenMx' |
| ifctools | Italian Fiscal Code ('Codice Fiscale') Utilities |
| IFP | Identifying Functional Polymorphisms |
| ifs | Iterated Function Systems |
| ifultools | Insightful Research Tools |
| ig.vancouver.2014.topcolour | Instagram 2014 Vancouver Top Colour Dataset |
| iGasso | Statistical Tests and Utilities for Genetic Association |
| IGG | Inverse Gamma-Gamma |
| IgorR | Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data) |
| IGP | Interchangeable Gaussian Process Models |
| igraph | Network Analysis and Visualization |
| igraphdata | A Collection of Network Data Sets for the 'igraph' Package |
| igraphinshiny | Use 'shiny' to Demo 'igraph' |
| igraphtosonia | Convert iGraph graps to SoNIA .son files |
| iGSEA | Integrative Gene Set Enrichment Analysis Approaches |
| iheatmapr | Interactive, Complex Heatmaps |
| ihs | Inverse Hyperbolic Sine Distribution |
| IHSEP | Inhomogeneous Self-Exciting Process |
| iilasso | Independently Interpretable Lasso |
| IIS | Datasets to Accompany Wolfe and Schneider - Intuitive Introductory Statistics |
| ijtiff | Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files |
| iki.dataclim | Consistency, Homogeneity and Summary Statistics of Climatological Data |
| ilc | Lee-Carter Mortality Models using Iterative Fitting Algorithms |
| ILS | Interlaboratory Study |
| IM | Orthogonal Moment Analysis |
| imageData | Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer |
| imager | Image Processing Library Based on 'CImg' |
| imagerExtra | Extra Image Processing Library Based on 'imager' |
| imaginator | Simulate General Insurance Policies and Losses |
| imagine | IMAGing engINE, Tools for Application of Image Filters to Data Matrices |
| ImaginR | Delimit and Characterize Color Phenotype of the Pearl Oyster |
| IMak | Item Maker |
| Imap | Interactive Mapping |
| imbalance | Preprocessing Algorithms for Imbalanced Datasets |
| imdbapi | Get Movie, Television Data from the 'imdb' Database |
| iMediate | Likelihood Methods for Mediation Analysis |
| IMFData | R Interface for International Monetary Fund(IMF) Data API |
| imfr | Download Data from the International Monetary Fund's Data API |
| imguR | An Imgur.com API Client Package |
| IMIFA | Infinite Mixtures of Infinite Factor Analysers and Related Models |
| IMIS | Increamental Mixture Importance Sampling |
| iml | Interpretable Machine Learning |
| IMmailgun | Send Emails using 'Mailgun' |
| immer | Item Response Models for Multiple Ratings |
| Immigrate | Iterative Max-Min Entropy Margin-Maximization with Interaction Terms for Feature Selection |
| IMP | Interactive Model Performance Evaluation |
| imp4p | Imputation for Proteomics |
| IMPACT | The Impact of Items |
| ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |
| impimp | Imprecise Imputation for Statistical Matching |
| implyr | R Interface for Apache Impala |
| import | An Import Mechanism for R |
| importar | Enables Importing/Loading of Packages or Functions While Creating an Alias for Them |
| ImportExport | Import and Export Data |
| imprProbEst | Minimum distance estimation in an imprecise probability model |
| imptree | Classification Trees with Imprecise Probabilities |
| imputeLCMD | A collection of methods for left-censored missing data imputation |
| imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |
| imputeMissings | Impute Missing Values in a Predictive Context |
| imputeMulti | Imputation Methods for Multivariate Multinomial Data |
| imputePSF | Impute Missing Data in Time Series Data with PSF Based Method |
| imputeR | A General Multivariate Imputation Framework |
| ImputeRobust | Robust Multiple Imputation with Generalized Additive Models for Location Scale and Shape |
| imputeTestbench | Test Bench for the Comparison of Imputation Methods |
| imputeTS | Time Series Missing Value Imputation |
| imputeYn | Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares |
| iMRMC | Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics) |
| imsig | Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours |
| IMTest | Information Matrix Test for Generalized Partial Credit Models |
| in2extRemes | Into the extRemes Package |
| inaparc | Initialization Algorithms for Partitioning Cluster Analysis |
| inarmix | Mixture models for longitudinal count data |
| inbreedR | Analysing Inbreeding Based on Genetic Markers |
| inca | Integer Calibration |
| incadata | Recognize and Handle Data in Formats Used by Swedish Cancer Centers |
| INCATome | Internal Control Analysis of Translatome Studies by Microarrays |
| IncDTW | Incremental Calculation of Dynamic Time Warping |
| incgraph | Incremental Graphlet Counting for Network Optimisation |
| incidence | Compute, Handle, Plot and Model Incidence of Dated Events |
| incR | Analysis of Incubation Data |
| inctools | Incidence Estimation Tools |
| IncucyteDRC | Dose Response Curves from Incucyte Proliferation Assays |
| indelmiss | Insertion Deletion Analysis While Accounting for Possible Missing Data |
| IndependenceTests | Nonparametric tests of independence between random vectors |
| IndepTest | Nonparametric Independence Tests Based on Entropy Estimation |
| IndexNumR | Index Number Calculation |
| IndianTaxCalc | Indian Income Tax Calculator |
| indicspecies | Relationship Between Species and Groups of Sites |
| indirect | Elicitation of Independent Conditional Means Priors for Generalised Linear Models |
| INDperform | Evaluation of Indicator Performances for Assessing Ecosystem States |
| IndTestPP | Tests of Independence Between Point Processes in Time |
| inegiR | Integrate INEGI’s (Mexican Stats Office) API with R |
| ineq | Measuring Inequality, Concentration, and Poverty |
| iNEXT | Interpolation and Extrapolation for Species Diversity |
| iNextPD | Interpolation and Extrapolation for Phylogenetic Diversity |
| InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories |
| infer | Tidy Statistical Inference |
| inference | Functions to extract inferential values of a fitted model object |
| InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival |
| inferference | Methods for Causal Inference with Interference |
| inferr | Inferential Statistics |
| InfiniumPurify | Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis |
| Inflation | Core Inflation |
| inflection | Finds the Inflection Point of a Curve |
| influence.ME | Tools for Detecting Influential Data in Mixed Effects Models |
| influence.SEM | Case Influence in Structural Equation Models |
| influenceR | Software Tools to Quantify Structural Importance of Nodes in a Network |
| influxdbr | R Interface to InfluxDB |
| infoDecompuTE | Information Decomposition of Two-Phase Experiments |
| Information | Data Exploration with Information Theory (Weight-of-Evidence and Information Value) |
| InformationValue | Performance Analysis and Companion Functions for Binary Classification Models |
| InformativeCensoring | Multiple Imputation for Informative Censoring |
| informR | Sequence Statistics for Relational Event Models |
| infotheo | Information-Theoretic Measures |
| InfoTrad | Calculates the Probability of Informed Trading (PIN) |
| infra | An Infrastructure Proxy Function |
| infraFDTD.assist | IO Help for infraFDTD Model |
| infuser | A Very Basic Templating Engine |
| Infusion | Inference Using Simulation |
| infutil | Information Utility |
| ini | Read and Write '.ini' Files |
| injectoR | R Dependency Injection |
| InjurySeverityScore | Translate ICD-9 into Injury Severity Score |
| INLABMA | Bayesian Model Averaging with INLA |
| inlabru | Spatial Inference using Integrated Nested Laplace Approximation |
| inline | Functions to Inline C, C++, Fortran Function Calls from R |
| inlinedocs | Convert inline comments to documentation |
| inlmisc | Miscellaneous Functions for the USGS INL Project Office |
| iNOTE | Integrative Network Omnibus Total Effect Test |
| inpdfr | Analyse Text Documents Using Ecological Tools |
| inplace | In-place Operators for R |
| InPosition | Inference Tests for ExPosition |
| insect | Informatic Sequence Classification Trees |
| insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes |
| InSilicoVA | Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm |
| insol | Solar Radiation |
| InspectChangepoint | High-Dimensional Changepoint Estimation via Sparse Projection |
| inspectr | Perform Basic Checks of Dataframes |
| INSPIRE | Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets |
| install.load | Check, Install and Load CRAN & USGS GRAN Packages |
| installr | Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!) |
| instaR | Access to Instagram API via R |
| insuranceData | A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance |
| intamap | Procedures for Automated Interpolation |
| intamapInteractive | Interactive Add-on Functionality for 'intamap' |
| intccr | Semiparametric Competing Risks Regression under Interval Censoring |
| intcensROC | Fast Spline Function Based Constrained Maximum Likelihood Estimator for AUC Estimation of Interval Censored Survival Data |
| IntClust | Integration of Multiple Data Sets with Clustering Techniques |
| integIRTy | Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory |
| IntegrateBs | Integration for B-Spline |
| IntegratedJM | Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature |
| IntegratedMRF | Integrated Prediction using Uni-Variate and Multivariate Random Forests |
| Interact | Tests for marginal interactions in a 2 class response model |
| interactionTest | Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots |
| InteractiveIGraph | interactive network analysis and visualization |
| interAdapt | interAdapt |
| Interatrix | Compute Chi-Square Measures with Corrections |
| intercure | Cure Rate Estimators for Interval Censored Data |
| interep | Interaction Analysis of Repeated Measure Data |
| InterfaceqPCR | GUI to Analyse qPCR Results after PMA Treatment or not |
| interferenceCI | Exact Confidence Intervals in the Presence of Interference |
| interflex | Multiplicative Interaction Models Diagnostics and Visualization |
| interfr | Interference Color Charts for Polarized Light Microscopy |
| intergraph | Coercion Routines for Network Data Objects |
| interim | Scheduling Interim Analyses in Clinical Trials |
| interlineaR | Importing Interlinearized Corpora and Dictionaries as Produced by Descriptive Linguistics Software |
| internetarchive | An API Client for the Internet Archive |
| interp | Interpolation Methods |
| interplot | Plot the Effects of Variables in Interaction Terms |
| Interpol | Interpolation of amino acid sequences |
| Interpol.T | Hourly interpolation of multiple temperature daily series |
| InterpretMSSpectrum | Interpreting High Resolution Mass Spectra |
| interpretR | Binary Classifier and Regression Model Interpretation Functions |
| InterSIM | Simulation of Inter-Related Genomic Datasets |
| InterVA4 | Replicate and Analyse 'InterVA4' |
| InterVA5 | Replicate and Analyse 'InterVA5' |
| interval | Weighted Logrank Tests and NPMLE for interval censored data |
| intervals | Tools for Working with Points and Intervals |
| IntervalSurgeon | Operating on Integer-Bounded Intervals |
| interventionalDBN | Interventional Inference for Dynamic Bayesian Networks |
| IntLik | Numerical Integration for Integrated Likelihood |
| IntNMF | Integrative Clustering of Multiple Genomic Dataset |
| inTrees | Interpret Tree Ensembles |
| intReg | Interval Regression |
| intRegGOF | Integrated Regression Goodness of Fit |
| IntrinioStockAPI | Wrapper for the 'Intrinio Stock API' |
| intrinsicDimension | Intrinsic Dimension Estimation |
| introgress | methods for analyzing introgression between divergent lineages |
| intrval | Relational Operators for Intervals |
| intRvals | Analysis of Time-Ordered Event Data with Missed Observations |
| intsvy | International Assessment Data Manager |
| intubate | Interface to Popular R Functions for Data Science Pipelines |
| inum | Interval and Enum-Type Representation of Vectors |
| InvariantCausalPrediction | Invariant Causal Prediction |
| InvasionCorrection | Invasion Correction |
| Inventorymodel | Inventory Models |
| investr | Inverse Estimation/Calibration Functions |
| invgamma | The Inverse Gamma Distribution |
| invGauss | Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data |
| invLT | Inversion of Laplace-Transformed Functions |
| io | A Unified Framework for Input-Output Operations in R |
| ioanalysis | Input Output Analysis |
| ioncopy | Calling Copy Number Alterations in Amplicon Sequencing Data |
| ionflows | Calculate the Number of Required Flows for Semiconductor Sequencing |
| ionr | Test for Indifference of Indicator |
| iopsych | Methods for Industrial/Organizational Psychology |
| iosmooth | Functions for Smoothing with Infinite Order Flat-Top Kernels |
| iotables | Importing and Manipulating Symmetric Input-Output Tables |
| iotools | I/O Tools for Streaming |
| ipc | Tools for Message Passing Between Processes |
| IPCAPS | Iterative Pruning to Capture Population Structure |
| ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |
| ipdw | Spatial Interpolation by Inverse Path Distance Weighting |
| ipeaData | Getting Data from IPEADATA |
| IPEC | Root Mean Square Curvature Calculation |
| ipflasso | Integrative Lasso with Penalty Factors |
| ipfp | Fast Implementation of the Iterative Proportional Fitting Procedure in C |
| ipft | Indoor Positioning Fingerprinting Toolset |
| iplots | iPlots - interactive graphics for R |
| IPMpack | Builds and analyses Integral Projection Models (IPMs) |
| IPMRF | Intervention in Prediction Measure (IPM) for Random Forests |
| ipred | Improved Predictors |
| iprior | Regression Modelling using I-Priors |
| ips | Interfaces to Phylogenetic Software in R |
| IPSUR | Introduction to Probability and Statistics Using R |
| iptmnetr | Interface to the 'iPTMnet' API |
| IPtoCountry | Convert IP Addresses to Country Names or Full Location with Geoplotting |
| iptools | Manipulate, Validate and Resolve 'IP' Addresses |
| ipumsr | Read 'IPUMS' Extract Files |
| ipw | Estimate Inverse Probability Weights |
| ipwErrorY | Inverse Probability Weighting Estimation of Average Treatment Effect with Outcome Misclassification |
| IPWsurvival | Propensity Score Based Adjusted Survival Curves and Corresponding Log-Rank Statistic |
| IQCC | Improved Quality Control Charts |
| iqLearn | Interactive Q-Learning |
| irace | Iterated Racing for Automatic Algorithm Configuration |
| iRafNet | Integrative Random Forest for Gene Regulatory Network Inference |
| IRATER | A R Interface for the Instantaneous RATEs (IRATE) Model |
| ircor | Correlation Coefficients for Information Retrieval |
| IRdisplay | 'Jupyter' Display Machinery |
| iRefR | iRefIndex Manager |
| iRegression | Regression Methods for Interval-Valued Variables |
| iRepro | Reproducibility for Interval-Censored Data |
| iRF | iterative Random Forests |
| IrishDirectorates | Irish Companies' Boards from 2003 to 2013 |
| IRISMustangMetrics | Statistics and Metrics for Seismic Data |
| IRISSeismic | Classes and Methods for Seismic Data Analysis |
| irlba | Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices |
| IROmiss | Imputation Regularized Optimization Algorithm |
| irr | Various Coefficients of Interrater Reliability and Agreement |
| irregulAR1 | Functions for Irregularly Sampled AR(1) Processes |
| irrNA | Coefficients of Interrater Reliability - Generalized for Randomly Incomplete Datasets |
| irtDemo | Item Response Theory Demo Collection |
| irtoys | A Collection of Functions Related to Item Response Theory (IRT) |
| IRTpp | Estimating IRT Parameters using the IRT Methodology |
| irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models |
| irtrees | Estimation of Tree-Based Item Response Models |
| irtreliability | Item Response Theory Reliability |
| IRTShiny | Item Response Theory via Shiny |
| isa2 | The Iterative Signature Algorithm |
| ISAT | Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output |
| ISBF | Iterative Selection of Blocks of Features - ISBF |
| ISDA.R | interval symbolic data analysis for R |
| isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |
| iSDM | Invasive Species Distribution Modelling |
| isdparser | Parse 'NOAA' Integrated Surface Data Files |
| IsingFit | Fitting Ising Models Using the ELasso Method |
| isingLenzMC | Monte Carlo for Classical Ising Model |
| IsingSampler | Sampling Methods and Distribution Functions for the Ising Model |
| island | Stochastic Island Biogeography Theory Made Easy |
| ISLR | Data for an Introduction to Statistical Learning with Applications in R |
| ISM | Interpretive Structural Modelling (ISM) |
| ismev | An Introduction to Statistical Modeling of Extreme Values |
| isni | Index of Local Sensitivity to Nonignorability |
| isnullptr | Check if an 'externalptr' is a Null Pointer |
| Iso | Functions to Perform Isotonic Regression |
| IsoCI | Confidence intervals for current status data based on transformations and bootstrap |
| isocir | Isotonic Inference for Circular Data |
| ISOcodes | Selected ISO Codes |
| IsoGene | Order-Restricted Inference for Microarray Experiments |
| isopam | Isopam (Clustering) |
| isopat | Calculation of isotopic pattern for a given molecular formula |
| isoph | Isotonic Proportional Hazards Model |
| IsoplotR | Statistical Toolbox for Radiometric Geochronology |
| ISOpureR | Deconvolution of Tumour Profiles |
| IsoriX | Isoscape Computation and Inference of Spatial Origins using Mixed Models |
| IsoSpecR | The IsoSpec Algorithm |
| isotone | Active Set and Generalized PAVA for Isotone Optimization |
| isotonic.pen | Penalized Isotonic Regression in one and two dimensions |
| IsotopeR | Stable Isotope Mixing Model |
| ISOweek | Week of the year and weekday according to ISO 8601 |
| isqg | In Silico Quantitative Genetics |
| ISR3 | Iterative Sequential Regression |
| isva | Independent Surrogate Variable Analysis |
| ISwR | Introductory Statistics with R |
| italy | The Italian Survey on Household and Wealth, 2008 and 2010 |
| itan | Item Analysis for Multiple Choice Tests |
| itcSegment | Individual Tree Crowns Segmentation |
| itemanalysis | Classical Test Theory Item Analysis |
| iteRates | Parametric rate comparison |
| iterators | Provides Iterator Construct for R |
| iterLap | Approximate Probability Densities by Iterated Laplace Approximations |
| iterpc | Efficient Iterator for Permutations and Combinations |
| itertools | Iterator Tools |
| itertools2 | itertools2: Functions creating iterators for efficient looping |
| ITNr | Analysis of the International Trade Network |
| iTOP | Inferring the Topology of Omics Data |
| itree | Tools for classification and regression trees, with an emphasis on interpretability |
| ITRSelect | Variable Selection for Optimal Individualized Dynamic Treatment Regime |
| itsadug | Interpreting Time Series and Autocorrelated Data Using GAMMs |
| itsmr | Time Series Analysis Using the Innovations Algorithm |
| itunesr | Access iTunes App Store Ratings and Reviews using R |
| IUPS | Incorporating Uncertainties in Propensity Scores |
| ivbma | Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors |
| ivfixed | Instrumental fixed effect panel data model |
| ivlewbel | Uses heteroscedasticity to estimate mismeasured and endogenous regressor models |
| ivmodel | Statistical Inference and Sensitivity Analysis for Instrumental Variables Model |
| ivpack | Instrumental Variable Estimation |
| ivpanel | Instrumental Panel Data Models |
| ivprobit | Instrumental Variables Probit Model |
| ivregEX | Create Independent Evidence in IV Analyses and Do Sensitivity Analysis in Regression and IV Analysis |
| ivtools | Instrumental Variables |
| iWeigReg | Improved methods for causal inference and missing data problems |
| iWISA | Wavelet-Based Index of Storm Activity |
| jaatha | Simulation-Based Maximum Likelihood Parameter Estimation |
| jaccard | Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients |
| jackknifeKME | Jackknife Estimates of Kaplan-Meier Estimators or Integrals |
| jackstraw | Statistical Inference for Unsupervised Learning |
| jacpop | Jaccard Index for Population Structure Identification |
| JADE | Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria |
| jagsUI | A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses |
| JAGUAR | Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) |
| james.analysis | Analysis Tools for the 'JAMES' Framework |
| janeaustenr | Jane Austen's Complete Novels |
| janitor | Simple Tools for Examining and Cleaning Dirty Data |
| jaod | Directory of Open Access Journals Client |
| jarbes | Just a Rather Bayesian Evidence Synthesis |
| JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices |
| JavaGD | Java Graphics Device |
| JBTools | Misc Small Tools and Helper Functions for Other Code of J. Buttlar |
| jcext | Extended Classification of Weather Types |
| jcolors | Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2' |
| Jdmbs | Monte Carlo Option Pricing Algorithms for Jump Diffusion Models with Correlational Companies |
| jdx | 'Java' Data Exchange for 'R' and 'rJava' |
| jeek | A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models |
| jetpack | A Friendly Package Manager |
| jetset | One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays |
| JFE | A Menu-Driven GUI for Analyzing and Modelling Data of Just Finance and Econometrics |
| JGEE | Joint Generalized Estimating Equation Solver |
| JGL | Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes |
| JGR | Java GUI for R |
| jiebaR | Chinese Text Segmentation |
| jiebaRD | Chinese Text Segmentation Data for jiebaR Package |
| jipApprox | Approximate Inclusion Probabilities for Survey Sampling |
| jjb | Balamuta Miscellaneous |
| JM | Joint Modeling of Longitudinal and Survival Data |
| JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |
| jmcm | Joint Mean-Covariance Models using 'Armadillo' and S4 |
| JMcmprsk | Joint Models for Longitudinal Measurements and Competing Risks Failure Time Data |
| jmdem | Fitting Joint Mean and Dispersion Effects Models |
| JMdesign | Joint Modeling of Longitudinal and Survival Data - Power Calculation |
| jmdl | Joint Mean-Correlation Regression Approach for Discrete Longitudinal Data |
| jmetrik | Tools for Interacting with 'jMetrik' |
| JMI | Jackknife Mutual Information |
| Jmisc | Julian Miscellaneous Function |
| jmotif | Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX |
| jmuOutlier | Permutation Tests for Nonparametric Statistics |
| jmv | The 'jamovi' Analyses |
| jmvconnect | Connect to the 'jamovi' Statistical Spreadsheet |
| jmvcore | Dependencies for the 'jamovi' Framework |
| jocre | Joint Confidence Regions |
| Johnson | Johnson Transformation |
| joineR | Joint Modelling of Repeated Measurements and Time-to-Event Data |
| joineRmeta | Joint Modelling for Meta-Analytic (Multi-Study) Data |
| joineRML | Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes |
| joint.Cox | Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis |
| JointAI | Joint Analysis and Imputation of Incomplete Data |
| jointDiag | Joint Approximate Diagonalization of a Set of Square Matrices |
| JointModel | Semiparametric Joint Models for Longitudinal and Counting Processes |
| jointNmix | Joint N-Mixture Models for Site-Associated Species |
| jointPm | Risk estimation using the joint probability method |
| jointseg | Joint Segmentation of Multivariate (Copy Number) Signals |
| joinXL | Perform Joins or Minus Queries on 'Excel' Files |
| jomo | Multilevel Joint Modelling Multiple Imputation |
| JOP | Joint Optimization Plot |
| JoSAE | Unit-Level and Area-Level Small Area Estimation |
| jose | JavaScript Object Signing and Encryption |
| JOUSBoost | Implements Under/Oversampling for Probability Estimation |
| jpeg | Read and write JPEG images |
| JPEN | Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty |
| jpmesh | Utilities for Japanese Mesh Code |
| jpndistrict | Create Japanese Administration Area and Office Maps |
| jqr | Client for 'jq', a 'JSON' Processor |
| JRF | Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks |
| jrich | Jack-Knife Support for Evolutionary Distinctiveness Indices I and W |
| jrvFinance | Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes |
| js | Tools for Working with JavaScript in R |
| JSM | Semiparametric Joint Modeling of Survival and Longitudinal Data |
| jSonarR | jSonar Analytics Platform API for R |
| jsonify | Converts 'R' Objects to Javascript Object Notation (JSON) |
| jsonld | JSON for Linking Data |
| jsonlite | A Robust, High Performance JSON Parser and Generator for R |
| jsonstat | Interface to 'JSON-stat' |
| jsonvalidate | Validate 'JSON' |
| jsr223 | A 'Java' Platform Integration for 'R' with Programming Languages 'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'), and 'Kotlin' |
| jstor | Read Data from JSTOR/DfR |
| jsTree | Create Interactive Trees with the 'jQuery' 'jsTree' Plugin |
| jtGWAS | Efficient Jonckheere-Terpstra Test Statistics |
| jtools | Analysis and Presentation of Social Scientific Data |
| jtrans | Johnson Transformation for Normality |
| jubilee | Forecasting Long-Term Growth of the U.S. Stock Market |
| jug | A Simple Web Framework for R |
| Julia | Fractal Image Data Generator |
| JuliaCall | Seamless Integration Between R and 'Julia' |
| JumpTest | Financial Jump Detection |
| junctions | The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages |
| JuniperKernel | Kernel for 'Jupyter' |
| junr | Access Open Data Through the 'Junar' API |
| jvnVaR | Value at Risk |
| JWileymisc | Miscellaneous Utilities and Functions |
| jwutil | Tools for Data Manipulation and Testing |
| kableExtra | Construct Complex Table with 'kable' and Pipe Syntax |
| kader | Kernel Adaptive Density Estimation and Regression |
| kamila | Methods for Clustering Mixed-Type Data |
| kangar00 | Kernel Approaches for Nonlinear Genetic Association Regression |
| KANT | Package to identify and sort genes overexpressed |
| kantorovich | Kantorovich Distance Between Probability Measures |
| kaphom | Test the Homogeneity of Kappa Statistics |
| KappaGUI | An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa |
| kappalab | Non-Additive Measure and Integral Manipulation Functions |
| kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |
| KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics |
| kaps | K-Adaptive Partitioning for Survival data |
| karaoke | Remove Vocals from a Song |
| KarsTS | An Interface for Microclimate Time Series |
| kazaam | Tools for Tall Distributed Matrices |
| kcirt | k-Cube Thurstonian IRT Models |
| kde1d | Univariate Kernel Density Estimation |
| kdecopula | Kernel Smoothing for Bivariate Copula Densities |
| kdensity | Kernel Density Estimation with Parametric Starts and Asymmetric Kernels |
| kdetrees | Nonparametric method for identifying discordant phylogenetic trees |
| kdevine | Multivariate Kernel Density Estimation with Vine Copulas |
| kdist | K-Distribution and Weibull Paper |
| kdtools | Tools for Working with Multidimensional Data |
| kedd | Kernel Estimator and Bandwidth Selection for Density and Its Derivatives |
| keep | Arrays with Better Control over Dimension Dropping |
| kehra | Collect, Assemble and Model Air Pollution, Weather and Health Data |
| kelvin | Calculate Solutions to the Kelvin Differential Equation using Bessel Functions |
| Kendall | Kendall rank correlation and Mann-Kendall trend test |
| kendallRandomWalks | Simulate and Visualize Kendall Random Walks and Related Distributions |
| KENDL | Kernel-Smoothed Nonparametric Methods for Environmental Exposure Data Subject to Detection Limits |
| KenSyn | Knowledge Synthesis in Agriculture - From Experimental Network to Meta-Analysis |
| kequate | The Kernel Method of Test Equating |
| keras | R Interface to 'Keras' |
| kerasformula | A High-Level R Interface for Neural Nets |
| kerasR | R Interface to the Keras Deep Learning Library |
| kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions |
| KERE | Expectile Regression in Reproducing Kernel Hilbert Space |
| kergp | Gaussian Process Laboratory |
| kernDeepStackNet | Kernel Deep Stacking Networks |
| kerndwd | Distance Weighted Discrimination (DWD) and Kernel Methods |
| kernelboot | Smoothed Bootstrap and Random Generation from Kernel Densities |
| kernelFactory | Kernel Factory: An Ensemble of Kernel Machines |
| Kernelheaping | Kernel Density Estimation for Heaped and Rounded Data |
| KernelKnn | Kernel k Nearest Neighbors |
| kernlab | Kernel-Based Machine Learning Lab |
| kernplus | A Kernel Regression-Based Multidimensional Wind Turbine Power Curve |
| kernscr | Kernel Machine Score Test for Semi-Competing Risks |
| KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |
| KernSmoothIRT | Nonparametric Item Response Theory |
| kexpmv | Matrix Exponential using Krylov Subspace Routines |
| KeyboardSimulator | Simulate Keyboard Press and Mouse Click |
| keyholder | Store Data About Rows |
| keyplayer | Locating Key Players in Social Networks |
| keypress | Wait for a Key Press in a Terminal |
| keyring | Access the System Credential Store from R |
| keyringr | Decrypt Passwords from Gnome Keyring, Windows Data Protection API and macOS Keychain |
| KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |
| kfda | Kernel Fisher Discriminant Analysis |
| kfigr | Integrated Code Chunk Anchoring and Referencing for R Markdown Documents |
| KFKSDS | Kalman Filter, Smoother and Disturbance Smoother |
| kgc | Koeppen-Geiger Climatic Zones |
| KGode | Kernel Based Gradient Matching for Parameter Inference in Ordinary Differential Equations |
| kgschart | KGS Rank Graph Parser |
| khroma | Colour Schemes for Archaeological Data Visualization |
| kidney.epi | Kidney Functions: Clinical and Epidemiological |
| kimisc | Kirill's Miscellaneous Functions |
| kin.cohort | Analysis of Kin-Cohort Studies |
| kineticF | Framework for the Analysis of Kinetic Visual Field Data |
| kinfit | Routines for Fitting Kinetic Models to Chemical Degradation Data |
| kinship2 | Pedigree Functions |
| kirby21.base | Example Data from the Multi-Modal MRI 'Reproducibility' Resource |
| kirby21.fmri | Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource |
| kirby21.t1 | Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource |
| kissmig | a Keep It Simple Species Migration Model |
| kitagawa | Spectral Response of Water Wells to Harmonic Strain and Pressure Signals |
| kknn | Weighted k-Nearest Neighbors |
| klaR | Classification and Visualization |
| klausuR | Multiple Choice Test Evaluation |
| klin | Linear equations with Kronecker structure |
| km.ci | Confidence intervals for the Kaplan-Meier estimator |
| kmconfband | Kaplan-Meier Simultaneous Confidence Band for the Survivor Function |
| kmcudaR | 'Yinyang' K-Means and K-NN using NVIDIA CUDA |
| KMDA | Kernel-Based Metabolite Differential Analysis |
| kmed | Distance-Based k-Medoids |
| kmer | Fast K-Mer Counting and Clustering for Biological Sequence Analysis |
| KMgene | Gene-Based Association Analysis for Complex Traits |
| kmi | Kaplan-Meier Multiple Imputation for the Analysis of Cumulative Incidence Functions in the Competing Risks Setting |
| kml | K-Means for Longitudinal Data |
| kml3d | K-Means for Joint Longitudinal Data |
| kmlcov | Clustering longitudinal data using the likelihood as a metric of distance |
| kmlShape | K-Means for Longitudinal Data using Shape-Respecting Distance |
| kmodR | K-Means with Simultaneous Outlier Detection |
| KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
| KnapsackSampling | Generate Feasible Samples of a Knapsack Problem |
| knitcitations | Citations for 'Knitr' Markdown Files |
| knitLatex | 'Knitr' Helpers - Mostly Tables |
| knitr | A General-Purpose Package for Dynamic Report Generation in R |
| knitrBootstrap | 'knitr' Bootstrap Framework |
| knitrProgressBar | Provides Progress Bars in 'knitr' |
| knncat | Nearest-neighbor Classification with Categorical Variables |
| knnGarden | Multi-distance based k-Nearest Neighbors |
| knnIndep | Independence tests and benchmarks |
| knnp | Time Series Prediction using K-Nearest Neighbors Algorithm (Parallel) |
| knockoff | The Knockoff Filter for Controlled Variable Selection |
| Knoema | Interface to the Knoema API |
| knor | Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means |
| knotR | Knot Diagrams using Bezier Curves |
| KnowBR | Discriminating Well Surveyed Spatial Units from Exhaustive Biodiversity Databases |
| kntnr | R Client for 'kintone' API |
| KODAMA | Knowledge Discovery by Accuracy Maximization |
| kofdata | Get Data from the 'KOF Datenservice' API |
| kofnGA | A Genetic Algorithm for Fixed-Size Subset Selection |
| KOGMWU | Functional Summary and Meta-Analysis of Gene Expression Data |
| kohonen | Supervised and Unsupervised Self-Organising Maps |
| kokudosuuchi | R Interface to 'Kokudo Suuchi' API |
| kolmim | An Improved Evaluation of Kolmogorov's Distribution |
| komadown | R Markdown Templates for the 'KOMA-Script' Classes |
| komaletter | Simple yet Flexible Letters via the 'KOMA-Script LaTeX Bundle' |
| konfound | Quantify the Robustness of Causal Inferences |
| KoNLP | Korean NLP Package |
| koRpus | An R Package for Text Analysis |
| koRpus.lang.en | Language Support for 'koRpus' Package: English |
| KoulMde | Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm |
| Kpart | Cubic Spline Fitting with Knot Selection |
| kpcalg | Kernel PC Algorithm for Causal Structure Detection |
| kpeaks | Determination of K Using Peak Counts of Features for Clustering |
| kpmt | Known Population Median Test |
| kpodclustr | Method for Clustering Partially Observed Data |
| KraljicMatrix | A Quantified Implementation of the Kraljic Matrix |
| kriens | Continuation Passing Style Development |
| KRIG | Spatial Statistic with Kriging |
| krige | Geospatial Kriging with Metropolis Sampling |
| kriging | Ordinary Kriging |
| KrigInv | Kriging-Based Inversion for Deterministic and Noisy Computer Experiments |
| KRIS | Keen and Reliable Interface Subroutines for Bioinformatic Analysis |
| KRLS | Kernel-Based Regularized Least Squares |
| krm | Kernel Based Regression Models |
| KRMM | Kernel Ridge Mixed Model |
| ks | Kernel Smoothing |
| kSamples | K-Sample Rank Tests and their Combinations |
| kscons | A Bayesian Approach for Protein Residue Contact Prediction using the Knob-Socket Model of Protein Tertiary Structure |
| KScorrect | Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Tests |
| KSD | Goodness-of-Fit Tests using Kernelized Stein Discrepancy |
| KSEAapp | Kinase-Substrate Enrichment Analysis |
| kselection | Selection of K in K-Means Clustering |
| KSgeneral | Computing P-Values of the K-S Test for (Dis)Continuous Null Distribution |
| ksrlive | Identify Kinase Substrate Relationships Using Dynamic Data |
| kst | Knowledge Space Theory |
| kstIO | Knowledge Space Theory Input/Output |
| kstMatrix | Basic Functions in Knowledge Space Theory Using Matrix Representation |
| KTensorGraphs | Co-Tucker3 Analysis of Two Sequences of Matrices |
| ktsolve | Configurable function for solving families of nonlinear equations |
| ktspair | k-Top Scoring Pairs for Microarray Classification |
| kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |
| kutils | Project Management Tools |
| kvh | Read/Write Files in Key-Value-Hierarchy Format |
| kwb.hantush | Calculation of Groundwater Mounding Beneath an Infiltration Basin |
| kyotil | Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies |
| kza | Kolmogorov-Zurbenko Adaptive Filters |
| kzfs | Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals |
| kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |
| kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |
| l0ara | Sparse Generalized Linear Model with L0 Approximation for Feature Selection |
| L0Learn | Fast Algorithms for Best Subset Selection |
| l1kdeconv | Deconvolution for LINCS L1000 Data |
| L1pack | Routines for L1 Estimation |
| l2boost | Friedman's Boosting Algorithm for Regularized Linear Regression |
| labdsv | Ordination and Multivariate Analysis for Ecology |
| label.switching | Relabelling MCMC Outputs of Mixture Models |
| labeledLoop | Labeled Loop |
| labeling | Axis Labeling |
| labelled | Manipulating Labelled Data |
| labelrank | Predicting Rankings of Labels |
| labelVector | Label Attributes for Atomic Vectors |
| LabourMarketAreas | Identification, Tuning, Visualisation and Analysis of Labour Market Areas |
| labstatR | Libreria Del Laboratorio Di Statistica Con R |
| labstats | Data Sets for the Book "Experimental Design for Laboratory Biologists" |
| lacm | Latent Autoregressive Count Models |
| LadR | Routines for Fit, Inference and Diagnostics in LAD Models |
| laeken | Estimation of indicators on social exclusion and poverty |
| laercio | Duncan test, Tukey test and Scott-Knott test |
| LaF | Fast Access to Large ASCII Files |
| lagged | Classes and Methods for Lagged Objects |
| LAGOSNE | Interface to the Lake Multi-Scaled Geospatial and Temporal Database |
| laGP | Local Approximate Gaussian Process Regression |
| lagsarlmtree | Spatial Lag Model Trees |
| Lahman | Sean 'Lahman' Baseball Database |
| LakeMetabolizer | Tools for the Analysis of Ecosystem Metabolism |
| lakemorpho | Lake Morphometry Metrics |
| laketemps | Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 |
| LAM | Some Latent Variable Models |
| lambda.r | Modeling Data with Functional Programming |
| lambda.tools | Tools for Modeling Data with Functional Programming |
| Lambda4 | Collection of Internal Consistency Reliability Coefficients |
| LambertW | Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data |
| lamme | Log-Analytic Methods for Multiplicative Effects |
| lamW | Lambert-W Function |
| LANDD | Liquid Association for Network Dynamics Detection |
| landest | Landmark Estimation of Survival and Treatment Effect |
| landpred | Landmark Prediction of a Survival Outcome |
| landsat | Radiometric and topographic correction of satellite imagery |
| landsat8 | Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature |
| landscapemetrics | Landscape Metrics for Categorical Map Patterns |
| landscapeR | Categorical Landscape Simulation Facility |
| landscapetools | Landscape Utility Toolbox |
| landsepi | Landscape Epidemiology and Evolution |
| Langevin | Langevin Analysis in One and Two Dimensions |
| languagelayeR | Access the 'languagelayer' API |
| languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |
| languageserver | Language Server Protocol |
| lans2r | Work with Look at NanoSIMS Data in R |
| LaplaceDeconv | Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval |
| LaplacesDemon | Complete Environment for Bayesian Inference |
| lar | History of labour relations package |
| LARF | Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |
| largeList | Serialization Interface for Large List Objects |
| lars | Least Angle Regression, Lasso and Forward Stagewise |
| lasso2 | L1 constrained estimation aka ‘lasso’ |
| LassoBacktracking | Modelling Interactions in High-Dimensional Data with Backtracking |
| lassopv | Nonparametric P-Value Estimation for Predictors in Lasso |
| lassoscore | High-Dimensional Inference with the Penalized Score Test |
| lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |
| LassoSIR | Sparsed Sliced Inverse Regression via Lasso |
| latdiag | Draws Diagrams Useful for Checking Latent Scales |
| latentnet | Latent Position and Cluster Models for Statistical Networks |
| later | Utilities for Delaying Function Execution |
| Laterality | Functions to Calculate Common Laterality Statistics in Primatology |
| latex2exp | Use LaTeX Expressions in Plots |
| latexpdf | Convert Tables to PDF or PNG |
| lattice | Trellis Graphics for R |
| latticeDensity | Density Estimation and Nonparametric Regression on Irregular Regions |
| LatticeDesign | Lattice-Based Space-Filling Designs |
| latticeExtra | Extra Graphical Utilities Based on Lattice |
| LatticeKrig | Multiresolution Kriging Based on Markov Random Fields |
| lava | Latent Variable Models |
| lava.tobit | Latent Variable Models with Censored and Binary Outcomes |
| lavaan | Latent Variable Analysis |
| lavaan.shiny | Latent Variable Analysis with Shiny |
| lavaan.survey | Complex Survey Structural Equation Modeling (SEM) |
| lavaanPlot | Path Diagrams for Lavaan Models via DiagrammeR |
| lavaSearch2 | Tools for Model Specification in the Latent Variable Framework |
| Lavash | Lava Estimation for the Sum of Sparse and Dense Signals |
| lawn | Client for 'Turfjs' for 'Geospatial' Analysis |
| lawstat | Tools for Biostatistics, Public Policy, and Law |
| lazy | Lazy Learning for Local Regression |
| lazyData | A LazyData Facility |
| lazyeval | Lazy (Non-Standard) Evaluation |
| lazyrmd | Render R Markdown Outputs Lazily |
| lazysql | Lazy SQL Programming |
| lazyWeave | LaTeX Wrappers for R Users |
| lba | Latent Budget Analysis for Compositional Data |
| lbfgs | Limited-memory BFGS Optimization |
| lbfgsb3 | Limited Memory BFGS Minimizer with Bounds on Parameters |
| lbfgsb3c | Limited Memory BFGS Minimizer with Bounds on Parameters with optim() 'C' Interface |
| lbiassurv | Length-biased correction to survival curve estimation |
| lbreg | Log-Binomial Regression with Constrained Optimization |
| LBSPR | Length-Based Spawning Potential Ratio |
| LCA | Localised Co-Dependency Analysis |
| LCAextend | Latent Class Analysis (LCA) with Familial Dependence in Extended Pedigrees |
| LCAvarsel | Variable Selection for Latent Class Analysis |
| lcda | Latent Class Discriminant Analysis |
| LCF | Linear Combination Fitting |
| LCFdata | Data sets for package “LMERConvenienceFunctions” |
| lclGWAS | Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data |
| LCMCR | Bayesian Non-Parametric Latent-Class Capture-Recapture |
| lcmm | Extended Mixed Models Using Latent Classes and Latent Processes |
| lcopula | Liouville Copulas |
| LCox | A Tool for Selecting Genes Related to Survival Outcomes using Longitudinal Gene Expression Data |
| lctools | Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools |
| lcyanalysis | Stock Data Analysis Functions |
| lda | Collapsed Gibbs Sampling Methods for Topic Models |
| ldamatch | Selection of Statistically Similar Research Groups |
| ldat | Large Data Sets |
| ldatuning | Tuning of the Latent Dirichlet Allocation Models Parameters |
| LDAvis | Interactive Visualization of Topic Models |
| ldbod | Local Density-Based Outlier Detection |
| ldbounds | Lan-DeMets Method for Group Sequential Boundaries |
| LDcorSV | Linkage Disequilibrium Corrected by the Structure and the Relatedness |
| LDheatmap | Graphical Display of Pairwise Linkage Disequilibria Between SNPs |
| ldhmm | Hidden Markov Model for Financial Time-Series Based on Lambda Distribution |
| LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |
| LDPD | Probability of Default Calibration |
| ldr | Methods for likelihood-based dimension reduction in regression |
| LDRTools | Tools for Linear Dimension Reduction |
| LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |
| leabRa | The Artificial Neural Networks Algorithm Leabra |
| leaderCluster | Leader Clustering Algorithm |
| LeafArea | Rapid Digital Image Analysis of Leaf Area |
| leaflet | Create Interactive Web Maps with the JavaScript 'Leaflet' Library |
| leaflet.esri | 'ESRI' Bindings for the 'leaflet' Package |
| leaflet.extras | Extra Functionality for 'leaflet' Package |
| leaflet.minicharts | Mini Charts for Interactive Maps |
| leafletCN | An R Gallery for China and Other Geojson Choropleth Map in Leaflet |
| leafletR | Interactive Web-Maps Based on the Leaflet JavaScript Library |
| leafSTAR | Silhouette to Area Ratio of Tilted Surfaces |
| leanpubr | 'Leanpub' API Interface |
| LEANR | Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes |
| LEAP | Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering |
| LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |
| leapp | latent effect adjustment after primary projection |
| leaps | Regression Subset Selection |
| LeArEst | Border and Area Estimation of Data Measured with Additive Error |
| LearnBayes | Functions for Learning Bayesian Inference |
| LearnGeom | Learning Plane Geometry |
| learningCurve | An Implementation of Crawford's and Wright's Learning Curve Production Functions |
| learningr | Data and functions to accompany the book "Learning R" |
| learNN | Examples of Neural Networks |
| learnPopGen | Population Genetic Simulations & Numerical Analysis |
| learnr | Interactive Tutorials for R |
| learnrbook | Datasets for Aphalo's "Learn R" Book |
| learnstats | An Interactive Environment for Learning Statistics |
| ledger | Utilities for Importing Data from Plaintext Accounting Files |
| leerSIECyL | Read Data from the SIE |
| lefse | Phylogenetic and Functional Analyses for Ecology |
| LEGIT | Latent Environmental & Genetic InTeraction (LEGIT) Model |
| leiv | Bivariate Linear Errors-In-Variables Estimation |
| LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (French) |
| lemon | Freshing Up your 'ggplot2' Plots |
| LendingClub | A Lending Club API Wrapper |
| lero.lero | Generate 'Lero Lero' Quotes |
| lessR | Less Code, More Results |
| lest | Vectorised Nested if-else Statements Similar to CASE WHEN in 'SQL' |
| lestat | A Package for Learning Statistics |
| letsR | Tools for Data Handling and Analysis in Macroecology |
| lettercase | Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space |
| lexicon | Lexicons for Text Analysis |
| lexiconPT | Lexicons for Portuguese Text Analysis |
| LexisNexisTools | Working with Files from 'LexisNexis' |
| LexisPlotR | Plot Lexis Diagrams for Demographic Purposes |
| lexRankr | Extractive Summarization of Text with the LexRank Algorithm |
| lfactors | Factors with Levels |
| lfda | Local Fisher Discriminant Analysis |
| LFDR.MLE | Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation |
| LFDREmpiricalBayes | Estimating Local False Discovery Rates Using Empirical Bayes Methods |
| lfe | Linear Group Fixed Effects |
| lfl | Linguistic Fuzzy Logic |
| lfstat | Calculation of Low Flow Statistics for Daily Stream Flow Data |
| lg | Locally Gaussian Distributions: Estimation and Methods |
| lga | Tools for linear grouping analysis (LGA) |
| lgarch | Simulation and Estimation of Log-GARCH Models |
| lgcp | Log-Gaussian Cox Process |
| LGEWIS | Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Studies |
| LGRF | Set-Based Tests for Genetic Association in Longitudinal Studies |
| lgtdl | A Set of Methods for Longitudinal Data Objects |
| lhmixr | Fit Sex-Specific Life History Models with Missing Classifications |
| lhs | Latin Hypercube Samples |
| libamtrack | Computational Routines for Proton and Ion Radiotherapy |
| libcoin | Linear Test Statistics for Permutation Inference |
| LiblineaR | Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library |
| LiblineaR.ACF | Linear Classification with Online Adaptation of Coordinate Frequencies |
| Libra | Linearized Bregman Algorithms for Generalized Linear Models |
| librarian | Install, Update, Load Packages from CRAN and 'GitHub' in One Step |
| librarysnapshot | Library Snapshot for Packages and Dependencies in Use by Current Session |
| libsoc | Read, Create and Write 'PharmML' Standard Output (so) XML Files |
| libstableR | Fast and Accurate Evaluation, Random Number Generation and Parameter Estimation of Skew Stable Distributions |
| LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |
| lidR | Airborne LiDAR Data Manipulation and Visualization for Forestry Applications |
| lifecontingencies | Financial and Actuarial Mathematics for Life Contingencies |
| lifecourse | Quantification of Lifecourse Fluidity |
| LifeHist | Life History Models of Individuals |
| lifelogr | Life Logging |
| LifeTables | Two-Parameter HMD Model Life Table System |
| lift | Compute the Top Decile Lift and Plot the Lift Curve |
| liftLRD | Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series |
| liftr | Containerize R Markdown Documents for Continuous Reproducibility |
| liger | Lightweight Iterative Geneset Enrichment |
| LightningR | Tools for Communication with Lightning-Viz Server |
| lightsout | Implementation of the 'Lights Out' Puzzle Game |
| LIHNPSD | Poisson Subordinated Distribution |
| likelihood | Methods for Maximum Likelihood Estimation |
| likelihoodAsy | Functions for Likelihood Asymptotics |
| likelihoodExplore | Likelihood Exploration |
| likeLTD | Tools to Evaluate DNA Profile Evidence |
| likert | Analysis and Visualization Likert Items |
| lilikoi | Metabolomics Personalized Pathway Analysis Tool |
| LIM | Linear Inverse Model examples and solution methods |
| lime | Local Interpretable Model-Agnostic Explanations |
| limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |
| limSolve | Solving Linear Inverse Models |
| linbin | Binning and Plotting of Linearly Referenced Data |
| LinCal | Static Univariate Frequentist and Bayesian Linear Calibration |
| LindenmayeR | Functions to Explore L-Systems (Lindenmayer Systems) |
| lindia | Automated Linear Regression Diagnostic |
| LindleyR | The Lindley Distribution and Its Modifications |
| linear.tools | Manipulate Formulas and Evaluate Marginal Effects |
| linearQ | Linear Algorithm for Simulating Quantiles in Multiscale Change-Point Segmentation Problem |
| LinearRegressionMDE | Minimum Distance Estimation in Linear Regression Model |
| linemap | Line Maps |
| lineqGPR | Gaussian Process Regression Models with Linear Inequality Constraints |
| linERR | Linear Excess Relative Risk Model |
| lineup | Lining Up Two Sets of Measurements |
| lingtypology | Linguistic Typology and Mapping |
| linguisticsdown | Easy Linguistics Document Writing with R Markdown |
| link2GI | Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools |
| LinkageMapView | Plot Linkage Group Maps with Quantitative Trait Loci |
| linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |
| LinkedMatrix | Column-Linked and Row-Linked Matrices |
| linkim | Linkage information based genotype imputation method |
| linkprediction | Link Prediction Methods |
| linkR | 3D Lever and Linkage Mechanism Modeling |
| linkspotter | Bivariate Correlations Calculation and Visualization |
| linl | 'linl' is not 'Letter' |
| linLIR | linear Likelihood-based Imprecise Regression |
| linpk | Generate Concentration-Time Profiles from Linear PK Systems |
| linprog | Linear Programming / Optimization |
| LinRegInteractive | Interactive Interpretation of Linear Regression Models |
| LINselect | Selection of Linear Estimators |
| lintools | Manipulation of Linear Systems of (in)Equalities |
| lintr | A 'Linter' for R Code |
| LipidMS | Lipid Annotation for LC-MS/MS DIA Data |
| liqueueR | Implements Queue, PriorityQueue and Stack Classes |
| liquidSVM | A Fast and Versatile SVM Package |
| lira | LInear Regression in Astronomy |
| lisp | List-processing à la SRFI-1 |
| lisrelToR | Import output from LISREL into R |
| list | Statistical Methods for the Item Count Technique and List Experiment |
| listarrays | A Toolbox for Working with R Arrays in a Functional Programming Style |
| listdtr | List-Based Rules for Dynamic Treatment Regimes |
| listenv | Environments Behaving (Almost) as Lists |
| LIStest | Tests of independence based on the Longest Increasing Subsequence |
| listless | Convert Lists to Tidy Data Frames |
| listviewer | 'htmlwidget' for Interactive Views of R Lists |
| listWithDefaults | List with Defaults |
| liteq | Lightweight Portable Message Queue Using 'SQLite' |
| littler | R at the Command-Line via 'r' |
| liureg | Liu Regression with Liu Biasing Parameters and Statistics |
| live | Local Interpretable (Model-Agnostic) Visual Explanations |
| livechatR | R Wrapper for LiveChat REST API |
| ljr | Logistic Joinpoint Regression |
| llama | Leveraging Learning to Automatically Manage Algorithms |
| lle | Locally linear embedding |
| lllcrc | Local Log-linear Models for Capture-Recapture |
| LLM | Logit Leaf Model Classifier for Binary Classification |
| llogistic | The L-Logistic Distribution |
| LLSR | Data Analysis of Liquid-Liquid Systems |
| lm.beta | Add Standardized Regression Coefficients to lm-Objects |
| lm.br | Linear Model with Breakpoint |
| lme4 | Linear Mixed-Effects Models using 'Eigen' and S4 |
| lmec | Linear Mixed-Effects Models with Censored Responses |
| lmem.qtler | Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis |
| lmeNB | Compute the Personalized Activity Index Based on a Negative Binomial Model |
| lmeNBBayes | Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model |
| lmenssp | Linear Mixed Effects Models with Non-Stationary Stochastic Processes |
| LMERConvenienceFunctions | Model Selection and Post-hoc Analysis for (G)LMER Models |
| lmeresampler | Bootstrap Methods for Nested Linear Mixed-Effects Models |
| lmerTest | Tests in Linear Mixed Effects Models |
| lmeSplines | Add smoothing spline modelling capability to nlme |
| LMest | Latent Markov Models with and without Covariates |
| lmeVarComp | Testing for a Subset of Variance Components in Linear Mixed Models |
| lmf | Functions for estimation and inference of selection in age-structured populations |
| LMfilteR | Filter Methods for Parameter Estimation in Linear Regression Models |
| lmfor | Functions for Forest Biometrics |
| lmm | Linear Mixed Models |
| lmmen | Linear Mixed Model Elastic Net |
| lmmlasso | Linear mixed-effects models with Lasso |
| lmmot | Multiple Ordinal Tobit (MOT) Model |
| lmmpar | Parallel Linear Mixed Model |
| lmms | Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data |
| lmodel2 | Model II Regression |
| lmom | L-Moments |
| lmomco | L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions |
| Lmoments | L-Moments and Quantile Mixtures |
| lmomPi | (Precipitation) Frequency Analysis and Variability with L-Moments from 'lmom' |
| lmomRFA | Regional Frequency Analysis using L-Moments |
| lmPerm | Permutation Tests for Linear Models |
| lmQCM | An Algorithm for Gene Co-Expression Analysis |
| lmridge | Linear Ridge Regression with Ridge Penalty and Ridge Statistics |
| lmSubsets | Exact Variable-Subset Selection in Linear Regression |
| lmSupport | Support for Linear Models |
| lmtest | Testing Linear Regression Models |
| lmvar | Linear Regression with Non-Constant Variances |
| LN0SCIs | Simultaneous CIs for Ratios of Means of Log-Normal Populations with Zeros |
| LncFinder | LncRNA Identification and Analysis Using Heterologous Features |
| LncMod | Predicting Modulator and Functional/Survival Analysis |
| LncPath | Identifying the Pathways Regulated by LncRNA Sets of Interest |
| LNIRT | LogNormal Response Time Item Response Theory Models |
| loa | Lattice Options and Add-Ins |
| LocalControl | Nonparametric Methods for Generating High Quality Comparative Effectiveness Evidence |
| LocalControlStrategy | Local Control Strategy for Robust Analysis of Cross-Sectional Data |
| localgauss | Estimating Local Gaussian Parameters |
| localIV | Estimation of Marginal Treatment Effects using Local Instrumental Variables |
| localsolver | R API to LocalSolver |
| locfdr | Computes Local False Discovery Rates |
| LocFDRPois | Functions for Performing Local FDR Estimation when Null and Alternative are Poisson |
| locfit | Local Regression, Likelihood and Density Estimation |
| locits | Test of Stationarity and Localized Autocovariance |
| Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |
| Lock5withR | Datasets for 'Statistics: Unlocking the Power of Data' |
| locpol | Kernel Local Polynomial Regression |
| loder | Dependency-Free Access to PNG Image Files |
| lodGWAS | Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection |
| loe | Local Ordinal Embedding |
| log4r | A simple logging system for R, based on log4j |
| logbin | Relative Risk Regression Using the Log-Binomial Model |
| LogConcDEAD | Log-Concave Density Estimation in Arbitrary Dimensions |
| logconcens | Maximum likelihood estimation of a log-concave density based on censored data |
| logcondens | Estimate a Log-Concave Probability Density from Iid Observations |
| logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |
| logcondiscr | Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations |
| logging | R logging package |
| loggit | Effortless Exception Logging |
| loggle | Local Group Graphical Lasso Estimation |
| logiBin | Binning Variables to Use in Logistic Regression |
| LOGICOIL | LOGICOIL: multi-state prediction of coiled-coil oligomeric state |
| LogicReg | Logic Regression |
| logihist | Combined Graphs for Logistic Regression |
| logistf | Firth's Bias-Reduced Logistic Regression |
| logistic4p | Logistic Regression with Misclassification in Dependent Variables |
| LogisticDx | Diagnostic Tests for Models with a Binomial Response |
| logisticPCA | Binary Dimensionality Reduction |
| logisticRR | Adjusted Relative Risk from Logistic Regression |
| logitchoice | Fitting l2-regularized logit choice models via generalized gradient descent |
| LogitNet | Infer network based on binary arrays using regularized logistic regression |
| logitnorm | Functions for the Logitnormal Distribution |
| logKDE | Computing Log-Transformed Kernel Density Estimates for Positive Data |
| loglognorm | Double log normal distribution functions |
| logmult | Log-Multiplicative Models, Including Association Models |
| lognorm | Functions for the Lognormal Distribution |
| logNormReg | log Normal Linear Regression |
| logOfGamma | Natural Logarithms of the Gamma Function for Large Values |
| LogrankA | Logrank Test for Aggregated Survival Data |
| logspline | Routines for Logspline Density Estimation |
| lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |
| lolog | Latent Order Logistic Graph Models |
| lolR | Linear Optimal Low-Rank Projection |
| lomb | Lomb-Scargle Periodogram |
| longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |
| longclust | Model-Based Clustering and Classification for Longitudinal Data |
| longitudinal | Analysis of Multiple Time Course Data |
| longitudinalData | Longitudinal Data |
| longmemo | Statistics for Long-Memory Processes (Book Jan Beran), and Related Functionality |
| longpower | Sample Size Calculations for Longitudinal Data |
| longROC | Time-Dependent Prognostic Accuracy with Multiply Evaluated Bio Markers or Scores |
| longRPart2 | Recursive Partitioning of Longitudinal Data |
| longurl | Expand Short URLs |
| loo | Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |
| lookupTable | Look-Up Tables using S4 |
| loon | Interactive Statistical Data Visualization |
| loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |
| LoopAnalyst | A Collection of Tools to Conduct Levins' Loop Analysis |
| loopr | Uses an Archive to Amend Previous Stages of a Pipe using Current Output |
| loose.rock | Set of Functions to Use in Survival Analysis and in Data Science |
| lordif | Logistic Ordinal Regression Differential Item Functioning using IRT |
| lorec | LOw Rand and sparsE Covariance matrix estimation |
| lorentz | The Lorentz Transform in Relativistic Physics |
| lori | Low-Rank Interaction Contingency Tables |
| LOST | Missing Morphometric Data Simulation and Estimation |
| LotkasLaw | Runs Lotka's Law which is One of the Special Applications of Zipf's Law |
| lowmemtkmeans | Low Memory Use Trimmed K-Means |
| LowRankQP | Low Rank Quadratic Programming |
| LowWAFOMNX | Low WAFOM Niederreiter-Xing Sequence |
| LowWAFOMSobol | Low WAFOM Sobol Sequence |
| lpbrim | LP-BRIM Bipartite Modularity |
| lpc | Lassoed principal components for testing significance of features |
| LPCM | Local Principal Curve Methods |
| lpdensity | Local Polynomial Density Estimation and Inference |
| LPGraph | Nonparametric Smoothing of Laplacian Graph Spectra |
| lpint | Local polynomial estimators of intensity function or its derivatives |
| lpirfs | Local Projections Impulse Response Functions |
| LPKsample | LP Nonparametric High Dimensional K-Sample Comparison |
| lplyr | 'dplyr' Verbs for Lists and Other Verbs for Data Frames |
| LPM | Linear Parametric Models Applied to Hydrological Series |
| lpme | Nonparametric Estimation of Measurement Error Models |
| LPmerge | Merging Linkage Maps by Linear Programming |
| lpmodeler | Modeler for linear programs (LP) and mixed integer linear programs (MILP) |
| LPower | Calculates Power, Sample Size, or Detectable Effect for Longitudinal Analyses |
| LPR | Lasso and Partial Ridge |
| lpridge | Local Polynomial (Ridge) Regression |
| LPS | Linear Predictor Score, for Binary Inference from Multiple Continuous Variables |
| lpSolve | Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |
| lpSolveAPI | R Interface to 'lp_solve' Version 5.5.2.0 |
| LPStimeSeries | Learned Pattern Similarity and Representation for Time Series |
| LPTime | LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling |
| LPWC | Lag Penalized Weighted Correlation for Time Series Clustering |
| lqmm | Linear Quantile Mixed Models |
| lqr | Robust Linear Quantile Regression |
| LRcontrast | Dose Response Signal Detection under Model Uncertainty |
| lrequire | Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars |
| lrgs | Linear Regression by Gibbs Sampling |
| lrmest | Different Types of Estimators to Deal with Multicollinearity |
| LRTH | A Likelihood Ratio Test Accounting for Genetic Heterogeneity |
| LS2W | Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme |
| LS2Wstat | A Multiscale Test of Spatial Stationarity for LS2W Processes |
| lsa | Latent Semantic Analysis |
| LSAfun | Applied Latent Semantic Analysis (LSA) Functions |
| LSAmitR | Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit R' |
| lsasim | Functions to Facilitate the Simulation of Large Scale Assessment Data |
| lsbclust | Least-Squares Bilinear Clustering for Three-Way Data |
| LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |
| LSD | Lots of Superior Depictions |
| LSDinterface | Reading LSD Results (.res) Files |
| LSDsensitivity | Sensitivity Analysis Tools for LSD |
| lsdv | Least square dummy variable regression |
| lsei | Solving Least Squares or Quadratic Programming Problems under Equality/Inequality Constraints |
| lshorth | The Length of the Shorth |
| lsl | Latent Structure Learning |
| lslx | Semi-Confirmatory Structural Equation Modeling via Penalized Likelihood |
| lsm | Estimation of the log Likelihood of the Saturated Model |
| lsmeans | Least-Squares Means |
| LSMonteCarlo | American options pricing with Least Squares Monte Carlo method |
| lspartition | Nonparametric Estimation and Inference Procedures using Partitioning-Based Least Squares Regression |
| LSPFP | Lysate and Secretome Peptide Feature Plotter |
| lspline | Linear Splines with Convenient Parametrisations |
| lspls | LS-PLS Models |
| lsplsGlm | Classification using LS-PLS for Logistic Regression |
| lsr | Companion to "Learning Statistics with R" |
| LSRS | Land Surface Remote Sensing |
| lss | the accelerated failure time model to right censored data based on least-squares principle |
| LSTS | Locally Stationary Time Series |
| ltable | Easy to Make (Lazy) Tables |
| ltbayes | Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |
| ltm | Latent Trait Models under IRT |
| ltmle | Longitudinal Targeted Maximum Likelihood Estimation |
| LTPDvar | LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables |
| LTR | Perform LTR analysis on microarray data |
| LTRCtrees | Survival Trees to Fit Left-Truncated and Right-Censored and Interval-Censored Survival Data |
| ltsa | Linear Time Series Analysis |
| ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |
| ltxsparklines | Lightweight Sparklines for a LaTeX Document |
| lubridate | Make Dealing with Dates a Little Easier |
| luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |
| lucid | Printing Floating Point Numbers in a Human-Friendly Format |
| lucr | Currency Formatting and Conversion |
| ludic | Linkage Using Diagnosis Codes |
| lue | Light Use Efficiency Model to Estimate Biomass and YIELD with and Without Vapour Pressure Deficit |
| lulcc | Land Use Change Modelling in R |
| lumberjack | Track Changes in Data |
| Luminescence | Comprehensive Luminescence Dating Data Analysis |
| LumReader | TL/OSL Reader Simulator |
| lunar | Lunar Phase & Distance, Seasons and Other Environmental Factors |
| lutz | Look Up Time Zones of Point Coordinates |
| luzlogr | Lightweight Logging for R Scripts |
| lvec | Out of Memory Vectors |
| LVGP | Latent Variable Gaussian Process Modeling with Qualitative and Quantitative Input Variables |
| lvm4net | Latent Variable Models for Networks |
| lvnet | Latent Variable Network Modeling |
| lvplot | Letter Value 'Boxplots' |
| LW1949 | An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949) |
| lwgeom | Bindings to Selected 'liblwgeom' Functions for Simple Features |
| lxb | Fast LXB File Reader |
| lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |
| LZeroSpikeInference | Exact Spike Train Inference via L0 Optimization |
| m2b | Movement to Behaviour Inference using Random Forest |
| m2r | Macaulay2 in R |
| M2SMF | Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis |
| M3 | Reading M3 files |
| mable | Maximum Approximate Bernstein Likelihood Estimation |
| maboost | Binary and Multiclass Boosting Algorithms |
| MAc | Meta-Analysis with Correlations |
| macc | Mediation Analysis of Causality under Confounding |
| machina | Machina Time Series Generation and Backtesting |
| MachineShop | Machine Learning Models and Tools |
| machQA | QA Machina Indicators |
| macleish | Retrieve Data from MacLeish Field Station |
| MAclinical | Class prediction based on microarray data and clinical parameters |
| MAd | Meta-Analysis with Mean Differences |
| mada | Meta-Analysis of Diagnostic Accuracy |
| maddison | Maddison Project Database |
| maditr | Pipe-Style Interface for 'data.table' |
| madness | Automatic Differentiation of Multivariate Operations |
| MADPop | MHC Allele-Based Differencing Between Populations |
| madr | Model Averaged Double Robust Estimation |
| madrat | May All Data be Reproducible and Transparent (MADRaT) * |
| mads | Multi-Analysis Distance Sampling |
| madsim | A Flexible Microarray Data Simulation Model |
| Maeswrap | Wrapper Functions for MAESTRA/MAESPA |
| mafs | Multiple Automatic Forecast Selection |
| magclass | Data Class and Tools for Handling Spatial-Temporal Data |
| magic | Create and Investigate Magic Squares |
| magicaxis | Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support |
| magicfor | Magic Functions to Obtain Results from for Loops |
| magick | Advanced Graphics and Image-Processing in R |
| magicLamp | 'WeMo Switch' Smart Plug Utilities |
| MAGNAMWAR | A Pipeline for Meta-Genome Wide Association |
| magree | Implements the O'Connell-Dobson-Schouten Estimators of Agreement for Multiple Observers |
| magrittr | A Forward-Pipe Operator for R |
| maGUI | A Graphical User Interface for Microarray Data Analysis and Annotation |
| Sending Email Notifications from R | |
| mailR | A Utility to Send Emails from R |
| MAINT.Data | Model and Analyse Interval Data |
| makedummies | Create Dummy Variables from Categorical Data |
| MakefileR | Create 'Makefiles' Using R |
| makeFlow | Visualizing Sequential Classifications |
| makeParallel | Transform Serial R Code into Parallel R Code |
| makeProject | Creates an empty package framework for the LCFD format |
| malani | Machine Learning Assisted Network Inference |
| malariaAtlas | An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project' |
| MALDIquant | Quantitative Analysis of Mass Spectrometry Data |
| MALDIquantForeign | Import/Export Routines for 'MALDIquant' |
| MALDIrppa | MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis |
| mallet | A wrapper around the Java machine learning tool MALLET |
| MAMS | Designing Multi-Arm Multi-Stage Studies |
| MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) Weights |
| managelocalrepo | Manage a CRAN-Style Local Repository |
| MANCIE | Matrix Analysis and Normalization by Concordant Information Enhancement |
| mandelbrot | Generates Views on the Mandelbrot Set |
| manet | Multiple Allocation Model for Actor-Event Networks |
| mangoTraining | Mango Solutions Training Datasets |
| Mangrove | Risk Prediction on Trees |
| manhattanly | Interactive Q-Q and Manhattan Plots Using 'plotly.js' |
| manifestoR | Access and Process Data and Documents of the Manifesto Project |
| ManifoldOptim | An R Interface to the 'ROPTLIB' Library for Riemannian Manifold Optimization |
| manipulate | Interactive Plots for RStudio |
| manipulateWidget | Add Even More Interactivity to Interactive Charts |
| ManlyMix | Manly Mixture Modeling and Model-Based Clustering |
| MANOVA.RM | Analysis of Multivariate Data and Repeated Measures Designs |
| ManyTests | Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007) |
| Map2NCBI | Mapping Markers to the Nearest Genomic Feature |
| MAPA | Multiple Aggregation Prediction Algorithm |
| mapdata | Extra Map Databases |
| mapdeck | Interactive Maps Using 'Mapbox GL JS' and 'Deck.gl' |
| mapedit | Interactive Editing of Spatial Data in R |
| mapfit | A Tool for PH/MAP Parameter Estimation |
| mapfuser | Construct Consensus Genetic Maps and Estimate Recombination Rates |
| MapGAM | Mapping Smoothed Effect Estimates from Individual-Level Data |
| MAPLES | Smoothed age profile estimation |
| mapmisc | Utilities for Producing Maps |
| mapplots | Data Visualisation on Maps |
| mapproj | Map Projections |
| mapr | Visualize Species Occurrence Data |
| mapReasy | Producing Administrative Boundary Map with Additional Features Embedded |
| maps | Draw Geographical Maps |
| mapsapi | 'sf'-Compatible Interface to 'Google Maps' APIs |
| mapsRinteractive | Local Adaptation and Evaluation of Digital Soil Maps |
| mapStats | Geographic Display of Survey Data Statistics |
| maptools | Tools for Handling Spatial Objects |
| maptpx | MAP Estimation of Topic Models |
| maptree | Mapping, pruning, and graphing tree models |
| mapview | Interactive Viewing of Spatial Data in R |
| mAr | Multivariate AutoRegressive analysis |
| MAR1 | Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data |
| mar1s | Multiplicative AR(1) with Seasonal Processes |
| march | Markov Chains |
| marcher | Migration and Range Change Estimation in R |
| marelac | Tools for Aquatic Sciences |
| MareyMap | Estimation of Meiotic Recombination Rates Using Marey Maps |
| marg | Approximate Marginal Inference for Regression-Scale Models |
| MargCond | Joint Marginal-Conditional Model |
| MarginalMediation | Marginal Mediation |
| margins | Marginal Effects for Model Objects |
| marima | Multivariate ARIMA and ARIMA-X Analysis |
| marinespeed | Benchmark Data Sets and Functions for Marine Species Distribution Modelling |
| markdown | 'Markdown' Rendering for R |
| marked | Mark-Recapture Analysis for Survival and Abundance Estimation |
| maRketSim | Market simulator for R |
| markmyassignment | Automatic Marking of R Assignments |
| markophylo | Markov Chain Models for Phylogenetic Trees |
| markovchain | Easy Handling Discrete Time Markov Chains |
| MarkowitzR | Statistical Significance of the Markowitz Portfolio |
| marl | Multivariate Analysis Based on Relative Likelihoods |
| marmap | Import, Plot and Analyze Bathymetric and Topographic Data |
| marqLevAlg | An algorithm for least-squares curve fitting |
| MARSS | Multivariate Autoregressive State-Space Modeling |
| MARX | Simulation, Estimation, Model Selection and Forecasting for MARX Models |
| maSAE | Mandallaz' Model-Assisted Small Area Estimators |
| mase | Model-Assisted Survey Estimators |
| MaskJointDensity | Masking, Unmasking and Restoring Confidential Data |
| mason | Build Data Structures for Common Statistical Analysis |
| MASS | Support Functions and Datasets for Venables and Ripley's MASS |
| Massign | Simple Matrix Construction |
| MASSTIMATE | Body Mass Estimation Equations for Vertebrates |
| MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |
| MAT | Multidimensional Adaptive Testing |
| MATA | Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval |
| matchbook | Wrapper for the 'Matchbook' API |
| Matching | Multivariate and Propensity Score Matching with Balance Optimization |
| MatchingFrontier | Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference |
| matchingMarkets | Analysis of Stable Matchings |
| matchingR | Matching Algorithms in R and C++ |
| MatchIt | Nonparametric Preprocessing for Parametric Causal Inference |
| MatchItSE | Calculates SE for Matched Samples from 'MatchIt' |
| MatchLinReg | Combining Matching and Linear Regression for Causal Inference |
| matchMulti | Optimal Multilevel Matching using a Network Algorithm |
| matconv | A Code Converter from the Matlab/Octave Language to R |
| mateable | Tools to Assess Mating Potential in Space and Time |
| mathpix | Support for the 'Mathpix' API (Image to 'LaTeX') |
| matie | Measuring Association and Testing Independence Efficiently |
| matlab | MATLAB emulation package |
| matlabr | An Interface for MATLAB using System Calls |
| matlib | Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics |
| MatManlyMix | Matrix Clustering with Gaussian and Manly Mixture Models |
| matpow | matrix powers |
| matR | Metagenomics Analysis Tools |
| Matrix | Sparse and Dense Matrix Classes and Methods |
| Matrix.utils | Data.frame-Like Operations on Sparse and Dense Matrix Objects |
| matrixcalc | Collection of functions for matrix calculations |
| MatrixCorrelation | Matrix Correlation Coefficients |
| MatrixEQTL | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
| matrixLaplacian | Normalized Laplacian Matrix and Laplacian Map |
| MatrixLDA | Penalized Matrix-Normal Linear Discriminant Analysis |
| MatrixModels | Modelling with Sparse And Dense Matrices |
| matrixpls | Matrix-Based Partial Least Squares Estimation |
| matrixProfile | Matrix Profile |
| matrixsampling | Simulations of Matrix Variate Distributions |
| matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) |
| matrixTests | Fast Statistical Hypothesis Tests on Rows and Columns of Matrices |
| MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |
| mau | Decision Models with Multi Attribute Utility Theory |
| MAVE | Methods for Dimension Reduction |
| MAVIS | Meta Analysis via Shiny |
| MAVTgsa | Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest |
| MaXact | Exact max-type Cochran-Armitage trend test(CATT) |
| maxadjAUC | Maximizing the Adjusted AUC |
| maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |
| MaxentVariableSelection | Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling |
| maximin | Sequential Space-Filling Design under the Criterion of Maximin Distance |
| maxLik | Maximum Likelihood Estimation and Related Tools |
| maxlike | Model Species Distributions by Estimating the Probability of Occurrence Using Presence-Only Data |
| maxmatching | Maximum Matching for General Weighted Graph |
| maxnet | Fitting 'Maxent' Species Distribution Models with 'glmnet' |
| MaxPro | Maximum Projection Designs |
| MaxSkew | Orthogonal Data Projections with Maximal Skewness |
| maxstat | Maximally Selected Rank Statistics |
| maxTPR | Maximizing the TPR for a Specified FPR |
| MazamaSpatialUtils | Spatial Data Download and Utility Functions |
| MazamaWebUtils | Utility Functions for Building Web Databrowsers |
| mazealls | Generate Recursive Mazes |
| mazeGen | Elithorn Maze Generator |
| mazeinda | Monotonic Association on Zero-Inflated Data |
| MBA | Multilevel B-Spline Approximation |
| mbbefd | Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling |
| MBC | Multivariate Bias Correction of Climate Model Outputs |
| MBCluster.Seq | Model-Based Clustering for RNA-seq Data |
| mbclusterwise | Clusterwise Multiblock Analyses |
| MBESS | The MBESS R Package |
| mbest | Moment-Based Estimation for Hierarchical Models |
| mbgraphic | Measure Based Graphic Selection |
| MBHdesign | Spatial Designs for Ecological and Environmental Surveys |
| MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |
| mbir | Magnitude-Based Inferences |
| mblm | Median-Based Linear Models |
| MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |
| mbmdr | Model Based Multifactor Dimensionality Reduction |
| mboost | Model-Based Boosting |
| mbrglm | Median Bias Reduction in Binomial-Response GLMs |
| MBSGS | Multivariate Bayesian Sparse Group Selection with Spike and Slab |
| MBSP | Multivariate Bayesian Model with Shrinkage Priors |
| mBvs | Bayesian Variable Selection Methods for Multivariate Data |
| mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |
| MC2toPath | Translates information from netcdf files with MC2 output into inter-PVT transitions |
| MCAvariants | Multiple Correspondence Analysis Variants |
| mcbiopi | Matrix Computation Based Identification of Prime Implicants |
| mcc | Moment Corrected Correlation |
| mcca | Multi-Category Classification Accuracy |
| mccf1 | Creates the MCC-F1 Curve and Calculates the MCC-F1 Metric and the Best Threshold |
| mcclust | Process an MCMC Sample of Clusterings |
| mccmeiv | Estimating Parameters for a Matched Case Control Design with a Mismeasured Exposure using Instrumental Variables |
| mccr | The Matthews Correlation Coefficient |
| MCDA | Functions to Support the Multicriteria Decision Aiding Process |
| MCDM | Multi-Criteria Decision Making Methods for Crisp Data |
| mcemGLM | Maximum Likelihood Estimation for Generalized Linear Mixed Models |
| mcen | Multivariate Cluster Elastic Net |
| mcga | Machine Coded Genetic Algorithms for Real-Valued Optimization Problems |
| mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |
| mcglm | Multivariate Covariance Generalized Linear Models |
| mcGlobaloptim | Global optimization using Monte Carlo and Quasi Monte Carlo simulation |
| mcheatmaps | Multiple matrices heatmap visualization |
| MCI | Multiplicative Competitive Interaction (MCI) Model |
| MCL | Markov Cluster Algorithm |
| mclcar | Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods |
| mcll | Monte Carlo Local Likelihood Estimation |
| mclogit | Mixed Conditional Logit Models |
| mclust | Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation |
| mclustcomp | Measures for Comparing Clusters |
| mcmc | Markov Chain Monte Carlo |
| MCMC.OTU | Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology |
| MCMC.qpcr | Bayesian Analysis of qRT-PCR Data |
| MCMC4Extremes | Posterior Distribution of Extreme Value Models in R |
| MCMCglmm | MCMC Generalised Linear Mixed Models |
| MCMCpack | Markov Chain Monte Carlo (MCMC) Package |
| mcmcplots | Create Plots from MCMC Output |
| MCMCprecision | Precision of Discrete Parameters in Transdimensional MCMC |
| mcmcr | Manipulate MCMC Samples |
| mcmcse | Monte Carlo Standard Errors for MCMC |
| MCMCvis | Tools to Visualize, Manipulate, and Summarize MCMC Output |
| mcMST | A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem |
| mco | Multiple Criteria Optimization Algorithms and Related Functions |
| Mcomp | Data from the M-Competitions |
| mcompanion | Objects and Methods for Multi-Companion Matrices |
| MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |
| mcPAFit | Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo |
| MCPAN | Multiple Comparisons Using Normal Approximation |
| mcparallelDo | A Simplified Interface for Running Commands on Parallel Processes |
| MCPerm | A Monte Carlo permutation method for multiple test correlation |
| MCPMod | Design and Analysis of Dose-Finding Studies |
| mcprofile | Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance |
| mcr | Method Comparison Regression |
| MCS | Model Confidence Set Procedure |
| MCSim | Determine the Optimal Number of Clusters |
| mcsm | Functions for Monte Carlo Methods with R |
| McSpatial | Nonparametric spatial data analysis |
| mctest | Multicollinearity Diagnostic Measures |
| MCTM | Markov Chains Transition Matrices |
| md | Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method |
| md.log | Produces Markdown Log File with a Built-in Function Call |
| mda | Mixture and Flexible Discriminant Analysis |
| mdatools | Multivariate Data Analysis for Chemometrics |
| mded | Measuring the Difference Between Two Empirical Distributions |
| mdendro | Variable-Group Methods for Agglomerative Hierarchical Clustering |
| MDFS | MultiDimensional Feature Selection |
| mdftracks | Read and Write 'MTrackJ Data Files' |
| MDimNormn | Multi-Dimensional MA Normalization for Plate Effect |
| mdir.logrank | Multiple-Direction Logrank Test |
| MDM | Multinomial Diversity Model |
| mdmb | Model Based Treatment of Missing Data |
| MDMR | Multivariate Distance Matrix Regression |
| mdpeer | Graph-Constrained Regression with Enhanced Regularization Parameters Selection |
| MDplot | Visualising Molecular Dynamics Analyses |
| MDPtoolbox | Markov Decision Processes Toolbox |
| mds | Medical Devices Surveillance |
| mdscore | Improved Score Tests for Generalized Linear Models |
| mdsdt | Functions for Analysis of Data with General Recognition Theory |
| MDSGUI | A GUI for interactive MDS in R |
| MDSMap | High Density Genetic Linkage Mapping using Multidimensional Scaling |
| mdsOpt | Searching for Optimal MDS Procedure for Metric and Interval-Valued Symbolic Data |
| mdsr | Complement to 'Modern Data Science with R' |
| mdsstat | Statistical Trending for Medical Devices Surveillance |
| mdw | Maximum Diversity Weighting |
| meanr | Sentiment Analysis Scorer |
| MeanShift | Clustering via the Mean Shift Algorithm |
| meanShiftR | A Computationally Efficient Mean Shift Implementation |
| meaRtools | Micro-Electro Array (MEA) Analysis |
| measurements | Tools for Units of Measurement |
| measures | Performance Measures for Statistical Learning |
| measuRing | Detection and Control of Tree-Ring Widths on Scanned Image Sections |
| meboot | Maximum Entropy Bootstrap for Time Series |
| MEclustnet | Fitting the Mixture of Experts Latent Position Cluster Model to Network Data |
| MED | Mediation by Tilted Balancing |
| MedDietCalc | Multi Calculator to Compute Scores of Adherence to Mediterranean Diet |
| mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |
| medfate | Mediterranean Forest Simulation |
| medflex | Flexible Mediation Analysis Using Natural Effect Models |
| MediaK | Calculate MeDiA_K Distance |
| Mediana | Clinical Trial Simulations |
| mediation | Causal Mediation Analysis |
| medicalrisk | Medical Risk and Comorbidity Tools for ICD-9-CM Data |
| medicare | Tools for Obtaining and Cleaning Medicare Public Use Files |
| medmod | Simple Mediation and Moderation Analysis |
| MedOr | Median Ordering Statistical R package |
| MEET | MEET: Motif Elements Estimation Toolkit |
| meetupapi | Access 'Meetup' API |
| mefa | Multivariate Data Handling in Ecology and Biogeography |
| mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |
| Mega2R | Accessing and Processing a 'Mega2' Genetic Database |
| MEGENA | Multiscale Clustering of Geometrical Network |
| meifly | Interactive model exploration using GGobi |
| mekko | Variable Width Bar Charts: Bar Mekko |
| meltt | Matching Event Data by Location, Time and Type |
| melviewr | View and Classify MELODIC Output for ICA+FIX |
| mem | The Moving Epidemic Method |
| memapp | The Moving Epidemic Method Web Application |
| meme | Create Meme |
| memery | Internet Memes for Data Analysts |
| memgene | Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps |
| memisc | Management of Survey Data and Presentation of Analysis Results |
| memo | In-Memory Caching for Repeated Computations |
| memoise | Memoisation of Functions |
| memor | A 'rmarkdown' Template that Can be Highly Customized |
| MEMSS | Data sets from Mixed-effects Models in S |
| memuse | Memory Estimation Utilities |
| MendelianRandomization | Mendelian Randomization Package |
| MenuCollection | Collection of Configurable GTK+ Menus |
| MEPDF | Creation of Empirical Density Functions Based on Multivariate Data |
| merDeriv | Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models |
| MergeGUI | A GUI for Merging Datasets in R |
| merlin | Mixed Effects Regression for Linear, Non-Linear and User-Defined Models |
| merror | Accuracy and Precision of Measurements |
| merTools | Tools for Analyzing Mixed Effect Regression Models |
| MESS | Miscellaneous Esoteric Statistical Scripts |
| messaging | Conveniently Issue Messages, Warnings, and Errors |
| meta | General Package for Meta-Analysis |
| meta4diag | Meta-Analysis for Diagnostic Test Studies |
| MetaAnalyser | An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine |
| MetABEL | Meta-analysis of genome-wide SNP association results |
| metaBLUE | BLUE for Combining Location and Scale Information in a Meta-Analysis |
| metaBMA | Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis |
| metaboGSE | Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data |
| MetabolAnalyze | Probabilistic latent variable models for metabolomic data |
| MetaboList | Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data |
| metabolomics | Analysis of Metabolomics Data |
| MetabolomicsBasics | Basic Functions to Investigate Metabolomics Data Matrices |
| MetaboQC | Normalize Metabolomic Data using QC Signal |
| metacart | Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis |
| metacoder | Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data |
| metacom | Analysis of the 'Elements of Metacommunity Structure' |
| MetaComp | EDGE Taxonomy Assignments Visualization |
| metacor | Meta-analysis of correlation coefficients |
| MetaCycle | Evaluate Periodicity in Large Scale Data |
| metaDigitise | Extract and Summarise Data from Published Figures |
| metadynminer | Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed' |
| metafolio | Metapopulation simulations for conserving salmon through portfolio optimization |
| metafor | Meta-Analysis Package for R |
| metaforest | Exploring Heterogeneity in Meta-Analysis using Random Forests |
| metafuse | Fused Lasso Approach in Regression Coefficient Clustering |
| metagear | Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis |
| metagen | Inference in Meta Analysis and Meta Regression |
| metaheur | Metaheuristic Optimization Framework for Preprocessing Combinations |
| MetaheuristicFPA | An Implementation of Flower Pollination Algorithm in R |
| metaheuristicOpt | Metaheuristic for Optimization |
| MetaIntegrator | Meta-Analysis of Gene Expression Data |
| MetaLandSim | Landscape and Range Expansion Simulation |
| metaLik | Likelihood Inference in Meta-Analysis and Meta-Regression Models |
| MetaLonDA | Metagenomics Longitudinal Differential Abundance Method |
| metaMA | Meta-analysis for MicroArrays |
| MetamapsDB | Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics |
| metamedian | Meta-Analysis of Medians |
| metamisc | Diagnostic and Prognostic Meta-Analysis |
| metaMix | Bayesian Mixture Analysis for Metagenomic Community Profiling |
| metansue | Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects |
| metap | Meta-Analysis of Significance Values |
| MetaPath | Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE) |
| MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |
| metaplot | Data-Driven Plot Design |
| metaplotr | Creates CrossHairs Plots for Meta-Analyses |
| metaplus | Robust Meta-Analysis and Meta-Regression |
| MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis |
| metaRNASeq | Meta-analysis of RNA-seq data |
| metaSEM | Meta-Analysis using Structural Equation Modeling |
| metasens | Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis |
| MetaSKAT | Meta Analysis for SNP-Set (Sequence) Kernel Association Test |
| MetaStan | Bayesian Meta-Analysis via 'Stan' |
| MetaSubtract | Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results |
| metatest | Fit and test metaregression models |
| Metatron | Meta-analysis for Classification Data and Correction to Imperfect Reference |
| metavcov | Variance-Covariance Matrix for Multivariate Meta-Analysis |
| metaviz | Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis |
| meteo | Spatio-Temporal Analysis and Mapping of Meteorological Observations |
| meteoForecast | Numerical Weather Predictions |
| meteogRam | Tools for plotting meteograms |
| meteoland | Landscape Meteorology Tools |
| meteR | Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE) |
| MetFns | Analysis of Visual Meteor Data |
| Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |
| MethComp | Functions for Analysis of Agreement in Method Comparison Studies |
| MethodCompare | Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors |
| Methplot | Visualize the methylation patterns |
| MethylCapSig | Detection of Differentially Methylated Regions using MethylCap-Seq Data |
| MetNorm | Statistical Methods for Normalizing Metabolomics Data |
| MetProc | Separate Metabolites into Likely Measurement Artifacts and True Metabolites |
| Metrics | Evaluation Metrics for Machine Learning |
| metricsgraphics | Create Interactive Charts with the JavaScript 'MetricsGraphics' Library |
| metricTester | Test Metric and Null Model Statistical Performance |
| metRology | Support for Metrological Applications |
| mets | Analysis of Multivariate Event Times |
| metScanR | Find, Map, and Gather Environmental Data and Metadata |
| MetSizeR | GUI Tool for Estimating Sample Sizes for Metabolomic Experiments |
| MetStaT | Statistical metabolomics tools |
| mev | Multivariate Extreme Value Distributions |
| mewAvg | A Fixed Memeory Moving Expanding Window Average |
| mexhaz | Mixed Effect Excess Hazard Models |
| mExplorer | Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data |
| MExPosition | Multi-table ExPosition |
| MF | Mitigated Fraction |
| MFAg | Multiple Factor Analysis (MFA) |
| MFDFA | MultiFractal Detrended Fluctuation Analysis |
| mfe | Meta-Feature Extractor |
| mfGARCH | Mixed-Frequency GARCH Models |
| MFHD | Multivariate Functional Halfspace Depth |
| mFilter | Miscellaneous Time Series Filters |
| MFKnockoffs | Model-Free Knockoff Filter for Controlled Variable Selection |
| mfp | Multivariable Fractional Polynomials |
| MFPCA | Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains |
| MFT | The Multiple Filter Test for Change Point Detection |
| MfUSampler | Multivariate-from-Univariate (MfU) MCMC Sampler |
| mfx | Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs |
| mgarchBEKK | Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes |
| mgc | Multiscale Graph Correlation |
| mgcv | Mixed GAM Computation Vehicle with Automatic Smoothness Estimation |
| mgcViz | Visualisations for Generalized Additive Models |
| MGL | Module Graphical Lasso |
| MGLM | Multivariate Response Generalized Linear Models |
| mglmn | Model Averaging for Multivariate GLM with Null Models |
| mglR | Master Gene List |
| mgm | Estimating Time-Varying k-Order Mixed Graphical Models |
| mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |
| mgraph | Graphing map attributes and non-map variables in R |
| MGRASTer | API Client for the MG-RAST Server of the US DOE KBase |
| MGSDA | Multi-Group Sparse Discriminant Analysis |
| mgsub | Safe, Multiple, Simultaneous String Substitution |
| mGSZ | Gene set analysis based on GSZ-scoring function and asymptotic p-value |
| mgwrsar | GWR and MGWR with Spatial Autocorrelation |
| MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |
| MHCtools | Analysis of MHC Data in Non-Model Species |
| mhde | Minimum Hellinger Distance Test for Normality |
| mHG | Minimum-Hypergeometric Test |
| mhsmm | Inference for Hidden Markov and Semi-Markov Models |
| mht | Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models |
| mhtboot | Multiple Hypothesis Test Based on Distribution of p Values |
| MHTcop | Tests Controlling the FDR / FWER under Certain Copula Models |
| MHTdiscrete | Multiple Hypotheses Testing for Discrete Data |
| MHTmult | Multiple Hypotheses Testing for Multiple Families/Groups Structure |
| MHTrajectoryR | Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions |
| mhurdle | Multiple Hurdle Tobit Models |
| mi | Missing Data Imputation and Model Checking |
| MIAmaxent | Maxent Distribution Model Selection |
| mice | Multivariate Imputation by Chained Equations |
| miceadds | Some Additional Multiple Imputation Functions, Especially for 'mice' |
| micEcon | Microeconomic Analysis and Modelling |
| micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |
| micEconCES | Analysis with the Constant Elasticity of Substitution (CES) function |
| micEconIndex | Price and Quantity Indices |
| micEconSNQP | Symmetric Normalized Quadratic Profit Function |
| miceExt | Extension Package to 'mice' |
| miceFast | Fast Imputations Using 'Rcpp' and 'Armadillo' |
| micemd | Multiple Imputation by Chained Equations with Multilevel Data |
| miceMNAR | Missing not at Random Imputation Models for Multiple Imputation by Chained Equation |
| micompr | Multivariate Independent Comparison of Observations |
| miCoPTCM | Promotion Time Cure Model with Mis-Measured Covariates |
| microbats | An Implementation of Bat Algorithm in R |
| microbenchmark | Accurate Timing Functions |
| microclass | Methods for Taxonomic Classification of Prokaryotes |
| microcontax | The ConTax Data Package |
| MicroDatosEs | Utilities for Official Spanish Microdata |
| microdemic | 'Microsoft Academic' API Client |
| MicroMacroMultilevel | Micro-Macro Multilevel Modeling |
| micromap | Linked Micromap Plots |
| micromapST | Linked Micromap Plots for General U. S. and Other Geographic Areas |
| micropan | Microbial Pan-Genome Analysis |
| microplot | Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel' |
| microPop | Modelling Microbial Populations |
| microsamplingDesign | Finding Optimal Microsampling Designs for Non-Compartmental Pharmacokinetic Analysis |
| microseq | Basic Biological Sequence Handling |
| MicroStrategyR | MicroStrategyR Package |
| microsynth | Synthetic Control Methods with Micro- And Meso-Level Data |
| MicSim | Performing Continuous-Time Microsimulation |
| midas | Turn HTML 'Shiny' |
| midasr | Mixed Data Sampling Regression |
| midastouch | Multiple Imputation by Distance Aided Donor Selection |
| MIDN | Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions |
| midrangeMCP | Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions |
| MigClim | Implementing dispersal into species distribution models |
| migest | Methods for the Indirect Estimation of Bilateral Migration |
| migration.indices | Migration indices |
| migui | Graphical User Interface to the 'mi' Package |
| miic | Learning Causal or Non-Causal Graphical Models Using Information Theory |
| MIICD | Multiple Imputation for Interval Censored Data |
| MIIVsem | Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models |
| MILC | MIcrosimulation Lung Cancer (MILC) model |
| miLineage | Association Tests for Microbial Lineages on a Taxonomic Tree |
| milr | Multiple-Instance Logistic Regression with LASSO Penalty |
| mime | Map Filenames to MIME Types |
| MImix | Mixture summary method for multiple imputation |
| MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |
| mindr | Convert Files Between Markdown or Rmarkdown Files and Mindmaps |
| mineCitrus | Extract and Analyze Median Molecule Intensity from 'citrus' Output |
| minerva | Maximal Information-Based Nonparametric Exploration for Variable Analysis |
| Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |
| miniCRAN | Create a Mini Version of CRAN Containing Only Selected Packages |
| miniGUI | Tcl/Tk Quick and Simple Function GUI |
| minimalRSD | Minimally Changed CCD and BBD |
| minimap | Create Tile Grid Maps |
| minimax | Minimax distribution family |
| minimaxdesign | Minimax and Minimax Projection Designs |
| minimist | Parse Argument Options |
| Minirand | Minimization Randomization |
| miniUI | Shiny UI Widgets for Small Screens |
| minpack.lm | R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds |
| minPtest | Gene region-level testing procedure for SNP data, using the min P test resampling approach |
| minqa | Derivative-free optimization algorithms by quadratic approximation |
| minque | An R Package for Linear Mixed Model Analyses |
| MInt | Learn Direct Interaction Networks |
| minval | MINimal VALidation for Stoichiometric Reactions |
| minxent | Entropy Optimization Distributions |
| mipfp | Multidimensional Iterative Proportional Fitting and Alternative Models |
| MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |
| miRada | MicroRNA Microarray Data Analysis |
| MiRAnorm | Adaptive Normalization for miRNA Data |
| MiRKAT | Microbiome Regression-Based Kernel Association Test |
| MIRL | Multiple Imputation Random Lasso for Variable Selection with Missing Entries |
| miRNAss | Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples |
| MiRSEA | 'MicroRNA' Set Enrichment Analysis |
| mirt | Multidimensional Item Response Theory |
| mirtCAT | Computerized Adaptive Testing with Multidimensional Item Response Theory |
| miRtest | combined miRNA- and mRNA-testing |
| misc3d | Miscellaneous 3D Plots |
| miscF | Miscellaneous Functions |
| miscFuncs | Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools |
| misclassGLM | Computation of Generalized Linear Models with Misclassified Covariates Using Side Information |
| miscor | Miscellaneous Functions for the Correlation Coefficient |
| miscset | Miscellaneous Tools Set |
| miscTools | Miscellaneous Tools and Utilities |
| mise | Clears the Workspace (Mise en Place) |
| Miso | Multi-Isotope Labeling for Metabolomics Analysis |
| mispr | Multiple Imputation with Sequential Penalized Regression |
| MiSPU | Microbiome Based Sum of Powered Score (MiSPU) Tests |
| misreport | Statistical Analysis of Misreporting on Sensitive Survey Questions |
| missDeaths | Simulating and Analyzing Time to Event Data in the Presence of Population Mortality |
| missForest | Nonparametric Missing Value Imputation using Random Forest |
| MissingDataGUI | A GUI for Missing Data Exploration |
| missMDA | Handling Missing Values with Multivariate Data Analysis |
| MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |
| missRanger | Fast Imputation of Missing Values |
| MiST | Mixed effects Score Test for continuous outcomes |
| mistat | Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti |
| mistral | Methods in Structural Reliability Analysis |
| MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |
| mitml | Tools for Multiple Imputation in Multilevel Modeling |
| mitools | Tools for multiple imputation of missing data |
| MittagLeffleR | Mittag-Leffler Family of Distributions |
| mix | Estimation/Multiple Imputation for Mixed Categorical and Continuous Data |
| mixAK | Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering |
| MixAll | Clustering and Classification using Model-Based Mixture Models |
| mixchar | Mixture Model for the Deconvolution of Thermal Decay Curves |
| mixdir | Cluster High Dimensional Categorical Datasets |
| mixdist | Finite Mixture Distribution Models |
| MixedDataImpute | Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models |
| mixedMem | Tools for Discrete Multivariate Mixed Membership Models |
| MixedPoisson | Mixed Poisson Models |
| MixedPsy | Statistical Tools for the Analysis of Psychophysical Data |
| mixedsde | Estimation Methods for Stochastic Differential Mixed Effects Models |
| MixedTS | Mixed Tempered Stable Distribution |
| mixEMM | A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable Missing Data |
| mixexp | Design and Analysis of Mixture Experiments |
| MIXFIM | Evaluation of the FIM in NLMEMs using MCMC |
| MixfMRI | Mixture fMRI Clustering Analysis |
| MixGHD | Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions |
| mixKernel | Omics Data Integration Using Kernel Methods |
| mixlink | Mixture Link Regression |
| mixlm | Mixed Model ANOVA and Statistics for Education |
| MixMAP | Implements the MixMAP Algorithm |
| mixOmics | Omics Data Integration Project |
| mixor | Mixed-Effects Ordinal Regression Analysis |
| mixpack | Tools to Work with Mixture Components |
| mixPHM | Mixtures of Proportional Hazard Models |
| mixR | Finite Mixture Modeling for Raw and Binned Data |
| mixRasch | Mixture Rasch Models with JMLE |
| mixreg | Functions to Fit Mixtures of Regressions |
| MixRF | A Random-Forest-Based Approach for Imputing Clustered Incomplete Data |
| MixSAL | Mixtures of Multivariate Shifted Asymmetric Laplace (SAL) Distributions |
| mixsep | Forensic Genetics DNA Mixture Separation |
| MixSIAR | Bayesian Mixing Models in R |
| MixSim | Simulating Data to Study Performance of Clustering Algorithms |
| mixsmsn | Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions |
| mixtNB | DE Analysis of RNA-Seq Data by Mixtures of NB |
| mixtools | Tools for Analyzing Finite Mixture Models |
| mixtox | Curve Fitting and Mixture Toxicity Assessment |
| mixture | Finite Gaussian Mixture Models for Clustering and Classification |
| MixtureInf | Inference for Finite Mixture Models |
| MixtureRegLTIC | Mixture Regression Models for Left-Truncated and Interval-Censored Data |
| mize | Unconstrained Numerical Optimization Algorithms |
| mizer | Multi-Species sIZE Spectrum Modelling in R |
| mkde | 2D and 3D movement-based kernel density estimates (MKDEs) |
| mkin | Kinetic Evaluation of Chemical Degradation Data |
| MKLE | Maximum kernel likelihood estimation |
| MKmisc | Miscellaneous Functions from M. Kohl |
| mknapsack | Multiple Knapsack Problem Solver |
| mkssd | Efficient multi-level k-circulant supersaturated designs |
| ML.MSBD | Maximum Likelihood Inference on Multi-State Trees |
| mlapi | Abstract Classes for Building 'scikit-learn' Like API |
| MlBayesOpt | Hyper Parameter Tuning for Machine Learning, Using Bayesian Optimization |
| mlbench | Machine Learning Benchmark Problems |
| mlbgameday | Tools to Gather Data from Major League Baseball Advanced Media (MLBAM) |
| mlbstats | Major League Baseball Player Statistics Calculator |
| MLCIRTwithin | Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality |
| mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |
| mldr | Exploratory Data Analysis and Manipulation of Multi-Label Data Sets |
| mldr.datasets | R Ultimate Multilabel Dataset Repository |
| MLDS | Maximum Likelihood Difference Scaling |
| mle.tools | Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s) |
| mleap | Interface to 'MLeap' |
| mlearning | Machine learning algorithms with unified interface and confusion matrices |
| MLEcens | Computation of the MLE for bivariate (interval) censored data |
| mlegp | Maximum Likelihood Estimates of Gaussian Processes |
| mleur | Maximum likelihood unit root test |
| mlf | Machine Learning Foundations |
| mlflow | Interface to 'MLflow' |
| MLGL | Multi-Layer Group-Lasso |
| mlgt | Multi-Locus Geno-Typing |
| mlica2 | Independent Component Analysis using Maximum Likelihood |
| MLID | Multilevel Index of Dissimilarity |
| mljar | R API for MLJAR |
| mlma | Multilevel Mediation Analysis |
| mlmc | Multi-Level Monte Carlo |
| MLmetrics | Machine Learning Evaluation Metrics |
| MLML2R | Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions |
| mlmm.gwas | Pipeline for GWAS Using MLMM |
| mlmmm | ML estimation under multivariate linear mixed models with missing values |
| mlmRev | Examples from Multilevel Modelling Software Review |
| mlogit | Multinomial Logit Models |
| mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |
| mlPhaser | Multi-Locus Haplotype Phasing |
| MLPUGS | Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains) |
| mlr | Machine Learning in R |
| mlrCPO | Composable Preprocessing Operators and Pipelines for Machine Learning |
| mlrMBO | Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions |
| mlsjunkgen | Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers |
| mlt | Most Likely Transformations |
| mlt.docreg | Most Likely Transformations: Documentation and Regression Tests |
| mltools | Machine Learning Tools |
| mlVAR | Multi-Level Vector Autoregression |
| mlxR | Simulation of Longitudinal Data |
| MLZ | Mean Length-Based Estimators of Mortality using TMB |
| MM | The Multiplicative Multinomial Distribution |
| MM2S | Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines |
| MM2Sdata | Gene Expression Datasets for the 'MM2S' Package |
| MM4LMM | Inference of Linear Mixed Models Through MM Algorithm |
| mma | Multiple Mediation Analysis |
| mmabig | Multiple Mediation Analysis for Big Data Sets |
| MMAC | Data for Mathematical Modeling and Applied Calculus |
| mmand | Mathematical Morphology in Any Number of Dimensions |
| mmap | Map Pages of Memory |
| mmapcharr | Memory-Map Character Files |
| mmc | Multivariate Measurement Error Correction |
| mmcm | Modified Maximum Contrast Method |
| MMDai | Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data |
| mmds | Mixture Model Distance Sampling (mmds) |
| MMDvariance | Detecting Differentially Variable Genes Using the Mixture of Marginal Distributions |
| mmeln | Estimation of Multinormal Mixture Distribution |
| mmeta | Multivariate Meta-Analysis |
| MmgraphR | Graphing for Markov, Hidden Markov, and Mixture Transition Distribution Models |
| mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |
| mmm2 | Multivariate marginal models with shared regression parameters |
| mmmgee | Simultaneous Inference for Multiple Linear Contrasts in GEE Models |
| MMMS | Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification |
| mmod | Modern Measures of Population Differentiation |
| mMPA | Implementation of Marker-Assisted Mini-Pooling with Algorithm |
| mmpf | Monte-Carlo Methods for Prediction Functions |
| mmpp | Various Similarity and Distance Metrics for Marked Point Processes |
| mmppr | Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts |
| MMPPsampler | Efficient Gibbs-Sampler for Markov-Modulated-Poisson-Processes |
| MMS | Fixed Effects Selection in Linear Mixed Models |
| mmtfa | Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers |
| mmtsne | Multiple Maps t-SNE |
| MMWRweek | Convert Dates to MMWR Day, Week, and Year |
| mnis | Easy Downloading Capabilities for the Members' Name Information Service |
| mnlogit | Multinomial Logit Model |
| MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |
| mnormpow | Multivariate Normal Distributions with Power Integrand |
| mnormt | The Multivariate Normal and t Distributions |
| MNP | R Package for Fitting the Multinomial Probit Model |
| mnreadR | MNREAD Parameters Estimation and Curve Plotting |
| MNS | Mixed Neighbourhood Selection |
| mobForest | Model Based Random Forest Analysis |
| Mobilize | Mobilize plots and functions |
| mobsim | Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes |
| MOCCA | Multi-Objective Optimization for Collecting Cluster Alternatives |
| mockery | Mocking Library for R |
| mockr | Mocking in R |
| mod09nrt | Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT |
| modcmfitr | Fit a Modified Connor-Mosimann Distribution to Elicited Quantiles in Multinomial Problems |
| modeest | Mode Estimation |
| modehunt | Multiscale Analysis for Density Functions |
| model4you | Stratified and Personalised Models Based on Model-Based Trees and Forests |
| Modelcharts | Classification Model Charts |
| modeldb | Fits Models Inside the Database |
| Modeler | Classes and Methods for Training and Using Binary Prediction Models |
| modelfree | Model-free estimation of a psychometric function |
| ModelGood | Validation of risk prediction models |
| modelgrid | A Framework for Creating, Managing and Training Multiple Caret Models |
| ModelMap | Modeling and Map Production using Random Forest and Related Stochastic Models |
| ModelMetrics | Rapid Calculation of Model Metrics |
| modelObj | A Model Object Framework for Regression Analysis |
| modelr | Modelling Functions that Work with the Pipe |
| modeltools | Tools and Classes for Statistical Models |
| modelwordcloud | Model Word Clouds |
| moderndive | Tidyverse-Friendly Introductory Linear Regression |
| modes | Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets |
| modest | Model-Based Dose-Escalation Trials |
| modEvA | Model Evaluation and Analysis |
| modifiedmk | Modified Mann Kendall Trend Tests |
| MODIS | Acquisition and Processing of MODIS Products |
| modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |
| MODISSnow | Provides a Function to Download MODIS Snow Cover |
| MODISTools | Interface to the 'MODIS Land Products Subsets' Web Services |
| MODIStsp | A Tool for Automating Download and Preprocessing of MODIS Land Products Data |
| modmarg | Calculating Marginal Effects and Levels with Errors |
| modMax | Community Structure Detection via Modularity Maximization |
| modopt.matlab | 'MatLab'-Style Modeling of Optimization Problems |
| modQR | Multiple-Output Directional Quantile Regression |
| modTempEff | Modelling temperature effects using time series data |
| modTurPoint | Estimate ED50 Based on Modified Turning Point Method |
| moduleColor | Basic Module Functions |
| modules | Self Contained Units of Source Code |
| modygliani | MOlecular DYnamics GLobal ANalysis |
| MOEADr | Component-Wise MOEA/D Implementation |
| MoEClust | Gaussian Parsimonious Clustering Models with Covariates |
| moezipfR | Marshall-Olkin Extended Zipf |
| mogavs | Multiobjective Genetic Algorithm for Variable Selection in Regression |
| MOJOV | Mojo Variants: Rare Variants analysis |
| mokken | Conducts Mokken Scale Analysis |
| moko | Multi-Objective Kriging Optimization |
| molaR | Dental Surface Complexity Measurement Tools |
| MoLE | Modeling Language Evolution |
| MOLHD | Multiple Objective Latin Hypercube Design |
| mombf | Moment and Inverse Moment Bayes Factors |
| momentchi2 | Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables |
| moments | Moments, cumulants, skewness, kurtosis and related tests |
| momentuHMM | Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models |
| Momocs | Morphometrics using R |
| momr | Mining Metaomics Data (MetaOMineR) |
| MomTrunc | Moments of Folded and Doubly Truncated Multivariate Distributions |
| mondate | Keep track of dates in terms of months |
| Mondrian | A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events |
| MonetDB.R | Connect MonetDB to R |
| MonetDBLite | In-Process Version of 'MonetDB' |
| mongolite | Fast and Simple 'MongoDB' Client for R |
| monitoR | Acoustic Template Detection in R |
| monkeylearn | Accesses the Monkeylearn API for Text Classifiers and Extractors |
| monmlp | Multi-Layer Perceptron Neural Network with Optional Monotonicity Constraints |
| monographaR | Taxonomic Monographs Tools |
| MonoInc | Monotonic Increasing |
| monomvn | Estimation for Multivariate Normal and Student-t Data with Monotone Missingness |
| MonoPhy | Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny |
| MonoPoly | Functions to Fit Monotone Polynomials |
| monoreg | Bayesian Monotonic Regression Using a Marked Point Process Construction |
| monotonicity | Test for Monotonicity in Expected Asset Returns, Sorted by Portfolios |
| monreg | Nonparametric Monotone Regression |
| MonteCarlo | Automatic Parallelized Monte Carlo Simulations |
| moonBook | Functions and Datasets for the Book by Keon-Woong Moon |
| moonsun | Basic astronomical calculations with R |
| mopa | Species Distribution MOdeling with Pseudo-Absences |
| mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |
| MOQA | Basic Quality Data Assurance for Epidemiological Research |
| MOrder | Check Time Homogeneity and Markov Chain Order |
| morgenstemning | Color schemes compatible with red-green color perception difficulties |
| morpheus | Estimate Parameters of Mixtures of Logistic Regressions |
| Morpho | Calculations and Visualisations Related to Geometric Morphometrics |
| morse | Modelling Tools for Reproduction and Survival Data in Ecotoxicology |
| MorseGen | Simple raw data generator based on user-specified summary statistics |
| mortAAR | Analysis of Archaeological Mortality Data |
| MortalityGaps | The Double-Gap Life Expectancy Forecasting Model |
| MortalityLaws | Parametric Mortality Models, Life Tables and HMD |
| MortalitySmooth | Smoothing and Forecasting Poisson Counts with P-Splines |
| MortalityTables | A Framework for Various Types of Mortality / Life Tables |
| MortCast | Estimation and Projection of Age-Specific Mortality Rates |
| mosaic | Project MOSAIC Statistics and Mathematics Teaching Utilities |
| mosaicCalc | Function-Based Numerical and Symbolic Differentiation and Antidifferentiation |
| mosaicCore | Common Utilities for Other MOSAIC-Family Packages |
| mosaicData | Project MOSAIC Data Sets |
| mosaicModel | An Interface to Statistical Modeling Independent of Model Architecture |
| MOST | Multiphase Optimization Strategy |
| mosum | Moving Sum Based Procedures for Changes in the Mean |
| MoTBFs | Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions |
| MotilityLab | Quantitative Analysis of Motion |
| motmot.2.0 | Models of Trait Macroevolution on Trees |
| moult | Models for Analysing Moult in Birds |
| mountainplot | Mountain Plots, Folded Empirical Cumulative Distribution Plots |
| mousetrack | Mouse-Tracking Measures from Trajectory Data |
| mousetrap | Process and Analyze Mouse-Tracking Data |
| move | Visualizing and Analyzing Animal Track Data |
| movecost | Calculation of Accumulated Cost Surface and Least-Cost Paths Related to Human Movement Across the Landscape |
| moveHMM | Animal Movement Modelling using Hidden Markov Models |
| moveVis | Movement Data Visualization |
| moveWindSpeed | Estimate Wind Speeds from Bird Trajectories |
| movMF | Mixtures of von Mises-Fisher Distributions |
| mozzie | Weekly Notified Dengue Cases in Sri Lanka |
| mp | Multidimensional Projection Techniques |
| mpa | CoWords Method |
| mpath | Regularized Linear Models |
| mpbart | Multinomial Probit Bayesian Additive Regression Trees |
| MPCI | Multivariate Process Capability Indices (MPCI) |
| mpcv | Multivariate Process Capability Vector |
| MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |
| mpe | Multiple Primary Endpoints |
| MPINet | The package can implement the network-based metabolite pathway identification of pathways |
| MPkn | Calculations of One Discrete Model in Several Time Steps |
| MPLikelihoodWB | Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters |
| mplot | Graphical Model Stability and Variable Selection Procedures |
| MplusAutomation | An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus |
| mpm | Multivariate Projection Methods |
| mpmcorrelogram | Multivariate Partial Mantel Correlogram |
| mpmi | Mixed-Pair Mutual Information Estimators |
| MPN | Most Probable Number for Serial Dilutions |
| mpoly | Symbolic Computation and More with Multivariate Polynomials |
| mppa | Statistics for analysing multiple simultaneous point processes on the real line |
| mppR | Multi-Parent Population QTL Analysis |
| mpr | Multi-Parameter Regression (MPR) |
| MPR.genotyping | Maximum Parsimony of Recombination to Infer Parental Genotypes |
| MPS | Estimating Through the Maximum Product Spacing Approach |
| MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |
| MPsychoR | Modern Psychometrics with R |
| mpt | Multinomial Processing Tree Models |
| MPTinR | Analyze Multinomial Processing Tree Models |
| mptools | RAMAS Metapop Tools |
| MPV | Data Sets from Montgomery, Peck and Vining |
| Mqrcm | M-Quantile Regression Coefficients Modeling |
| mQTL | Metabolomic Quantitative Trait Locus Mapping |
| mr.raps | Two Sample Mendelian Randomization using Robust Adjusted Profile Score |
| mra | Mark-Recapture Analysis |
| mratios | Ratios of Coefficients in the General Linear Model |
| mrbsizeR | Scale Space Multiresolution Analysis of Random Signals |
| MRCE | Multivariate Regression with Covariance Estimation |
| mRchmadness | Numerical Tools for Filling Out an NCAA Basketball Tournament Bracket |
| MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |
| mrds | Mark-Recapture Distance Sampling |
| mreg | Fits regression models when the outcome is partially missing |
| mregions | Marine Regions Data from 'Marineregions.org' |
| MRFA | Fitting and Predicting Large-Scale Nonlinear Regression Problems using Multi-Resolution Functional ANOVA (MRFA) Approach |
| MRFcov | Markov Random Fields with Additional Covariates |
| mrfDepth | Depth Measures in Multivariate, Regression and Functional Settings |
| mrgsolve | Simulate from ODE-Based Population PK/PD and Systems Pharmacology Models |
| MRH | Multi-Resolution Estimation of the Hazard Rate |
| MRHawkes | Multivariate Renewal Hawkes Process |
| mri | Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2) |
| mritc | MRI Tissue Classification |
| mRm | An R Package for Conditional Maximum Likelihood Estimation in Mixed Rasch Models |
| mrMLM | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |
| mrMLM.GUI | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |
| MRMR | Multivariate Regression Models for Reserving |
| mRMRe | Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection |
| mro | Multiple Correlation |
| MRPC | Mendelian Randomization (MR) Based PC Algorithm |
| MRQoL | Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life |
| MRS | Multi-Resolution Scanning for Cross-Sample Differences |
| MRSP | Multinomial Response Models with Structured Penalties |
| MRsurv | A multiplicative-regression model for relative survival |
| MRTSampleSize | A Sample Size Calculator for Micro-Randomized Trials |
| MRwarping | Multiresolution time warping for functional data |
| ms.sev | Package for Calculation of ARMSS, Local MSSS and Global MSSS |
| msaenet | Multi-Step Adaptive Estimation Methods for Sparse Regressions |
| msaFACE | Moving Subset Analysis FACE |
| msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |
| msaR | Multiple Sequence Alignment for R Shiny |
| MSbox | Mass Spectrometry Tools |
| msBP | Multiscale Bernstein Polynomials for Densities |
| mschart | Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint' Documents |
| MSCMT | Multivariate Synthetic Control Method Using Time Series |
| MScombine | Combine Data from Positive and Negative Ionization Mode Finding Common Entities |
| mscstexta4r | R Client for the Microsoft Cognitive Services Text Analytics REST API |
| mscstts | R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API |
| mscsweblm4r | R Client for the Microsoft Cognitive Services Web Language Model REST API |
| msda | Multi-Class Sparse Discriminant Analysis |
| msde | Bayesian Inference for Multivariate Stochastic Differential Equations |
| MsdeParEst | Parametric Estimation in Mixed-Effects Stochastic Differential Equations |
| mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |
| MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |
| MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |
| MSEtool | Management Strategy Evaluation Toolkit |
| MSG | Data and Functions for the Book Modern Statistical Graphics |
| MSGARCH | Markov-Switching GARCH Models |
| MSGLasso | Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure |
| msgpack | A Compact, High Speed Data Format |
| msgpackR | A library to serialize or unserialize data in MessagePack format |
| msgps | Degrees of freedom of elastic net, adaptive lasso and generalized elastic net |
| msgtools | Tools for Developing Diagnostic Messages |
| msigdbr | MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format |
| msir | Model-Based Sliced Inverse Regression |
| MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations |
| msltrend | Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records |
| msm | Multi-State Markov and Hidden Markov Models in Continuous Time |
| msma | Multiblock Sparse Multivariable Analysis |
| msme | Functions and Datasets for "Methods of Statistical Model Estimation" |
| msmtools | Building Augmented Data to Run Multi-State Models with 'msm' Package |
| MSMwRA | Multivariate Statistical Methods with R Applications |
| msos | Data Sets and Functions Used in Multivariate Statistics: Old School by John Marden |
| MSPRT | Modified Sequential Probability Ratio Test (MSPRT) |
| MSQC | Multivariate Statistical Quality Control |
| mssqlR | MSSQL Querying using R |
| msSurv | Nonparametric Estimation for Multistate Models |
| MST | Multivariate Survival Trees |
| mstate | Data Preparation, Estimation and Prediction in Multi-State Models |
| mstherm | Analyze MS/MS Protein Melting Data |
| mstR | Procedures to Generate Patterns under Multistage Testing |
| mstrio | Interface for 'MicroStrategy' REST API |
| msu | Multivariate Symmetric Uncertainty and Other Measurements |
| MSwM | Fitting Markov Switching Models |
| MTA | Multiscalar Territorial Analysis |
| mtconnectR | Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis |
| MTDrh | Mass Transportation Distance Rank Histogram |
| MTE | Maximum Tangent Likelihood and Other Robust Estimation for High-Dimensional Regression |
| mthapower | Sample Size and Post-Hoc Power of Association Studies Involving Mitochondrial DNA Haplogroups |
| mtk | Mexico ToolKit library (MTK) |
| MtreeRing | A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images |
| MTS | All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models |
| mtsdi | Multivariate Time Series Data Imputation |
| MTSYS | Methods in Mahalanobis-Taguchi (MT) System |
| MTurkR | R Client for the MTurk Requester API |
| MTurkRGUI | A Graphical User Interface for MTurkR |
| MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |
| MuChPoint | Multiple Change Point |
| muckrock | Data on Freedom of Information Act Requests |
| mudata2 | Interchange Tools for Multi-Parameter Spatiotemporal Data |
| mudfold | Multiple UniDimensional unFOLDing |
| mueRelativeRisk | Relative Risk Based on the Ratio of Median Unbiased Estimates |
| MuFiCokriging | Multi-Fidelity Cokriging models |
| muhaz | Hazard Function Estimation in Survival Analysis |
| muHVT | Constructing Hierarchical Voronoi Tessellations and Overlay Heatmap for Data Analysis |
| muir | Exploring Data with Tree Data Structures |
| MullerPlot | Generates Muller Plot from Population/Abundance/Frequency Dynamics Data |
| MultAlloc | Optimal Allocation in Stratified Sampling |
| multcomp | Simultaneous Inference in General Parametric Models |
| multcompView | Visualizations of Paired Comparisons |
| multDM | Multivariate Version of the Diebold-Mariano Test |
| multdyn | Multiregression Dynamic Models |
| MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |
| multfisher | Optimal Exact Tests for Multiple Binary Endpoints |
| multgee | GEE Solver for Correlated Nominal or Ordinal Multinomial Responses |
| multiApply | Apply Functions to Multiple Multidimensional Arguments |
| multiAssetOptions | Finite Difference Method for Multi-Asset Option Valuation |
| multiband | Period Estimation for Multiple Bands |
| MultiBD | Multivariate Birth-Death Processes |
| multibiplotGUI | Multibiplot Analysis in R |
| multiCA | Multinomial Cochran-Armitage Trend Test |
| multicastR | A Companion to the Multi-CAST Collection |
| multichull | A Generic Convex-Hull-Based Model Selection Method |
| multicmp | Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution |
| MultiCNVDetect | Multiple Copy Number Variation Detection |
| multicolor | Add Multiple Colors to your Console Output |
| multicon | Multivariate Constructs |
| multicool | Permutations of Multisets in Cool-Lex Order |
| multiDimBio | Multivariate Analysis and Visualization for Biological Data |
| MultiFit | Multivariate Multiscale Framework for Independence Tests |
| multifluo | Dealing with Several Images of a Same Object Constituted of Different Zones |
| multifwf | Read Fixed Width Format Files Containing Lines of Different Type |
| MultiGHQuad | Multidimensional Gauss-Hermite Quadrature |
| multigraph | Plot and Manipulate Multigraphs |
| multigroup | Multigroup Data Analysis |
| multilaterals | Transitive Index Numbers for Cross-Sections and Panel Data |
| MultiLCIRT | Multidimensional Latent Class Item Response Theory Models |
| multilevel | Multilevel Functions |
| multilevelPSA | Multilevel Propensity Score Analysis |
| multimark | Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks |
| MultiMeta | Meta-analysis of Multivariate Genome Wide Association Studies |
| multimode | Mode Testing and Exploring |
| multinbmod | Regression analysis of overdispersed correlated count data |
| multinet | Analysis and Mining of Multilayer Social Networks |
| multinets | Multilevel Networks Analysis |
| MultinomialCI | Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz |
| multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |
| MultiOrd | Generation of Multivariate Ordinal Variates |
| multipanelfigure | Infrastructure to Assemble Multi-Panel Figures (from Grobs) |
| multiPIM | Variable Importance Analysis with Population Intervention Models |
| MultipleBubbles | Test and Detection of Explosive Behaviors for Time Series |
| multipleNCC | Weighted Cox-Regression for Nested Case-Control Data |
| multiplex | Algebraic Tools for the Analysis of Multiple Social Networks |
| MultiplierDEA | Multiplier Data Envelopment Analysis and Cross Efficiency |
| multipol | Multivariate Polynomials |
| multirich | Calculate Multivariate Richness via UTC and sUTC |
| MultiRNG | Multivariate Pseudo-Random Number Generation |
| multiROC | Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications |
| MultiRR | Bias, Precision, and Power for Multi-Level Random Regressions |
| multiselect | Selecting Combinations of Predictors by Leveraging Multiple AUCs for an Ordered Multilevel Outcome |
| multisensi | Multivariate Sensitivity Analysis |
| MultisiteMediation | Causal Mediation Analysis in Multisite Trials |
| MultiSkew | Measures, Tests and Removes Multivariate Skewness |
| multisom | Clustering a Data Set using Multi-SOM Algorithm |
| multispatialCCM | Multispatial Convergent Cross Mapping |
| multistate | Fitting Multistate Models |
| multistateutils | Utility Functions for Parametric Multi-State Models |
| MultiSV | MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing |
| multitaper | Spectral Analysis Tools using the Multitaper Method |
| multivariance | Measuring Multivariate Dependence Using Distance Multivariance |
| MultivariateRandomForest | Models Multivariate Cases Using Random Forests |
| MultiVarMI | Multiple Imputation for Multivariate Data |
| MultiVarSel | Variable Selection in a Multivariate Linear Model |
| multivator | A Multivariate Emulator |
| multiwave | Estimation of Multivariate Long-Memory Models Parameters |
| multiway | Component Models for Multi-Way Data |
| multiwayvcov | Multi-Way Standard Error Clustering |
| MultNonParam | Multivariate Nonparametric Methods |
| multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |
| muma | Metabolomics Univariate and Multivariate Analysis |
| MuMIn | Multi-Model Inference |
| mumm | Multiplicative Mixed Models using the Template Model Builder |
| munfold | Metric Unfolding |
| munsell | Utilities for Using Munsell Colours |
| munsellinterpol | Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB |
| muRL | Mailmerge using R, LaTeX, and the Web |
| murphydiagram | Murphy Diagrams for Forecast Comparisons |
| MUS | Monetary Unit Sampling and Estimation Methods, Widely Used in Auditing |
| musica | Multiscale Climate Model Assessment |
| musicNMR | Conversion of Nuclear Magnetic Resonance spectrum in audio file |
| muStat | Prentice Rank Sum Test and McNemar Test |
| mut | Pairwise Likelihood Ratios |
| mutoss | Unified Multiple Testing Procedures |
| mutossGUI | A Graphical User Interface for the MuToss Project |
| mutSignatures | Decipher Mutational Signatures from Somatic Mutational Catalogs |
| MuViCP | MultiClass Visualizable Classification using Combination of Projections |
| MVA | An Introduction to Applied Multivariate Analysis with R |
| mvabund | Statistical Methods for Analysing Multivariate Abundance Data |
| MVar | Multivariate Analysis |
| MVar.pt | Analise multivariada (brazilian portuguese) |
| MVB | Mutivariate Bernoulli log-linear model |
| MvBinary | Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution |
| mvbutils | Workspace organization, code and documentation editing, package prep and editing, etc |
| mvc | Multi-View Clustering |
| mvcluster | Multi-View Clustering |
| mvctm | Multivariate Variance Components Tests for Multilevel Data |
| mvcwt | Wavelet analysis of multiple time series |
| mvdalab | Multivariate Data Analysis Laboratory |
| mvglmmRank | Multivariate Generalized Linear Mixed Models for Ranking Sports Teams |
| mvinfluence | Influence Measures and Diagnostic Plots for Multivariate Linear Models |
| MVisAGe | Compute and Visualize Bivariate Associations |
| MVLM | Multivariate Linear Model with Analytic p-Values |
| mvLSW | Multivariate, Locally Stationary Wavelet Process Estimation |
| mvmesh | Multivariate Meshes and Histograms in Arbitrary Dimensions |
| mvmeta | Multivariate and Univariate Meta-Analysis and Meta-Regression |
| mvMISE | A General Framework of Multivariate Mixed-Effects Selection Models |
| mvMonitoring | Multi-State Adaptive Dynamic Principal Component Analysis for Multivariate Process Monitoring |
| mvMORPH | Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data |
| MVN | Multivariate Normality Tests |
| mvna | Nelson-Aalen Estimator of the Cumulative Hazard in Multistate Models |
| MVNBayesian | Bayesian Analysis Framework for MVN (Mixture) Distribution |
| mvnfast | Fast Multivariate Normal and Student's t Methods |
| mvngGrAd | Moving Grid Adjustment in Plant Breeding Field Trials |
| mvnmle | ML Estimation for Multivariate Normal Data with Missing Values |
| mvnormtest | Normality test for multivariate variables |
| mvnpermute | Generate New Multivariate Normal Samples from Permutations |
| mvnTest | Goodness of Fit Tests for Multivariate Normality |
| mvord | Multivariate Ordinal Regression Models |
| mvoutlier | Multivariate Outlier Detection Based on Robust Methods |
| mvPot | Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events |
| mvProbit | Multivariate Probit Models |
| mvprpb | Orthant Probability of the Multivariate Normal Distribution |
| mvQuad | Methods for Multivariate Quadrature |
| MVR | Mean-Variance Regularization |
| mvrtn | Mean and Variance of Truncated Normal Distribution |
| mvsf | Shapiro-Francia Multivariate Normality Test |
| mvShapiroTest | Generalized Shapiro-Wilk test for multivariate normality |
| mvSLOUCH | Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses |
| mvst | Bayesian Inference for the Multivariate Skew-t Model |
| MVT | Estimation and Testing for the Multivariate t-Distribution |
| mvtboost | Tree Boosting for Multivariate Outcomes |
| mvtmeta | Multivariate meta-analysis |
| mvtnorm | Multivariate Normal and t Distributions |
| mvtsplot | Multivariate Time Series Plot |
| mwa | Causal Inference in Spatiotemporal Event Data |
| mwaved | Multichannel Wavelet Deconvolution with Additive Long Memory Noise |
| MWLasso | Penalized Moving-Window Lasso Method for Genome-Wide Association Studies |
| MWRidge | Two Stage Moving-Window Ridge Method for Prediction and Estimation |
| mxkssd | Efficient mixed-level k-circulant supersaturated designs |
| MXM | Feature Selection (Including Multiple Solutions) and Bayesian Networks |
| My.stepwise | Stepwise Variable Selection Procedures for Regression Analysis |
| mycobacrvR | Integrative immunoinformatics for Mycobacterial diseases in R platform |
| mycor | Automatic Correlation and Regression Test in a 'data.frame' |
| myepisodes | MyEpisodes RSS/API functions |
| Myrrix | Interface to Myrrix. Myrrix is a Complete, Real-Time, Scalable Clustering and Recommender System, Evolved from Apache Mahout |
| Myrrixjars | R/Myrrix Interface Jars |
| myTAI | Evolutionary Transcriptomics |
| mztwinreg | Regression Models for Monozygotic Twin Data |
| n1qn1 | Port of the 'Scilab' 'n1qn1' and 'qnbd' Modules for (Un)constrained BFGS Optimization |
| na.tools | Comprehensive Library for Working with Missing (NA) Values in Vectors |
| nabor | Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions |
| NADA | Nondetects and Data Analysis for Environmental Data |
| nadiv | (Non)Additive Genetic Relatedness Matrices |
| NAEPprimer | The NAEP Primer |
| naivebayes | High Performance Implementation of the Naive Bayes Algorithm |
| naivereg | Nonparametric Additive Instrumental Variable Estimator: A Group Shrinkage Estimation Perspective |
| NAM | Nested Association Mapping |
| namedCapture | Named Capture Regular Expressions |
| NameNeedle | Using Needleman-Wunsch to Match Sample Names |
| namespace | Provide namespace managment functions not (yet) present in base R |
| nandb | Number and Brightness Image Analysis |
| naniar | Data Structures, Summaries, and Visualisations for Missing Data |
| nanop | Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function |
| NanoStringNorm | Normalize NanoString miRNA and mRNA Data |
| nanotime | Nanosecond-Resolution Time for R |
| NAPPA | Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data |
| naptime | A Flexible and Robust Sys.sleep() Replacement |
| nardl | Nonlinear Cointegrating Autoregressive Distributed Lag Model |
| narray | Subset- And Name-Aware Array Utility Functions |
| nasadata | Interface to Various NASA API's |
| nasapower | 'NASA' 'POWER' 'API' Client |
| nasaweather | Collection of datasets from the ASA 2006 data expo |
| nat | NeuroAnatomy Toolbox for Analysis of 3D Image Data |
| nat.nblast | NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering |
| nat.templatebrains | NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains |
| nat.utils | File System Utility Functions for 'NeuroAnatomy Toolbox' |
| natserv | 'NatureServe' Interface |
| natural | Estimating the Error Variance in a High-Dimensional Linear Model |
| naturalsort | Natural Ordering |
| NatureSounds | Animal Sounds for Bioacustic Analysis |
| NB | Maximum Likelihood method in estimating effective population size from genetic data |
| NB.MClust | Negative Binomial Model-Based Clustering |
| nbc4va | Bayes Classifier for Verbal Autopsy Data |
| NbClust | Determining the Best Number of Clusters in a Data Set |
| nbconvertR | Vignette Engine Wrapping IPython Notebooks |
| NBDdirichlet | NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research |
| NBLDA | Negative Binomial Linear Discriminant Analysis |
| nbpMatching | Functions for Optimal Non-Bipartite Matching |
| NBPSeq | Negative Binomial Models for RNA-Sequencing Data |
| NCA | Necessary Condition Analysis |
| nCal | Nonlinear Calibration |
| ncappc | NCA Calculations and Population Model Diagnosis |
| ncar | Noncompartmental Analysis for Pharmacokinetic Report |
| ncbit | retrieve and build NBCI taxonomic data |
| ncdf.tools | Easier 'NetCDF' File Handling |
| ncdf4 | Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files |
| ncdf4.helpers | Helper functions for use with the ncdf4 package |
| ncdump | Extract Metadata from 'NetCDF' Files as Data Frames |
| nCDunnett | Noncentral Dunnett's Test Distribution |
| ncf | Spatial Covariance Functions |
| ncg | Computes the noncentral gamma function |
| ncmeta | Straightforward 'NetCDF' Metadata |
| NCmisc | Miscellaneous Functions for Creating Adaptive Functions and Scripts |
| ncodeR | Techniques for Automated Classifiers |
| ncpen | Nonconvex Penalized Estimation for Generalized Linear Models |
| NCSampling | Nearest Centroid (NC) Sampling |
| NCutYX | Clustering of Omics Data of Multiple Types with a Multilayer Network Representation |
| ncvreg | Regularization Paths for SCAD and MCP Penalized Regression Models |
| ndjson | Wicked-Fast Streaming 'JSON' ('ndjson') Reader |
| ndl | Naive Discriminative Learning |
| ndtv | Network Dynamic Temporal Visualizations |
| NEArender | Network Enrichment Analysis |
| nearfar | Near-Far Matching |
| neariso | Near-Isotonic Regression |
| neat | Efficient Network Enrichment Analysis Test |
| NeatMap | Non-clustered heatmap alternatives |
| neatmaps | Heatmaps for Multiple Network Data |
| needs | Attaches and Installs Packages |
| needy | needy |
| NEff | Calculating Effective Sizes Based on Known Demographic Parameters of a Population |
| NegBinBetaBinreg | Negative Binomial and Beta Binomial Bayesian Regression Models |
| negenes | Estimating the Number of Essential Genes in a Genome |
| neighbr | Classification, Regression, Clustering with K Nearest Neighbors |
| neldermead | R Port of the 'Scilab' Neldermead Module |
| neotoma | Access to the Neotoma Paleoecological Database Through R |
| nephro | Utilities for Nephrology |
| NEpiC | Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals |
| nesRdata | National Eutrophication Survey Data |
| NestedCategBayesImpute | Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations |
| NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |
| nestedRanksTest | Mann-Whitney-Wilcoxon Test for Nested Ranks |
| nestfs | Cross-Validated (Nested) Forward Selection |
| net.security | Security Standards Data Sets |
| netassoc | Inference of Species Associations from Co-Occurrence Data |
| NetCluster | Clustering for networks |
| netcoh | Statistical Modeling with Network Cohesion |
| netCoin | Interactive Analytic Networks |
| netcom | Dynamic Network Alignment |
| NetComp | Network Generation and Comparison |
| NetData | Network Data for McFarland's SNA R labs |
| netdep | Testing for Network Dependence |
| netdiffuseR | Analysis of Diffusion and Contagion Processes on Networks |
| netgen | Network Generator for Combinatorial Graph Problems |
| netgsa | Network-Based Gene Set Analysis |
| netgwas | Network-Based Genome Wide Association Studies |
| NetIndices | Estimating network indices, including trophic structure of foodwebs in R |
| netjack | Tools for Working with Samples of Networks |
| NetLogoR | Build and Run Spatially Explicit Agent-Based Models |
| netmeta | Network Meta-Analysis using Frequentist Methods |
| NetOrigin | Origin Estimation for Propagation Processes on Complex Networks |
| NetPreProc | Network Pre-Processing and Normalization |
| netrankr | Analyzing Partial Rankings in Networks |
| netregR | Regression of Network Responses |
| NetRep | Permutation Testing Network Module Preservation Across Datasets |
| nets | Network Estimation for Time Series |
| netSEM | Network Structural Equation Modeling |
| NetSwan | Network Strengths and Weaknesses Analysis |
| NetWeaver | Graphic Presentation of Complex Genomic and Network Data Analysis |
| network | Classes for Relational Data |
| NetworkChange | Bayesian Package for Network Changepoint Analysis |
| NetworkComparisonTest | Statistical Comparison of Two Networks Based on Three Invariance Measures |
| networkD3 | D3 JavaScript Network Graphs from R |
| NetworkDistance | Distance Measures for Networks |
| networkDynamic | Dynamic Extensions for Network Objects |
| networkDynamicData | Dynamic (Longitudinal) Network Datasets |
| NetworkExtinction | Extinction Simulation in Food Webs |
| networkGen | Network Maze Generator |
| NetworkInference | Inferring Latent Diffusion Networks |
| networkR | Network Analysis and Visualization |
| networkreporting | Tools for using Network Reporting Estimators |
| NetworkRiskMeasures | Risk Measures for (Financial) Networks |
| networksis | Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling |
| networkTomography | Tools for network tomography |
| NetworkToolbox | Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis |
| networktools | Tools for Identifying Important Nodes in Networks |
| neural | Neural Networks |
| neuralnet | Training of Neural Networks |
| NeuralNetTools | Visualization and Analysis Tools for Neural Networks |
| neurobase | 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects |
| neuroblastoma | Neuroblastoma copy number profiles |
| neurohcp | Human 'Connectome' Project Interface |
| neuroim | Data Structures and Handling for Neuroimaging Data |
| neuropsychology | Toolbox for Psychologists, Neuropsychologists and Neuroscientists |
| neuRosim | Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data |
| neutralitytestr | Test for a Neutral Evolutionary Model in Cancer Sequencing Data |
| neverhpfilter | A Better Alternative to the Hodrick-Prescott Filter |
| Newdistns | Computes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions |
| newsmap | Semi-Supervised Model for Geographical Document Classification |
| newTestSurvRec | Statistical Tests to Compare Curves with Recurrent Events |
| nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test |
| nFCA | Numerical Formal Concept Analysis for Systematic Clustering |
| NFP | Network Fingerprint Framework in R |
| NFWdist | The Standard Distribution Functions for the 3D NFW Profile |
| ngram | Fast n-Gram 'Tokenization' |
| ngramrr | A Simple General Purpose N-Gram Tokenizer |
| ngspatial | Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data |
| ngstk | Next-Generation Sequencing (NGS) Data Analysis Toolkit |
| NHANES | Data from the US National Health and Nutrition Examination Study |
| nhanesA | NHANES Data Retrieval |
| NHEMOtree | Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification |
| NHLData | Scores for Every Season Since the Founding of the NHL in 1917 |
| nhlscrapr | Compiling the NHL Real Time Scoring System Database for easy use in R |
| NHMSAR | Non-Homogeneous Markov Switching Autoregressive Models |
| NHPoisson | Modelling and Validation of Non Homogeneous Poisson Processes |
| nhstplot | Plot Null Hypothesis Significance Tests |
| nice | Get or Set UNIX Niceness |
| nicheROVER | (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches |
| NightDay | Night and Day Boundary Plot Function |
| nilde | Nonnegative Integer Solutions of Linear Diophantine Equations with Applications |
| nima | Nima Hejazi's R Toolbox |
| nimble | MCMC, Particle Filtering, and Programmable Hierarchical Modeling |
| nipals | Principal Components Analysis using NIPALS with Gram-Schmidt Orthogonalization |
| Nippon | Japanese Utility Functions and Data |
| NipponMap | Japanese Map Data and Functions |
| NIPTeR | Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing |
| NIRStat | Novel Statistical Methods for Studying Near-Infrared Spectroscopy (NIRS) Time Series Data |
| NISTnls | Nonlinear least squares examples from NIST |
| NISTunits | Fundamental Physical Constants and Unit Conversions from NIST |
| NITPicker | Finds the Best Subset of Points to Sample |
| nitrcbot | Download Image Files from the 'NeuroImaging Tools and Resources Collaboratory' |
| NitrogenUptake2016 | Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata |
| nivm | Noninferiority Tests with Variable Margins |
| nlaR | Interface to the National Lakes Assessment |
| NlcOptim | Solve Nonlinear Optimization with Nonlinear Constraints |
| nlcv | Nested Loop Cross Validation |
| nleqslv | Solve Systems of Nonlinear Equations |
| nlgeocoder | Geocoding for the Netherlands |
| NlinTS | Non Linear Time Series Analysis |
| nlirms | Non-Life Insurance Rate-Making System |
| nlme | Linear and Nonlinear Mixed Effects Models |
| nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |
| nlmeU | Datasets and utility functions enhancing functionality of nlme package |
| nlmixr | Nonlinear Mixed Effects Models in Population Pharmacokinetics and Pharmacodynamics |
| NLMR | Simulating Neutral Landscape Models |
| nlmrt | Functions for Nonlinear Least Squares Solutions |
| nlnet | Nonlinear Network Reconstruction, Clustering, and Variable Selection Based on DCOL (Distance Based on Conditional Ordered List) |
| nloptr | R Interface to NLopt |
| NLP | Natural Language Processing Infrastructure |
| NLPutils | Natural Language Processing Utilities |
| nlr | Nonlinear Regression Modelling using Robust Methods |
| nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |
| NLRoot | searching for the root of equation |
| nlrr | Non-Linear Relative Risk Estimation and Plotting |
| nls.multstart | Robust Non-Linear Regression using AIC Scores |
| nls2 | Non-linear regression with brute force |
| nlsem | Fitting Struc |