A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |
abbyyR | Access to Abbyy Optical Character Recognition (OCR) API |
abc | Tools for Approximate Bayesian Computation (ABC) |
abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |
ABC.RAP | Array Based CpG Region Analysis Pipeline |
ABCanalysis | Computed ABC Analysis |
abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |
ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |
ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |
abcrf | Approximate Bayesian Computation via Random Forests |
abctools | Tools for ABC Analyses |
abd | The Analysis of Biological Data |
abe | Augmented Backward Elimination |
abf2 | Load Gap-Free Axon ABF2 Files |
ABHgenotypeR | Easy Visualization of ABH Genotypes |
abind | Combine Multidimensional Arrays |
abjutils | Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association |
abn | Modelling Multivariate Data with Additive Bayesian Networks |
abnormality | Measure a Subject's Abnormality with Respect to a Reference Population |
abodOutlier | Angle-Based Outlier Detection |
ABPS | The Abnormal Blood Profile Score to Detect Blood Doping |
AbsFilterGSEA | Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering |
AbSim | Time Resolved Simulations of Antibody Repertoires |
abstractr | An R-Shiny Application for Creating Visual Abstracts |
abundant | High-Dimensional Principal Fitted Components and Abundant Regression |
Ac3net | Inferring Directional Conservative Causal Core Gene Networks |
ACA | Abrupt Change-Point or Aberration Detection in Point Series |
acc | Exploring Accelerometer Data |
accelerometry | Functions for Processing Accelerometer Data |
accelmissing | Missing Value Imputation for Accelerometer Data |
AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |
ACCLMA | ACC & LMA Graph Plotting |
accrual | Bayesian Accrual Prediction |
accrued | Data Quality Visualization Tools for Partially Accruing Data |
accSDA | Accelerated Sparse Discriminant Analysis |
ACD | Categorical data analysis with complete or missing responses |
ACDm | Tools for Autoregressive Conditional Duration Models |
acebayes | Optimal Bayesian Experimental Design using the ACE Algorithm |
acepack | ACE and AVAS for Selecting Multiple Regression Transformations |
ACEt | Estimating Dynamic Heritability and Twin Model Comparison |
acid | Analysing Conditional Income Distributions |
acm4r | Align-and-Count Method comparisons of RFLP data |
ACMEeqtl | Estimation of Interpretable eQTL Effect Sizes Using a Log of Linear Model |
acmeR | Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines |
ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |
acnr | Annotated Copy-Number Regions |
acopula | Modelling Dependence with Multivariate Archimax (or any User-Defined Continuous) Copulas |
AcousticNDLCodeR | Coding Sound Files for Use with NDL |
acp | Autoregressive Conditional Poisson |
aCRM | Convenience functions for analytical Customer Relationship Management |
AcrossTic | A Cost-Minimal Regular Spanning Subgraph with TreeClust |
acrt | Autocorrelation Robust Testing |
acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |
ACSNMineR | Gene Enrichment Analysis from ACSN Maps or GMT Files |
acss | Algorithmic Complexity for Short Strings |
acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |
ACSWR | A Companion Package for the Book "A Course in Statistics with R" |
ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |
Actigraphy | Actigraphy Data Analysis |
ActisoftR | A Toolbox for Parsing Scored Actigraphy Data |
ActiveDriver | Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites |
activity | Animal Activity Statistics |
ActivityIndex | Activity Index Calculation using Raw Accelerometry Data |
activpalProcessing | Process activPAL Events Files |
actogrammr | Read in Activity Data and Plot Actograms |
actuar | Actuarial Functions and Heavy Tailed Distributions |
AcuityView | A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity |
ada | The R Package Ada for Stochastic Boosting |
adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |
adagio | Discrete and Global Optimization Routines |
adamethods | Archetypoid Algorithms and Anomaly Detection |
AdapEnetClass | A Class of Adaptive Elastic Net Methods for Censored Data |
adapr | Implementation of an Accountable Data Analysis Process |
AdapSamp | Adaptive Sampling Algorithms |
adaptalint | Check Code Style Painlessly |
AdaptFit | Adaptive Semiparametic Regression |
AdaptFitOS | Adaptive Semiparametric Additive Regression with Simultaneous Confidence Bands and Specification Tests |
AdaptGauss | Gaussian Mixture Models (GMM) |
adaptiveGPCA | Adaptive Generalized PCA |
AdaptiveSparsity | Adaptive Sparsity Models |
adaptivetau | Tau-Leaping Stochastic Simulation |
adaptMCMC | Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler |
adaptMT | Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information |
adaptsmoFMRI | Adaptive Smoothing of FMRI Data |
adaptTest | Adaptive two-stage tests |
AdaSampling | Adaptive Sampling for Positive Unlabeled and Label Noise Learning |
ADCT | Adaptive Design in Clinical Trials |
addhaz | Binomial and Multinomial Additive Hazard Models |
addhazard | Fit Additive Hazards Models for Survival Analysis |
addinslist | Discover and Install Useful RStudio Addins |
additiveDEA | Additive Data Envelopment Analysis Models |
additivityTests | Additivity Tests in the Two Way Anova with Single Sub-class Numbers |
addreg | Additive Regression for Discrete Data |
ADDT | Analysis of Accelerated Destructive Degradation Test Data |
ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |
ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |
adeba | Adaptive Density Estimation by Bayesian Averaging |
adegenet | Exploratory Analysis of Genetic and Genomic Data |
adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |
adehabitatHR | Home Range Estimation |
adehabitatHS | Analysis of Habitat Selection by Animals |
adehabitatLT | Analysis of Animal Movements |
adehabitatMA | Tools to Deal with Raster Maps |
adephylo | Exploratory Analyses for the Phylogenetic Comparative Method |
adepro | A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles |
AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |
adespatial | Multivariate Multiscale Spatial Analysis |
adfExplorer | Import from and Export to Amiga Disk Files |
ADGofTest | Anderson-Darling GoF test |
AdhereR | Adherence to Medications |
adhoc | Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification |
adimpro | Adaptive Smoothing of Digital Images |
adiv | Analysis of Diversity |
AdjBQR | Adjusted Bayesian Quantile Regression Inference |
adjclust | Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix |
adjustedcranlogs | Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs |
adklakedata | Adirondack Long-Term Lake Data |
adlift | An Adaptive Lifting Scheme Algorithm |
AdMit | Adaptive Mixture of Student-t Distributions |
admixturegraph | Admixture Graph Manipulation and Fitting |
ADMM | Algorithms using Alternating Direction Method of Multipliers |
ADMMnet | Regularized Model with Selecting the Number of Non-Zeros |
ADMMsigma | Penalized Precision Matrix Estimation via ADMM |
adnuts | No-U-Turn MCMC Sampling for 'ADMB' and 'TMB' Models |
ADPclust | Fast Clustering Using Adaptive Density Peak Detection |
ADPF | Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay |
adpss | Design and Analysis of Locally or Globally Efficient Adaptive Designs |
ads | Spatial Point Patterns Analysis |
AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |
advclust | Object Oriented Advanced Clustering |
AdvDif4 | Solving 1D Advection Bi-Flux Diffusion Equation |
adwave | Wavelet Analysis of Genomic Data from Admixed Populations |
adwordsR | Access the 'Google Adwords' API |
AEDForecasting | Change Point Analysis in ARIMA Forecasting |
aemo | Download and Process AEMO Price and Demand Data |
AER | Applied Econometrics with R |
AeRobiology | A Computational Tool for Aerobiological Data |
AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |
afc | Generalized Discrimination Score |
afCEC | Active Function Cross-Entropy Clustering |
afex | Analysis of Factorial Experiments |
affluenceIndex | Affluence Indices |
AFM | Atomic Force Microscope Image Analysis |
afmToolkit | Functions for Atomic Force Microscope Force-Distance Curves Analysis |
afpt | Tools for Modelling of Animal Flight Performance |
aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |
AGD | Analysis of Growth Data |
aGE | Adaptive Set-Based Gene-Environment Interaction Test for Rare Variants |
AggregateR | Aggregate Numeric, Date and Categorical Variables by an ID |
aggregation | p-Value Aggregation Methods |
AGHmatrix | Relationship Matrices for Diploid and Autopolyploid Species |
agop | Aggregation Operators and Preordered Sets |
AGread | Read Data Files from ActiGraph Monitors |
agRee | Various Methods for Measuring Agreement |
AgreementInterval | Agreement Interval of Two Measurement Methods |
agricolae | Statistical Procedures for Agricultural Research |
agridat | Agricultural Datasets |
agriTutorial | Tutorial Analysis of Some Agricultural Experiments |
agriwater | Evapotranspiration and Energy Fluxes Spatial Analysis |
agrmt | Calculate Agreement or Consensus in Ordered Rating Scales |
AGSDest | Estimation in Adaptive Group Sequential Trials |
agsemisc | Miscellaneous plotting and utility functions |
ahaz | Regularization for semiparametric additive hazards regression |
AHMbook | Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' |
ahnr | An Implementation of the Artificial Hydrocarbon Networks |
AhoCorasickTrie | Fast Searching for Multiple Keywords in Multiple Texts |
ahp | Analytic Hierarchy Process |
ahpsurvey | Analytic Hierarchy Process for Survey Data |
AHR | Estimation and Testing of Average Hazard Ratios |
AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |
AID | Box-Cox Power Transformation |
aidar | Tools for Reading AIDA Files |
AIG | Automatic Item Generator |
AIM | AIM: adaptive index model |
aimPlot | Create Pie Like Plot for Completeness |
aire.zmvm | Download Mexico City Pollution, Wind, and Temperature Data |
airGR | Suite of GR Hydrological Models for Precipitation-Runoff Modelling |
airGRteaching | Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included) |
airportr | Convenience Tools for Working with Airport Data |
airr | AIRR Data Representation Reference Library |
aiRthermo | Atmospheric Thermodynamics and Visualization |
ajv | Another JSON Schema Validator |
Ake | Associated Kernel Estimations |
akima | Interpolation of Irregularly and Regularly Spaced Data |
akmeans | Adaptive Kmeans algorithm based on threshold |
ALA4R | Atlas of Living Australia (ALA) Data and Resources in R |
alabama | Constrained Nonlinear Optimization |
alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |
albopictus | Age-Structured Population Dynamics Model |
ald | The Asymmetric Laplace Distribution |
ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |
ALEPlot | Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots |
aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |
alfred | Downloading Time Series from ALFRED Database for Various Vintages |
AlgDesign | Algorithmic Experimental Design |
AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |
algorithmia | Allows you to Easily Interact with the Algorithmia Platform |
algstat | Algebraic statistics in R |
alignfigR | Visualizing Multiple Sequence Alignments with 'ggplot2' |
alineR | Alignment of Phonetic Sequences Using the 'ALINE' Algorithm |
allan | Automated Large Linear Analysis Node |
allanvar | Allan Variance Analysis |
alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |
AlleleRetain | Allele Retention, Inbreeding, and Demography |
allelic | A fast, unbiased and exact allelic exact test |
AllPossibleSpellings | Computes all of a word's possible spellings |
alluvial | Alluvial Diagrams |
alpaca | Fit GLM's with High-Dimensional k-Way Fixed Effects |
alphabetr | Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells |
alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |
alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |
alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |
AlphaSimR | Breeding Program Simulations |
alphastable | Inference for Stable Distribution |
AlphaVantageClient | Wrapper for Alpha Vantage API |
alphavantager | Lightweight R Interface to the Alpha Vantage API |
alr3 | Data to Accompany Applied Linear Regression 3rd Edition |
alr4 | Data to Accompany Applied Linear Regression 4th Edition |
ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |
ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |
ALSM | Companion to Applied Linear Statistical Models |
alterryx | An 'API' Client for the 'Alteryx' Gallery |
altmeta | Alternative Meta-Analysis Methods |
ALTopt | Optimal Experimental Designs for Accelerated Life Testing |
amap | Another Multidimensional Analysis Package |
AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |
ambhasGW | Ground Water Modelling |
ambient | A Generator of Multidimensional Noise |
AMCP | A Model Comparison Perspective |
AMCTestmakeR | Generate LaTeX Code for Auto-Multiple-Choice (AMC) |
ameco | European Commission Annual Macro-Economic (AMECO) Database |
Amelia | A Program for Missing Data |
amelie | Anomaly Detection with Normal Probability Functions |
amen | Additive and Multiplicative Effects Models for Networks and Relational Data |
AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts |
AmesHousing | The Ames Iowa Housing Data |
AMGET | Post-processing tool for ADAPT 5 |
AMIAS | Alternating Minimization Induced Active Set Algorithms |
AmigaFFH | Commodore Amiga File Format Handler |
aml | Adaptive Mixed LASSO |
ammistability | Additive Main Effects and Multiplicative Interaction Model Stability Parameters |
AMModels | Adaptive Management Model Manager |
AmmoniaConcentration | Un-Ionized Ammonia Concentration |
aMNLFA | Automated Fitting of Moderated Nonlinear Factor Analysis Through the 'Mplus' Program |
AMOEBA | A Multidirectional Optimum Ecotope-Based Algorithm |
AMORE | A MORE flexible neural network package |
AmostraBrasil | Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps |
ampd | An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals |
AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |
AMR | Antimicrobial Resistance Analysis |
amt | Animal Movement Tools |
AmyloGram | Prediction of Amyloid Proteins |
AnaCoDa | Analysis of Codon Data under Stationarity using a Bayesian Framework |
anacor | Simple and Canonical Correspondence Analysis |
analogsea | Interface to 'Digital Ocean' |
analogue | Analogue and Weighted Averaging Methods for Palaeoecology |
analogueExtra | Additional Functions for Use with the Analogue Package |
analysisPipelines | Compose Interoperable Analysis Pipelines & Put Them in Production |
analytics | Regression Outlier Detection, Stationary Bootstrap, Testing Weak Stationarity, NA Imputation, and Other Tools for Data Analysis |
analyz | Model Layer for Automatic Data Analysis via CSV File Interpretation |
AnalyzeFMRI | Functions for Analysis of fMRI Datasets Stored in the ANALYZE or NIFTI Format |
AnalyzeTS | Analyze Fuzzy Time Series |
anapuce | Tools for Microarray Data Analysis |
AncestryMapper | Assigning Ancestry Based on Population References |
anchoredDistr | Post-Processing for the Method of Anchored Distributions |
anchors | Statistical analysis of surveys with anchoring vignettes |
AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |
andrews | Andrews curves |
anesrake | ANES Raking Implementation |
anfis | Adaptive Neuro Fuzzy Inference System in R |
AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |
angstroms | Tools for 'ROMS' the Regional Ocean Modeling System |
aniDom | Inferring Dominance Hierarchies and Estimating Uncertainty |
anim.plots | Simple Animated Plots for R |
animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |
animation | A Gallery of Animations in Statistics and Utilities to Create Animations |
anipaths | Animation of Observed Trajectories Using Spline-Based Interpolation |
anMC | Compute High Dimensional Orthant Probabilities |
ANN2 | Artificial Neural Networks for Anomaly Detection |
AnnotationBustR | Extract Subsequences from GenBank Annotations |
AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file |
AnnuityRIR | Annuity Random Interest Rates |
anocva | A Non-Parametric Statistical Test to Compare Clustering Structures |
anoint | Analysis of Interactions |
ANOM | Analysis of Means |
anomalize | Tidy Anomaly Detection |
anomaly | Detecting Anomalies in Data |
anomalyDetection | Implementation of Augmented Network Log Anomaly Detection Procedures |
anominate | Alpha-NOMINATE Ideal Point Estimator |
anonymizer | Anonymize Data Containing Personally Identifiable Information |
ANOVA.TFNs | One-Way Analysis of Variance Based on Triangular Fuzzy Numbers |
ANOVAreplication | Test ANOVA Replications by Means of the Prior Predictive p-Value |
AntAngioCOOL | Anti-Angiogenic Peptide Prediction |
antaresEditObject | Edit an 'Antares' Simulation |
antaresProcessing | 'Antares' Results Processing |
antaresRead | Import, Manipulate and Explore the Results of an 'Antares' Simulation |
antaresViz | Antares Visualizations |
AnthropMMD | An R-Shiny Application for Smith's Mean Measure of Divergence (MMD) |
Anthropometry | Statistical Methods for Anthropometric Data |
antitrust | Tools for Antitrust Practitioners |
antiword | Extract Text from Microsoft Word Documents |
AntWeb | programmatic interface to the AntWeb |
anyLib | Install and Load Any Package from CRAN, Bioconductor or Github |
anytime | Anything to 'POSIXct' or 'Date' Converter |
aod | Analysis of Overdispersed Data |
aods3 | Analysis of Overdispersed Data using S3 Methods |
aoos | Another Object Orientation System |
Aoptbdtvc | A-Optimal Block Designs for Comparing Test Treatments with Controls |
aoristic | aoristic analysis with spatial output (kml) |
apa | Format Outputs of Statistical Tests According to APA Guidelines |
ApacheLogProcessor | Process the Apache Web Server Log Files |
apaTables | Create American Psychological Association (APA) Style Tables |
apaText | Create R Markdown Text for Results in the Style of the American Psychological Association (APA) |
apc | Age-Period-Cohort Analysis |
APCanalysis | Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons |
apcf | Adapted Pair Correlation Function |
apcluster | Affinity Propagation Clustering |
apdesign | An Implementation of the Additive Polynomial Design Matrix |
ape | Analyses of Phylogenetics and Evolution |
apercu | Quick Look at your Data |
apex | Phylogenetic Methods for Multiple Gene Data |
APfun | Geo-Processing Helper Functions |
aphid | Analysis with Profile Hidden Markov Models |
aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013) |
aplpack | Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others |
APML0 | Augmented and Penalized Minimization Method L0 |
apmsWAPP | Pre- and Postprocessing for AP-MS data analysis based on spectral counts |
apng | Convert Png Files into Animated Png |
apollo | Tools for Estimating Discrete Choice Models |
appell | Compute Appell's F1 hypergeometric function |
APPEstimation | Adjusted Prediction Model Performance Estimation |
apple | Approximate Path for Penalized Likelihood Estimators |
AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |
appnn | Amyloid Propensity Prediction Neural Network |
approximator | Bayesian Prediction of Complex Computer Codes |
approxmatch | Approximately Optimal Fine Balance Matching with Multiple Groups |
aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |
apricom | Tools for the a Priori Comparison of Regression Modelling Strategies |
aprof | Amdahl's Profiler, Directed Optimization Made Easy |
APSIM | General Utility Functions for the 'Agricultural Production Systems Simulator' |
APSIMBatch | Analysis the output of Apsim software |
apsimr | Edit, Run and Evaluate APSIM Simulations Easily Using R |
apsrtable | apsrtable model-output formatter for social science |
apt | Asymmetric Price Transmission |
aptg | Automatic Phylogenetic Tree Generator |
APtools | Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |
apTreeshape | Analyses of Phylogenetic Treeshape |
aqfig | Functions to help display air quality model output and monitoring data |
aqp | Algorithms for Quantitative Pedology |
aqr | Interface methods to use with an ActiveQuant Master Server |
AquaEnv | Integrated Development Toolbox for Aquatic Chemical Model Generation |
AR | Another Look at the Acceptance-Rejection Method |
ar.matrix | Simulate Auto Regressive Data from Precision Matricies |
AR1seg | Segmentation of an autoregressive Gaussian process of order 1 |
arabicStemR | Arabic Stemmer for Text Analysis |
ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |
arc | Association Rule Classification |
ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |
ArchaeoChron | Bayesian Modeling of Archaeological Chronologies |
ArchaeoPhases | Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' |
archdata | Example Datasets from Archaeological Research |
archetypes | Archetypal Analysis |
archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |
archivist | Tools for Storing, Restoring and Searching for R Objects |
archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |
ArCo | Artificial Counterfactual Package |
ArDec | Time series autoregressive-based decomposition |
areal | Areal Weighted Interpolation |
areaplot | Plot Stacked Areas and Confidence Bands as Filled Polygons |
arena2r | Plots, Summary Statistics and Tools for Arena Simulation Users |
arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |
arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |
ArfimaMLM | Arfima-MLM Estimation For Repeated Cross-Sectional Data |
argon2 | Secure Password Hashing |
argonDash | Argon Shiny Dashboard Template |
argonR | R Interface to Argon HTML Design |
argosfilter | Argos locations filter |
argparse | Command Line Optional and Positional Argument Parser |
argparser | Command-Line Argument Parser |
ArgumentCheck | Improved Communication to Users with Respect to Problems in Function Arguments |
ARHT | Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data |
ari | Automated R Instructor |
ARIbrain | All-Resolution Inference |
aricode | Efficient Computations of Standard Clustering Comparison Measures |
arkdb | Archive and Unarchive Databases Using Flat Files |
arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
arnie | "Arnie" box office records 1982-2014 |
AROC | Covariate-Adjusted Receiver Operating Characteristic Curve Inference |
aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |
aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |
aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |
aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |
Arothron | Geometric Morphometrics Analyses |
ARpLMEC | Fitting Autoregressive Censored Linear Mixed-Effects Models |
ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |
arpr | Advanced R Pipes |
aRpsDCA | Arps Decline Curve Analysis in R |
arrangements | Fast Generators and Iterators for Permutations, Combinations and Partitions |
arrApply | Apply a Function to a Margin of an Array |
ArrayBin | Binarization of numeric data arrays |
arrayhelpers | Convenience Functions for Arrays |
ars | Adaptive Rejection Sampling |
arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |
ART | Aligned Rank Transform for Nonparametric Factorial Analysis |
artfima | ARTFIMA Model Estimation |
ARTIVA | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model |
ARTool | Aligned Rank Transform |
ARTP | Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product |
ARTP2 | Pathway and Gene-Level Association Test |
arules | Mining Association Rules and Frequent Itemsets |
arulesCBA | Classification Based on Association Rules |
arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |
arulesSequences | Mining Frequent Sequences |
arulesViz | Visualizing Association Rules and Frequent Itemsets |
aRxiv | Interface to the arXiv API |
asaur | Data Sets for "Applied Survival Analysis Using R"" |
asbio | A Collection of Statistical Tools for Biologists |
asciiruler | Render an ASCII Ruler |
asciiSetupReader | Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas) |
asd | Simulations for Adaptive Seamless Designs |
asdreader | Reading ASD Binary Files in R |
ASGS.foyer | Interface to the Australian Statistical Geography Standard |
ash | David Scott's ASH Routines |
ashr | Methods for Adaptive Shrinkage, using Empirical Bayes |
asht | Applied Statistical Hypothesis Tests |
AsioHeaders | 'Asio' C++ Header Files |
ASIP | Automated Satellite Image Processing |
askpass | Safe Password Entry for R, Git, and SSH |
aslib | Interface to the Algorithm Selection Benchmark Library |
ASMap | Linkage Map Construction using the MSTmap Algorithm |
asnipe | Animal Social Network Inference and Permutations for Ecologists |
aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |
ASPBay | Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data |
aSPC | An Adaptive Sum of Powered Correlation Test (aSPC) for Global Association Between Two Random Vectors |
aspect | A General Framework for Multivariate Analysis with Optimal Scaling |
aspi | Analysis of Symmetry of Parasitic Infections |
aSPU | Adaptive Sum of Powered Score Test |
asremlPlus | Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences |
ASSA | Applied Singular Spectrum Analysis (ASSA) |
AssayCorrector | Detection and Correction of Spatial Bias in HTS Screens |
assertable | Verbose Assertions for Tabular Data (Data.frames and Data.tables) |
assertive | Readable Check Functions to Ensure Code Integrity |
assertive.base | A Lightweight Core of the 'assertive' Package |
assertive.code | Assertions to Check Properties of Code |
assertive.data | Assertions to Check Properties of Data |
assertive.data.uk | Assertions to Check Properties of Strings |
assertive.data.us | Assertions to Check Properties of Strings |
assertive.datetimes | Assertions to Check Properties of Dates and Times |
assertive.files | Assertions to Check Properties of Files |
assertive.matrices | Assertions to Check Properties of Matrices |
assertive.models | Assertions to Check Properties of Models |
assertive.numbers | Assertions to Check Properties of Numbers |
assertive.properties | Assertions to Check Properties of Variables |
assertive.reflection | Assertions for Checking the State of R |
assertive.sets | Assertions to Check Properties of Sets |
assertive.strings | Assertions to Check Properties of Strings |
assertive.types | Assertions to Check Types of Variables |
assertr | Assertive Programming for R Analysis Pipelines |
assertthat | Easy Pre and Post Assertions |
AssetCorr | Estimating Asset Correlations from Default Data |
AssetPricing | Optimal Pricing of Assets with Fixed Expiry Date |
assignPOP | Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework |
assist | A Suite of R Functions Implementing Spline Smoothing Techniques |
ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |
AssocAFC | Allele Frequency Comparison |
assocInd | Implements New and Existing Association Indices for Constructing Animal Social Networks |
AssocTests | Genetic Association Studies |
assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |
AssotesteR | Statistical Tests for Genetic Association Studies |
AST | Age-Spatial-Temporal Model |
aster | Aster Models |
aster2 | Aster Models |
astro | Astronomy Functions, Tools and Routines |
astrochron | A Computational Tool for Astrochronology |
astrodatR | Astronomical Data |
astroFns | Astronomy: time and position functions, misc. utilities |
astrolibR | Astronomy Users Library |
astsa | Applied Statistical Time Series Analysis |
asus | Adaptive SURE Thresholding Using Side Information |
asVPC | Average Shifted Visual Predictive Checks |
asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |
asymmetry | Multidimensional Scaling of Asymmetric Data |
asympTest | A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples |
AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |
asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
atable | Create Tables for Reporting Clinical Trials |
ATE | Inference for Average Treatment Effects using Covariate Balancing |
AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |
atlantistools | Process and Visualise Output from Atlantis Models |
atlas | Stanford 'ATLAS' Search Engine API |
atmcmc | Automatically Tuned Markov Chain Monte Carlo |
ATmet | Advanced Tools for Metrology |
atmopt | Analysis-of-Marginal-Tail-Means |
AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |
ATR | Alternative Tree Representation |
aTSA | Alternative Time Series Analysis |
atsd | Support Querying Axibase Time-Series Database |
attempt | Easy Condition Handling |
attrCUSUM | Tools for Attribute VSI CUSUM Control Chart |
atus | American Time Use Survey Data |
AUC | Threshold independent performance measures for probabilistic classifiers |
aucm | AUC Maximization |
AUCRF | Variable Selection with Random Forest and the Area Under the Curve |
auctestr | Statistical Testing for AUC Data |
audio | Audio Interface for R |
audiolyzR | audiolyzR: Give your data a listen |
audit | Bounds for Accounting Populations |
auditor | Model Audit - Verification, Validation, and Error Analysis |
augmentedRCBD | Analysis of Augmented Randomised Complete Block Designs |
augSIMEX | Analysis of Data with Mixed Measurement Error and Misclassification in Covariates |
auk | eBird Data Extraction and Processing in R |
aurelius | Generates PFA Documents from R Code and Optionally Runs Them |
AurieLSHGaussian | Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections |
auRoc | Various Methods to Estimate the AUC |
AUtests | Approximate Unconditional and Permutation Tests |
auth0 | Secure Authentication in Shiny with Auth0 |
auto.pca | Automatic Variable Reduction Using Principal Component Analysis |
autoBagging | Learning to Rank Bagging Workflows with Metalearning |
autocogs | Automatic Cognostic Summaries |
AutoDeskR | An Interface to the 'AutoDesk' 'API' Platform |
autoencoder | Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |
autoFRK | Automatic Fixed Rank Kriging |
autoimage | Multiple Heat Maps for Projected Coordinates |
automagic | Automagically Document and Install Packages Necessary to Run R Code |
automap | Automatic interpolation package |
automl | Deep Learning with Metaheuristic |
AutoModel | Automated Hierarchical Multiple Regression with Assumptions Checking |
automultinomial | Models for Spatially Correlated Data |
autoplotly | Automatic Generation of Interactive Visualizations for Statistical Results |
Autoplotprotein | Development of Visualization Tools for Protein Sequence |
autopls | Partial Least Squares Regression with Backward Selection of Predictors |
AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |
AutoSEARCH | General-to-Specific (GETS) Modelling |
autoshiny | Automatic Transformation of an 'R' Function into a 'shiny' App |
AutoStepwiseGLM | Builds Stepwise GLMs via Train and Test Approach |
autothresholdr | An R Port of the 'ImageJ' Plugin 'Auto Threshold' |
autovarCore | Automated Vector Autoregression Models and Networks |
av | Working with Audio and Video |
available | Check if the Title of a Package is Available, Appropriate and Interesting |
averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |
aVirtualTwins | Adaptation of Virtual Twins Method from Jared Foster |
AWR | 'AWS' Java 'SDK' for R |
AWR.Athena | 'AWS' Athena 'DBI' Wrapper |
AWR.Kinesis | Amazon 'Kinesis' Consumer Application for Stream Processing |
AWR.KMS | A Simple Client to the 'AWS' Key Management Service |
aws | Adaptive Weights Smoothing |
aws.alexa | Client for the Amazon Alexa Web Information Services API |
aws.cloudtrail | AWS CloudTrail Client Package |
aws.comprehend | 'AWS Comprehend' Client Package |
aws.ec2metadata | Get EC2 Instance Metadata |
aws.iam | AWS IAM Client Package |
aws.kms | 'AWS Key Management Service' Client Package |
aws.lambda | AWS Lambda Client Package |
aws.polly | Client for AWS Polly |
aws.s3 | 'AWS S3' Client Package |
aws.ses | AWS SES Client Package |
aws.signature | Amazon Web Services Request Signatures |
aws.sns | AWS SNS Client Package |
aws.sqs | AWS SQS Client Package |
aws.transcribe | Client for 'AWS Transcribe' |
aws.translate | Client for 'AWS Translate' |
awsjavasdk | Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK |
awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' |
awspack | Amazon Web Services Bundle Package |
AzureContainers | Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure' |
AzureML | Interface with Azure Machine Learning Datasets, Experiments and Web Services |
AzureRMR | Interface to 'Azure Resource Manager' |
AzureStor | Storage Management in 'Azure' |
AzureVM | Virtual Machines in 'Azure' |
B2Z | Bayesian Two-Zone Model |
b6e6rl | Adaptive differential evolution, b6e6rl variant |
babar | Bayesian Bacterial Growth Curve Analysis in R |
babel | Ribosome Profiling Data Analysis |
BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data |
babynames | US Baby Names 1880-2017 |
BACA | Bubble Chart to Compare Biological Annotations by using DAVID |
BacArena | Modeling Framework for Cellular Communities in their Environments |
BACCO | Bayesian Analysis of Computer Code Output (BACCO) |
BACCT | Bayesian Augmented Control for Clinical Trials |
bacistool | Bayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials |
backblazer | Bindings to the Backblaze B2 API |
backpipe | Backward Pipe (Right-to-Left) Operator |
backports | Reimplementations of Functions Introduced Since R-3.0.0 |
backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |
backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |
BACprior | Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm |
bacr | Bayesian Adjustment for Confounding |
badgecreatr | Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme |
badger | Badge for R Package |
BAEssd | Bayesian Average Error approach to Sample Size Determination |
bagRboostR | Ensemble bagging and boosting classifiers |
bain | Bayes Factors for Informative Hypotheses |
bairt | Bayesian Analysis of Item Response Theory Models |
baitmet | Library Driven Compound Profiling in Gas Chromatography - Mass Spectrometry Data |
balance | Visualize Balances of Compositional Data |
BalanceCheck | Balance Check for Multiple Covariates in Matched Observational Studies |
BalancedSampling | Balanced and Spatially Balanced Sampling |
BALCONY | Better ALignment CONsensus analYsis |
BALD | Robust Loss Development Using MCMC |
Ball | Statistical Inference and Sure Independence Screening via Ball Statistics |
ballr | Access to Current and Historical Basketball Data |
BaM | Functions and Datasets for Books by Jeff Gill |
BAMBI | Bivariate Angular Mixture Models |
bamboo | Protein Secondary Structure Prediction Using the Bamboo Method |
bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |
bamlss | Bayesian Additive Models for Location Scale and Shape (and Beyond) |
BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |
BaMORC | Bayesian Model Optimized Reference Correction Method for Assigned and Unassigned Protein NMR Spectra |
bamp | Bayesian Age-Period-Cohort Modeling and Prediction |
bandit | Functions for simple A/B split test and multi-armed bandit analysis |
BANEScarparkinglite | Working with Car Parking Data for Bath and North East Somerset |
bang | Bayesian Analysis, No Gibbs |
bannerCommenter | Make Banner Comments with a Consistent Format |
BANOVA | Hierarchical Bayesian ANOVA Models |
banR | R Client for the BAN API |
banter | BioAcoustic EveNT ClassifiER |
banxicoR | Download Data from the Bank of Mexico |
bapred | Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |
BaPreStoPro | Bayesian Prediction of Stochastic Processes |
BarBorGradient | Function Minimum Approximator |
barcode | Barcode distribution plots |
baRcodeR | Labelling, Tracking, and Collecting Data from Biological Samples |
BarcodingR | Species Identification using DNA Barcodes |
Barnard | Barnard's Unconditional Test |
barsurf | Minimal Bar Plots and Surface Plots in 3D |
BART | Bayesian Additive Regression Trees |
bartMachine | Bayesian Additive Regression Trees |
bartMachineJARs | bartMachine JARs |
Barycenter | Regularized Wasserstein Distances and Barycenters |
BAS | Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling |
basad | Bayesian Variable Selection with Shrinking and Diffusing Priors |
base2grob | Convert Base Plot to 'grob' Object |
base64 | Base64 Encoder and Decoder |
base64enc | Tools for base64 encoding |
base64url | Fast and URL-Safe Base64 Encoder and Decoder |
baseballDBR | Sabermetrics and Advanced Baseball Statistics |
basefun | Infrastructure for Computing with Basis Functions |
baseline | Baseline Correction of Spectra |
basicMCMCplots | Trace Plots, Density Plots and Chain Comparisons for MCMC Samples |
basicspace | Recovering a Basic Space from Issue Scales |
basictabler | Construct Rich Tables for Output to 'HTML'/'Excel' |
basicTrendline | Add Trendline and Confidence Interval of Basic Regression Models to Plot |
BASiNET | Classification of RNA Sequences using Complex Network Theory |
BASIX | BASIX: An efficient C/C++ toolset for R |
BASS | Bayesian Adaptive Spline Surfaces |
BaSTA | Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |
bastah | Big Data Statistical Analysis for High-Dimensional Models |
BAT | Biodiversity Assessment Tools |
batade | HTML reports and so on |
batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |
BatchExperiments | Statistical Experiments on Batch Computing Clusters |
BatchGetSymbols | Downloads and Organizes Financial Data for Multiple Tickers |
BatchJobs | Batch Computing with R |
BatchMap | Software for the Creation of High Density Linkage Maps in Outcrossing Species |
batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |
batchtools | Tools for Computation on Batch Systems |
BaTFLED3D | Bayesian Tensor Factorization Linked to External Data |
batman | Convert Categorical Representations of Logicals to Actual Logicals |
batteryreduction | An R Package for Data Reduction by Battery Reduction |
BAwiR | Analysis of Basketball Data |
BayClone2 | Bayesian Feature Allocation Model for Tumor Heterogeneity |
bayesAB | Fast Bayesian Methods for AB Testing |
bayesammi | Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model |
BayesBD | Bayesian Inference for Image Boundaries |
BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |
bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |
bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |
bayesCL | Bayesian Inference on a GPU using OpenCL |
BayesCombo | Bayesian Evidence Combination |
BayesComm | Bayesian Community Ecology Analysis |
bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |
BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |
bayesCT | Simulation and Analysis of Adaptive Bayesian Clinical Trials |
BayesCTDesign | Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data |
BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |
bayesDccGarch | The Bayesian Dynamic Conditional Correlation GARCH Model |
BAYESDEF | Bayesian Analysis of DSD |
bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |
bayesdfa | Bayesian Dynamic Factor Analysis (DFA) with 'Stan' |
bayesdistreg | Bayesian Distribution Regression |
bayesDP | Tools for the Bayesian Discount Prior Function |
BayesESS | Determining Effective Sample Size |
BayesFactor | Computation of Bayes Factors for Common Designs |
BayesFM | Bayesian Inference for Factor Modeling |
bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |
BayesGESM | Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models |
BayesGOF | Bayesian Modeling via Frequentist Goodness-of-Fit |
BayesH | Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior |
BayesianAnimalTracker | Bayesian Melding of GPS and DR Path for Animal Tracking |
bayesianETAS | Bayesian Estimation of the ETAS Model for Earthquake Occurrences |
BayesianGLasso | Bayesian Graphical Lasso |
BayesianNetwork | Bayesian Network Modeling and Analysis |
BayesianTools | General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics |
bayesImageS | Bayesian Methods for Image Segmentation using a Potts Model |
BayesLCA | Bayesian Latent Class Analysis |
bayesLife | Bayesian Projection of Life Expectancy |
bayeslm | Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors |
bayesloglin | Bayesian Analysis of Contingency Table Data |
bayeslongitudinal | Adjust Longitudinal Regression Models Using Bayesian Methodology |
bayesm | Bayesian Inference for Marketing/Micro-Econometrics |
BayesMallows | Bayesian Preference Learning with the Mallows Rank Model |
BayesMAMS | Designing Bayesian Multi-Arm Multi-Stage Studies |
BayesMed | Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation |
bayesmeta | Bayesian Random-Effects Meta-Analysis |
bayesmix | Bayesian Mixture Models with JAGS |
BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |
BayesNetBP | Bayesian Network Belief Propagation |
BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |
BayesPieceHazSelect | Variable Selection in a Hierarchical Bayesian Model for a Hazard Function |
BayesPiecewiseICAR | Hierarchical Bayesian Model for a Hazard Function |
bayesplot | Plotting for Bayesian Models |
bayesPop | Probabilistic Population Projection |
bayespref | Hierarchical Bayesian analysis of ecological count data |
bayesQR | Bayesian Quantile Regression |
Bayesrel | Bayesian Reliability Estimation |
BayesRS | Bayes Factors for Hierarchical Linear Models with Continuous Predictors |
bayess | Bayesian Essentials with R |
BayesS5 | Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) |
BayesSAE | Bayesian Analysis of Small Area Estimation |
BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |
BayesSpec | Bayesian Spectral Analysis Techniques |
BayesSummaryStatLM | MCMC Sampling of Bayesian Linear Models via Summary Statistics |
bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
bayesTFR | Bayesian Fertility Projection |
BayesTree | Bayesian Additive Regression Trees |
BayesTreePrior | Bayesian Tree Prior Simulation |
BayesTwin | Bayesian Analysis of Item-Level Twin Data |
BayesValidate | BayesValidate Package |
BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |
BayesX | R Utilities Accompanying the Software Package BayesX |
BayesXsrc | R Package Distribution of the BayesX C++ Sources |
bayfoxr | Global Bayesian Foraminifera Core Top Calibration |
BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |
BayHaz | R Functions for Bayesian Hazard Rate Estimation |
BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |
BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating |
bayou | Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies |
BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |
baystability | Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) |
BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |
baytrends | Long Term Water Quality Trend Analysis |
bazar | Miscellaneous Basic Functions |
BB | Solving and Optimizing Large-Scale Nonlinear Systems |
bbefkr | Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |
bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |
BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |
BBI | Benthic Biotic Indices Calculation from Composition Data |
BBmisc | Miscellaneous Helper Functions for B. Bischl |
bbmle | Tools for General Maximum Likelihood Estimation |
BBMM | Brownian bridge movement model |
BBMV | Models for Continuous Traits Evolving in Macroevolutionary Landscapes of any Shape |
bbo | Biogeography-Based Optimization |
BBRecapture | Bayesian Behavioural Capture-Recapture Models |
bbw | Blocked Weighted Bootstrap |
bc3net | Gene Regulatory Network Inference with Bc3net |
BCA | Business and Customer Analytics |
bcaboot | Bias Corrected Bootstrap Confidence Intervals |
BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |
BCC1997 | Calculation of Option Prices Based on a Universal Solution |
BCDating | Business Cycle Dating and Plotting Tools |
BcDiag | Diagnostics Plots for Bicluster Data |
BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |
BCEA | Bayesian Cost Effectiveness Analysis |
BCEE | The Bayesian Causal Effect Estimation Algorithm |
BCellMA | B Cell Receptor Somatic Hyper Mutation Analysis |
bcf | Causal Inference for a Binary Treatment and Continuous Outcome using Bayesian Causal Forests |
bcgam | Bayesian Constrained Generalised Linear Models |
BCgee | Bias-Corrected Estimates for Generalized Linear Models for Dependent Data |
Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |
Bclim | Bayesian Palaeoclimate Reconstruction from Pollen Data |
bclust | Bayesian Hierarchical Clustering Using Spike and Slab Models |
BClustLonG | A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data |
bcmaps | Map Layers and Spatial Utilities for British Columbia |
bcp | Bayesian Analysis of Change Point Problems |
bcpa | Behavioral change point analysis of animal movement |
bcpmeta | Bayesian Multiple Changepoint Detection Using Metadata |
BCRA | Breast Cancer Risk Assessment |
bcRep | Advanced Analysis of B Cell Receptor Repertoire Data |
bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |
bcROCsurface | Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests |
bcrypt | 'Blowfish' Password Hashing Algorithm |
BCSub | A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) |
bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |
bda | Density Estimation for Grouped Data |
bdchecks | Biodiversity Data Checks |
bdDwC | Darwinizer: Darwin Core (DwC) Field Names Standardization |
bde | Bounded Density Estimation |
BDgraph | Bayesian Structure Learning in Graphical Models using Birth-Death MCMC |
bdlp | Transparent and Reproducible Artificial Data Generation |
bdots | Bootstrapped Differences of Time Series |
BDP2 | Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint |
bdpopt | Optimisation of Bayesian Decision Problems |
bdpv | Inference and design for predictive values in binary diagnostic tests |
bdribs | Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data |
bdscale | Remove Weekends and Holidays from ggplot2 Axes |
bdsmatrix | Routines for Block Diagonal Symmetric Matrices |
bdvis | Biodiversity Data Visualizations |
BDWreg | Bayesian Inference for Discrete Weibull Regression |
bdynsys | Bayesian Dynamical System Model |
BE | Bioequivalence Study Data Analysis |
bea.R | Bureau of Economic Analysis API |
BEACH | Biometric Exploratory Analysis Creation House |
beadarrayFilter | Bead filtering for Illumina bead arrays |
beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |
beadplexr | Analysis of Multiplex Cytometric Bead Assays |
beam | Fast Bayesian Inference in Large Gaussian Graphical Models |
beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |
beanz | Bayesian Analysis of Heterogeneous Treatment Effect |
beast | Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series |
BEDASSLE | Quantifies effects of geo/eco distance on genetic differentiation |
BEDMatrix | Extract Genotypes from a PLINK .bed File |
bedr | Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' |
beepr | Easily Play Notification Sounds on any Platform |
beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |
beezdemand | Behavioral Economic Easy Demand |
beginr | Functions for R Beginners |
behaviorchange | Tools for Behavior Change Researchers and Professionals |
behavr | Canonical Data Structure for Behavioural Data |
belex | Download Historical Data from the Belgrade Stock Exchange |
belg | Boltzmann Entropy of a Landscape Gradient |
bench | High Precision Timing of R Expressions |
benchden | 28 benchmark densities from Berlinet/Devroye (1994) |
Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |
benchmarkme | Crowd Sourced System Benchmarks |
benchmarkmeData | Data Set for the 'benchmarkme' Package |
benchr | High Precise Measurement of R Expressions Execution Time |
bender | Bender Client |
benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |
BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |
BENMMI | Benthic Multi-Metric Index |
bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |
benthos | Marine Benthic Ecosystem Analysis |
BEQI2 | Benthic Ecosystem Quality Index 2 |
ber | Batch Effects Removal |
Bergm | Bayesian Exponential Random Graph Models |
berryFunctions | Function Collection Related to Plotting and Hydrology |
BeSS | Best Subset Selection in Linear, Logistic and CoxPH Models |
Bessel | Bessel – Bessel Functions Computations and Approximations |
BEST | Bayesian Estimation Supersedes the t-Test |
bestglm | Best Subset GLM and Regression Utilities |
bestNormalize | Normalizing Transformation Functions |
BetaBit | Mini Games from Adventures of Beta and Bit |
betaboost | Boosting Beta Regression |
betacal | Beta Calibration |
betafam | Detecting rare variants for quantitative traits using nuclear families |
betalink | Beta-Diversity of Species Interactions |
betapart | Partitioning Beta Diversity into Turnover and Nestedness Components |
betareg | Beta Regression |
betas | Standardized Beta Coefficients |
betategarch | Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models |
bethel | Bethel's algorithm |
BETS | Brazilian Economic Time Series |
BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disease |
BeyondBenford | Compare the Goodness of Fit of Benford's and Blondeau Da Silva's Digit Distributions to a Given Dataset |
beyondWhittle | Bayesian Spectral Inference for Stationary Time Series |
bezier | Toolkit for Bezier Curves and Splines |
bfa | Bayesian Factor Analysis |
bfast | Breaks For Additive Season and Trend (BFAST) |
bfp | Bayesian Fractional Polynomials |
bfsl | Best-Fit Straight Line |
bfw | Bayesian Framework for Computational Modeling |
BGData | A Suite of Packages for Analysis of Big Genomic Data |
bgeva | Binary Generalized Extreme Value Additive Models |
BGGE | Bayesian Genomic Linear Models Applied to GE Genome Selection |
BGLR | Bayesian Generalized Linear Regression |
bgmfiles | Example BGM Files for the Atlantis Ecosystem Model |
bgmm | Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling |
BGPhazard | Markov Beta and Gamma Processes for Modeling Hazard Rates |
BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |
bgsmtr | Bayesian Group Sparse Multi-Task Regression |
BH | Boost C++ Header Files |
Bhat | General likelihood exploration |
BHH2 | Useful Functions for Box, Hunter and Hunter II |
bhm | Biomarker Threshold Models |
BHMSMAfMRI | Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI Data |
bhrcr | Bayesian Hierarchical Regression on Clearance Rates in the Presence of Lag and Tail Phases |
BHSBVAR | Structural Bayesian Vector Autoregression Models |
BHTSpack | Bayesian Multi-Plate High-Throughput Screening of Compounds |
biasbetareg | Bias correction of the parameter estimates of the beta regression model |
BiasedUrn | Biased Urn Model Distributions |
bib2df | Parse a BibTeX File to a data.frame |
BiBitR | R Wrapper for Java Implementation of BiBit |
bibliometrix | An R-Tool for Comprehensive Science Mapping Analysis |
BibPlots | Plot Functions for Use in Bibliometrics |
bibtex | Bibtex Parser |
biclust | BiCluster Algorithms |
BICORN | Integrative Inference of De Novo Cis-Regulatory Modules |
BiDAG | Bayesian Inference for Directed Acyclic Graphs (BiDAG) |
BiDimRegression | Calculates the Bidimensional Regression Between Two 2D Configurations |
BIEN | Tools for Accessing the Botanical Information and Ecology Network Database |
bife | Binary Choice Models with Fixed Effects |
BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |
BiG | Bayesian Aggregation in Genomic Applications |
bigalgebra | BLAS routines for native R matrices and big.matrix objects |
biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |
bigchess | Read, Manipulate and Explore Chess PGN Files |
bigdatadist | Distances for Machine Learning and Statistics in the Context of Big Data |
BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |
bigGP | Distributed Gaussian Process Calculations |
bigIntegerAlgos | R Tool for Factoring Big Integers |
bigKRLS | Optimized Kernel Regularized Least Squares |
BIGL | Biochemically Intuitive Generalized Loewe Model |
biglars | Scalable Least-Angle Regression and Lasso |
biglasso | Extending Lasso Model Fitting to Big Data |
bigleaf | Physical and Physiological Ecosystem Properties from Eddy Covariance Data |
biglm | bounded memory linear and generalized linear models |
biglmm | Bounded Memory Linear and Generalized Linear Models |
bigMap | Big Data Mapping |
bigmatch | Making Optimal Matching Size-Scalable Using Optimal Calipers |
bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |
bigmemory.sri | A shared resource interface for Bigmemory Project packages |
bigml | Bindings for the BigML API |
bigQueryR | Interface with Google BigQuery with Shiny Compatibility |
BigQuic | Big Quadratic Inverse Covariance Estimation |
bigreadr | Read Large Text Files |
bigReg | Generalized Linear Models (GLM) for Large Data Sets |
bigrquery | An Interface to Google's 'BigQuery' 'API' |
BigSEM | Constructing Large Systems of Structural Equations |
bigsplines | Smoothing Splines for Large Samples |
bigstatsr | Statistical Tools for Filebacked Big Matrices |
bigstep | Stepwise Selection for Large Data Sets |
bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |
bigtcr | Nonparametric Analysis of Bivariate Gap Time with Competing Risks |
bigtime | Sparse Estimation of Large Time Series Models |
BigTSP | Top Scoring Pair based methods for classification |
BigVAR | Dimension Reduction Methods for Multivariate Time Series |
bikedata | Download and Aggregate Data from Public Hire Bicycle Systems |
bikeshare14 | Bay Area Bike Share Trips in 2014 |
bild | BInary Longitudinal Data |
billboard | Contains Data of Billboard Hot 100 Songs |
billboarder | Create Interactive Chart with the JavaScript 'Billboard' Library |
bimetallic | Power for SNP analyses using silver standard cases |
bimixt | Estimates Mixture Models for Case-Control Data |
BimodalIndex | The Bimodality Index |
Binarize | Binarization of One-Dimensional Data |
BinarybalancedCut | Threshold Cut Point of Probability for a Binary Classifier Model |
BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |
BinaryEPPM | Mean and Variance Modeling of Binary Data |
binaryGP | Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response |
binaryLogic | Binary Logic |
binb | 'binb' is not 'Beamer' |
BINCOR | Estimate the Correlation Between Two Irregular Time Series |
binda | Multi-Class Discriminant Analysis using Binary Predictors |
bindata | Generation of Artificial Binary Data |
bindr | Parametrized Active Bindings |
bindrcpp | An 'Rcpp' Interface to Active Bindings |
binequality | Methods for Analyzing Binned Income Data |
binford | Binford's Hunter-Gatherer Data |
bingat | Binary Graph Analysis Tools |
binGroup | Evaluation and Experimental Design for Binomial Group Testing |
binhf | Haar-Fisz Functions for Binomial Data |
binman | A Binary Download Manager |
binMto | Many-to-One Comparisons of Proportions |
binnednp | Nonparametric Estimation for Interval-Grouped Data |
binneR | Spectral Processing for High Resolution Flow Infusion Mass Spectrometry |
BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |
BinNor | Simultaneous Generation of Multivariate Binary and Normal Variates |
binom | Binomial Confidence Intervals For Several Parameterizations |
binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |
binomlogit | Efficient MCMC for Binomial Logit Models |
binomSamSize | Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling |
BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |
BinQuasi | Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood |
binr | Cut Numeric Values into Evenly Distributed Groups |
binseqtest | Exact Binary Sequential Designs and Analysis |
binsmooth | Generate PDFs and CDFs from Binned Data |
binst | Data Preprocessing, Binning for Classification and Regression |
bio.infer | Predict environmental conditions from biological observations |
bio3d | Biological Structure Analysis |
bioacoustics | Analyse Audio Recordings and Automatically Extract Animal Vocalizations |
BioCircos | Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' |
BiocManager | Access the Bioconductor Project Package Repository |
Biocomb | Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |
Biodem | Biodemography Functions |
BiodiversityR | Package for Community Ecology and Suitability Analysis |
BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |
biofiles | An Interface for GenBank/GenPept Flat Files |
BioFTF | Biodiversity Assessment Using Functional Tools |
biogas | Process Biogas Data and Predict Biogas Production |
biogeo | Point Data Quality Assessment and Coordinate Conversion |
biogram | N-Gram Analysis of Biological Sequences |
Biograph | Explore Life Histories |
Bioi | Biological Image Analysis |
bioimagetools | Tools for Microscopy Imaging |
bioinactivation | Simulation of Dynamic Microbial Inactivation |
BioInstaller | Integrator of Bioinformatics Resources |
biolink | Create Hyperlinks to Biological Databases and Resources |
Biolinv | Modelling and Forecasting Biological Invasions |
BIOM.utils | Utilities for the BIOM (Biological Observation Matrix) Format |
BioMark | Find Biomarkers in Two-Class Discrimination Problems |
biomartr | Genomic Data Retrieval |
BIOMASS | Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests |
BioMedR | Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions |
biomod2 | Ensemble Platform for Species Distribution Modeling |
bionetdata | Biological and chemical data networks |
bioOED | Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation |
BioPET | Biomarker Prognostic Enrichment Tool |
bioplots | Visualization of Overlapping Results with Heatmap |
bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |
bioRad | Biological Analysis and Visualization of Weather Radar Data |
Bios2cor | From Biological Sequences and Simulations to Correlation Analysis |
bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |
bioset | Convert a Matrix of Raw Values into Nice and Tidy Data |
biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |
biospear | Biomarker Selection in Penalized Regression Models |
biostat3 | Utility Functions, Datasets and Extended Examples for Survival Analysis |
BioStatR | Initiation à La Statistique Avec R |
biotic | Calculation of Freshwater Biotic Indices |
biotools | Tools for Biometry and Applied Statistics in Agricultural Science |
bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |
bipartiteD3 | Interactive Bipartite Graphs |
biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |
BiplotGUI | Interactive Biplots in R |
BiProbitPartial | Bivariate Probit with Partial Observability |
birdring | Methods to Analyse Ring Re-Encounter Data |
birk | MA Birk's Functions |
birtr | The R Package for "The Basics of Item Response Theory Using R" |
BIS | Programmatic Access to Bank for International Settlements Data |
bisect | Estimating Cell Type Composition from Methylation Sequencing Data |
bisectr | Tools to find bad commits with git bisect |
BiSEp | Toolkit to Identify Candidate Synthetic Lethality |
bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |
BisRNA | Analysis of RNA Cytosine-5 Methylation |
bit | A Class for Vectors of 1-Bit Booleans |
bit64 | A S3 Class for Vectors of 64bit Integers |
bitops | Bitwise Operations |
BiTrinA | Binarization and Trinarization of One-Dimensional Data |
bitrugs | Bayesian Inference of Transmission Routes Using Genome Sequences |
bitsqueezr | Quantize Floating-Point Numbers for Improved Compressibility |
biva | Business Intelligence |
bivariate | Bivariate Probability Distributions |
Bivariate.Pareto | Bivariate Pareto Models |
BivarP | Estimating the Parameters of Some Bivariate Distributions |
bivarRIpower | Sample size calculations for bivariate longitudinal data |
BivGeo | Basu-Dhar Bivariate Geometric Distribution |
bivgeom | Roy's Bivariate Geometric Distribution |
BivRec | Bivariate Alternating Recurrent Event Data Analysis |
BivRegBLS | Tolerance Intervals and Errors-in-Variables Regressions in Method Comparison Studies |
bivrp | Bivariate Residual Plots with Simulation Polygons |
BivUnifBin | Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data |
biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |
biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |
bizdays | Business Days Calculations and Utilities |
bjscrapeR | An API Wrapper for the Bureau of Justice Statistics (BJS) |
bkmr | Bayesian Kernel Machine Regression |
BKPC | Bayesian Kernel Projection Classifier |
blackbox | Black Box Optimization and Exploration of Parameter Space |
BlakerCI | Blaker's Binomial Confidence Limits |
BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |
blandr | Bland-Altman Method Comparison |
blastula | Easily Send HTML Email Messages |
blatr | Send Emails Using 'Blat' for Windows |
Blaunet | Calculate and Analyze Blau Status for (Covert) Organizations |
blavaan | Bayesian Latent Variable Analysis |
BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |
blendedLink | A New Link Function that Blends Two Specified Link Functions |
blender | Analyze biotic homogenization of landscapes |
Blendstat | Joint Analysis of Experiments with Mixtures and Random Effects |
blin | Bipartite Longitudinal Influence Network (BLIN) Estimation |
blink | Record Linkage for Empirically Motivated Priors |
blkbox | Data Exploration with Multiple Machine Learning Algorithms |
blm | Binomial linear and linear-expit regression |
blme | Bayesian Linear Mixed-Effects Models |
blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |
BLModel | Black-Litterman Posterior Distribution |
blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |
blockcluster | Co-clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |
BlockCov | Estimation of Large Block Covariance Matrices |
BlockFeST | Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation |
blockForest | Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data |
blockingChallenge | Create Blocks or Strata which are Similar Within |
blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |
BlockMessage | Creates strings that show a text message in 8 by 8 block letters |
blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |
blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |
blockrand | Randomization for block random clinical trials |
blocksdesign | Nested and Crossed Block Designs for Factorial, Fractional Factorial and Unstructured Treatment Sets |
blockseg | Two Dimensional Change-Points Detection |
blockTools | Block, Assign, and Diagnose Potential Interference in Randomized Experiments |
blogdown | Create Blogs and Websites with R Markdown |
BLOQ | Impute and Analyze Data with Observations Below the Limit of Quantification |
blorr | Tools for Developing Binary Logistic Regression Models |
BLPestimatoR | Performs a BLP Demand Estimation |
BLR | Bayesian Linear Regression |
BLRPM | Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model |
blsAPI | Request Data from the U.S. Bureau of Labor Statistics API |
blscrapeR | An API Wrapper for the Bureau of Labor Statistics (BLS) |
BLSM | Bayesian Latent Space Model |
BMA | Bayesian Model Averaging |
BMAmevt | Multivariate Extremes: Bayesian Estimation of the Spectral Measure |
bmd | Benchmark dose analysis for dose-response data |
bmem | Mediation analysis with missing data using bootstrap |
bmeta | Bayesian Meta-Analysis and Meta-Regression |
BMhyb | Hybrid Trait Evolution under Brownian Motion |
BMhyd | PCM for Hybridization |
BMisc | Miscellaneous Functions for Panel Data, Quantiles, and Printing Results |
Bmix | Bayesian Sampling for Stick-Breaking Mixtures |
bmixture | Bayesian Estimation for Finite Mixture of Distributions |
bmk | MCMC diagnostics package |
bmlm | Bayesian Multilevel Mediation |
bmmix | Bayesian multinomial mixture |
bmotif | Counting Motifs in Bipartite Networks |
bmp | Read Windows Bitmap (BMP) Images |
BMRBr | 'BMRB' File Downloader |
bmrm | Bundle Methods for Regularized Risk Minimization Package |
BMRV | Bayesian Models for Rare Variant Association Analysis |
BMS | Bayesian Model Averaging Library |
BMSC | Bayesian Model Selection under Constraints |
BMT | The BMT Distribution |
BMTME | Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis |
bnclassify | Learning Discrete Bayesian Network Classifiers from Data |
BNDataGenerator | Data Generator based on Bayesian Network Model |
bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |
BNN | Bayesian Neural Network for High-Dimensional Nonlinear Variable Selection |
bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |
bnormnlr | Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models |
BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |
BNPMediation | Bayesian Nonparametric Method for Mediation |
BNPMIXcluster | Bayesian Nonparametric Model for Clustering with Mixed Scale Variables |
bnpmr | Bayesian Monotonic Nonparametric Regression |
bnpsd | Simulate Genotypes from the BN-PSD Admixture Model |
BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |
BNSL | Bayesian Network Structure Learning |
BNSP | Bayesian Non- And Semi-Parametric Model Fitting |
bnspatial | Spatial Implementation of Bayesian Networks and Mapping |
bnstruct | Bayesian Network Structure Learning from Data with Missing Values |
bnviewer | Interactive Visualization of Bayesian Networks |
boa | Bayesian Output Analysis Program (BOA) for MCMC |
BoardGames | Board Games and Tools for Building Board Games |
bodenmiller | Profilling of Peripheral Blood Mononuclear Cells using CyTOF |
BOG | Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions |
boilerpipeR | Interface to the Boilerpipe Java Library |
BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |
bold | Interface to Bold Systems API |
Bolstad | Functions for Elementary Bayesian Inference |
Bolstad2 | Bolstad functions |
BoltzMM | Boltzmann Machines with MM Algorithms |
bomrang | Australian Government Bureau of Meteorology (BOM) Data from R |
BondValuation | Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions |
BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |
bookdown | Authoring Books and Technical Documents with R Markdown |
bookdownplus | Generate Assorted Books and Documents with R 'bookdown' Package |
BoolFilter | Optimal Estimation of Partially Observed Boolean Dynamical Systems |
BoolNet | Construction, Simulation and Analysis of Boolean Networks |
Boom | Bayesian Object Oriented Modeling |
BoomSpikeSlab | MCMC for Spike and Slab Regression |
boostmtree | Boosted Multivariate Trees for Longitudinal Data |
boostr | A modular framework to bag or boost any estimation procedure |
boot | Bootstrap Functions (Originally by Angelo Canty for S) |
bootcluster | Bootstrapping Estimates of Clustering Stability |
bootES | Bootstrap Effect Sizes |
bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |
BootMRMR | Bootstrap-MRMR Technique for Informative Gene Selection |
bootnet | Bootstrap Methods for Various Network Estimation Routines |
BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
bootRes | Bootstrapped Response and Correlation Functions |
bootruin | A Bootstrap Test for the Probability of Ruin in the Classical Risk Process |
bootspecdens | Testing equality of spectral densities |
bootsPLS | Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification |
bootStepAIC | Bootstrap stepAIC |
bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
bootstrapFP | Bootstrap Algorithms for Finite Population Inference |
BootstrapQTL | Bootstrap cis-QTL Method that Corrects for the Winner's Curse |
bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |
boottol | Bootstrap Tolerance Levels for Credit Scoring Validation Statistics |
BootValidation | Adjusting for Optimism in 'glmnet' Regression using Bootstrapping |
BootWPTOS | Test Stationarity using Bootstrap Wavelet Packet Tests |
bor | Transforming Behavioral Observation Records into Data Matrices |
boral | Bayesian Ordination and Regression AnaLysis |
Boruta | Wrapper Algorithm for All Relevant Feature Selection |
BosonSampling | Classical Boson Sampling |
BoSSA | A Bunch of Structure and Sequence Analysis |
bossMaps | Convert Binary Species Range Maps into Continuous Surfaces Based on Distance to Range Edge |
boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |
BoutrosLab.plotting.general | Create Publication-Quality Plots |
boxcoxmix | Box-Cox-Type Transformations for Linear and Logistic Models with Random Effects |
boxoffice | Downloads Box Office Information for Given Dates |
boxplotdbl | Double Box Plot for Two-Axes Correlation |
boxr | Interface for the 'Box.com API' |
bpa | Basic Pattern Analysis |
bpbounds | Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions |
bpca | Biplot of Multivariate Data Based on Principal Components Analysis |
bpcp | Beta Product Confidence Procedure for Right Censored Data |
bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |
BPEC | Bayesian Phylogeographic and Ecological Clustering |
bpkde | Back-Projected Kernel Density Estimation |
BPM | Bayesian Purity Model to Estimate Tumor Purity |
bpnreg | Bayesian Projected Normal Regression Models for Circular Data |
bpp | Computations Around Bayesian Predictive Power |
bqtl | Bayesian QTL Mapping Toolkit |
BradleyTerry2 | Bradley-Terry Models |
BradleyTerryScalable | Fits the Bradley-Terry Model to Potentially Large and Sparse Networks of Comparison Data |
braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |
braidrm | Fitting Dose Response with the BRAID Combined Action Model |
BrailleR | Improved Access for Blind Users |
brainGraph | Graph Theory Analysis of Brain MRI Data |
brainKCCA | Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis |
brainR | Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging |
brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |
Branching | Simulation and Estimation for Branching Processes |
brandwatchR | 'Brandwatch' API to R |
brant | Test for Parallel Regression Assumption |
braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |
brazilmaps | Brazilian Maps from Different Geographic Levels |
brea | Bayesian Recurrent Event Analysis |
breakage | SICM pipette tip geometry estimation |
breakaway | Species Richness Estimation and Modeling |
breakDown | Model Agnostic Explainers for Individual Predictions |
breakfast | Multiple Change-Point Detection and Segmentation |
breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |
breathtestcore | Core Functions to Read and Fit 13c Time Series from Breath Tests |
breathteststan | Stan-Based Fit to Gastric Emptying Curves |
BreedingSchemeLanguage | Describe and Simulate Breeding Schemes |
bReeze | Functions for Wind Resource Assessment |
BRETIGEA | Brain Cell Type Specific Gene Expression Analysis |
brew | Templating Framework for Report Generation |
brglm | Bias Reduction in Binomial-Response Generalized Linear Models |
brglm2 | Bias Reduction in Generalized Linear Models |
bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |
bridger2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data |
bridgesampling | Bridge Sampling for Marginal Likelihoods and Bayes Factors |
BRISC | Fast Inference for Large Spatial Datasets using BRISC |
briskaR | Biological Risk Assessment |
brlrmr | Bias Reduction with Missing Binary Response |
brm | Binary Regression Model |
brms | Bayesian Regression Models using 'Stan' |
brnn | Bayesian Regularization for Feed-Forward Neural Networks |
Brobdingnag | Very Large Numbers in R |
broman | Karl Broman's R Code |
broom | Convert Statistical Analysis Objects into Tidy Tibbles |
broom.mixed | Tidying Methods for Mixed Models |
brotli | A Compression Format Optimized for the Web |
BrownDog | Brown Dog R Interface |
Brq | Bayesian Analysis of Quantile Regression Models |
brr | Bayesian Inference on the Ratio of Two Poisson Rates |
brranching | Fetch 'Phylogenies' from Many Sources |
brt | Biological Relevance Testing |
BRugs | Interface to the 'OpenBUGS' MCMC Software |
Brundle | Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data |
bs4Dash | A 'Bootstrap 4' Version of 'shinydashboard' |
BSagri | Safety Assessment in Agricultural Field Trials |
bsam | Bayesian State-Space Models for Animal Movement |
bsamGP | Bayesian Spectral Analysis Models using Gaussian Process Priors |
BSDA | Basic Statistics and Data Analysis |
bsearchtools | Binary Search Tools |
BSGS | Bayesian Sparse Group Selection |
BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |
bshazard | Nonparametric Smoothing of the Hazard Function |
BSL | Bayesian Synthetic Likelihood |
BsMD | Bayes Screening and Model Discrimination |
BSPADATA | Bayesian Proposal to Fit Spatial Econometric Models |
bspec | Bayesian Spectral Inference |
bsplinePsd | Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors |
bsplus | Adds Functionality to the R Markdown + Shiny Bootstrap Framework |
bspmma | Bayesian Semiparametric Models for Meta-Analysis |
BSquare | Bayesian Simultaneous Quantile Regression |
BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |
bssm | Bayesian Inference of Non-Linear and Non-Gaussian State Space Models |
bssn | Birnbaum-Saunders Model Based on Skew-Normal Distribution |
bst | Gradient Boosting |
bsts | Bayesian Structural Time Series |
btb | Beyond the Border - Kernel Density Estimation for Urban Geography |
BTdecayLasso | Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso |
btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |
BTLLasso | Modelling Heterogeneity in Paired Comparison Data |
BTM | Biterm Topic Models for Short Text |
BTR | Training and Analysing Asynchronous Boolean Models |
BTSPAS | Bayesian Time-Strat. Population Analysis |
BTYD | Implementing Buy 'Til You Die Models |
BTYDplus | Probabilistic Models for Assessing and Predicting your Customer Base |
bucky | Bucky's Archive for Data Analysis in the Social Sciences |
BUCSS | Bias and Uncertainty Corrected Sample Size |
Buddle | A Deep Learning Package for Statistical Classification Analysis |
bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |
bulletr | Algorithms for Matching Bullet Lands |
BullsEyeR | Topic Modelling |
bullwhipgame | Bullwhip Effect Demo in Shiny |
bunchr | Analyze Bunching in a Kink or Notch Setting |
bundesligR | All Final Tables of the Bundesliga |
bupaR | Business Process Analysis in R |
burnr | Fire-History Analysis in R |
BurStFin | Burns Statistics Financial |
BurStMisc | Burns Statistics Miscellaneous |
bursts | Markov model for bursty behavior in streams |
busdater | Standard Date Calculations for Business |
BusinessDuration | Calculates Business Duration Between Two Dates |
BuyseTest | Generalized Pairwise Comparisons |
bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |
bvenn | A Simple alternative to proportional Venn diagrams |
bvls | The Stark-Parker algorithm for bounded-variable least squares |
bvpSolve | Solvers for Boundary Value Problems of Differential Equations |
BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |
BVSNLP | Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors |
bwd | Backward Procedure for Change-Point Detection |
bWGR | Bayesian Whole-Genome Regression |
BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |
bytescircle | Statistics About Bytes Contained in a File as a Circle Plot |
c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |
c14bazAAR | Download and Prepare C14 Dates from Different Source Databases |
c212 | Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |
c2c | Compare Two Classifications or Clustering Solutions of Varying Structure |
c3 | 'C3.js' Chart Library |
c3net | Infering large-scale gene networks with C3NET |
C443 | See a Forest for the Trees |
C50 | C5.0 Decision Trees and Rule-Based Models |
ca | Simple, Multiple and Joint Correspondence Analysis |
CA3variants | Three-Way Correspondence Analysis Variants |
cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis |
cacIRT | Classification Accuracy and Consistency under Item Response Theory |
CaDENCE | Conditional Density Estimation Network Construction and Evaluation |
CADFtest | A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests |
CADStat | Provides a GUI to Several Statistical Methods |
caesar | Encrypts and Decrypts Strings |
caffsim | Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model |
cAIC4 | Conditional Akaike Information Criterion for 'lme4' |
CAinterprTools | Graphical Aid in Correspondence Analysis Interpretation and Significance Testings |
Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |
cairoDevice | Embeddable Cairo Graphics Device Driver |
CAISEr | Comparison of Algorithms with Iterative Sample Size Estimation |
calACS | Calculations for All Common Subsequences |
Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |
calendar | Create, Read, Write, and Work with 'iCalander' Files, Calendars and Scheduling Data |
CALF | Coarse Approximation Linear Function |
CALIBERrfimpute | Multiple Imputation Using MICE and Random Forest |
calibrar | Automated Parameter Estimation for Complex (Ecological) Models |
calibrate | Calibration of Scatterplot and Biplot Axes |
calibrateBinary | Calibration for Computer Experiments with Binary Responses |
CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |
calibrator | Bayesian calibration of complex computer codes |
CalibratR | Mapping ML Scores to Calibrated Predictions |
CaliCo | Code Calibration in a Bayesian Framework |
callr | Call R from R |
calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |
calpassapi | R Interface to Access CalPASS API |
CalSim | The Calibration Simplex |
CAM | Causal Additive Model (CAM) |
CAMAN | Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |
camsRad | Client for CAMS Radiation Service |
caMST | Mixed Computerized Adaptive Multistage Testing |
camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |
cancensus | Canadian Census Data and Geography from the 'CensusMapper' API |
cancerGI | Analyses of Cancer Gene Interaction |
cancerTiming | Estimation of Temporal Ordering of Cancer Abnormalities |
candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |
Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |
canprot | Chemical Composition of Differential Protein Expression |
cansim | Accessing Statistics Canada Data Table and Vectors |
CANSIM2R | Directly Extracts Complete CANSIM Data Tables |
canvasXpress | Visualization Package for CanvasXpress in R |
cap | Covariate Assisted Principal (CAP) Regression for Covariance Matrix Outcomes |
cape | Combined Analysis of Pleiotropy and Epistasis |
caper | Comparative Analyses of Phylogenetics and Evolution in R |
capm | Companion Animal Population Management |
capn | Capital Asset Pricing for Nature |
captioner | Numbers Figures and Creates Simple Captions |
captr | Client for the Captricity API |
capushe | CAlibrating Penalities Using Slope HEuristics |
capwire | Estimates population size from non-invasive sampling |
car | Companion to Applied Regression |
caRamel | Automatic Calibration by Evolutionary Multi Objective Algorithm |
CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |
CARBayesdata | Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |
CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |
carbonate | Interact with 'carbon.js' |
carcass | Estimation of the Number of Fatalities from Carcass Searches |
carData | Companion to Applied Regression Data Sets |
cardidates | Identification of Cardinal Dates in Ecological Time Series |
cardioModel | Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies |
care | High-Dimensional Regression and CAR Score Variable Selection |
CARE1 | Statistical package for population size estimation in capture-recapture models |
careless | Procedures for Computing Indices of Careless Responding |
caret | Classification and Regression Training |
caretEnsemble | Ensembles of Caret Models |
carfima | Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data |
caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |
CarletonStats | Functions for Statistics Classes at Carleton College |
CARLIT | Ecological Quality Ratios Calculation and Plot |
caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |
carpenter | Build Common Tables of Summary Statistics for Reports |
caRpools | CRISPR AnalyzeR for Pooled CRISPR Screens |
CARrampsOcl | Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |
carrier | Isolate Functions for Remote Execution |
CARRoT | Predicting Categorical and Continuous Outcomes Using One in Ten Rule |
CARS | Covariate Assisted Ranking and Screening for Large-Scale Two-Sample Inference |
carSurv | Correlation-Adjusted Regression Survival (CARS) Scores |
cartogram | Create Cartograms with R |
cartography | Thematic Cartography |
cartools | Tools for Understanding Highway Performance |
carx | Censored Autoregressive Model with Exogenous Covariates |
Cascade | Selection, Reverse-Engineering and Prediction in Cascade Networks |
CascadeData | Experimental Data of Cascade Experiments in Genomics |
caschrono | S<e9>ries Temporelles Avec R |
casebase | Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression |
CaseBasedReasoning | Case-Based Reasoning |
caseMatch | Identify Similar Cases for Qualitative Case Studies |
casino | Play Casino Games |
CASMAP | Detection of Statistically Significant Combinations of SNPs in Association Mapping |
CAST | 'caret' Applications for Spatial-Temporal Models |
castor | Efficient Phylogenetics on Large Trees |
cat | Analysis of categorical-variable datasets with missing values |
catch | Covariate-Adjusted Tensor Classification in High-Dimensions |
catchr | Taking the Pain Out of Catching and Handling Conditions |
catcont | Test, Identify, Select and Mutate Categorical or Continuous Values |
catdap | Categorical Data Analysis Program Package |
catdata | Categorical Data |
CatDyn | Fishery Stock Assessment by Catch Dynamics Models |
cate | High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |
catenary | Fits a Catenary to Given Points |
CatEncoders | Encoders for Categorical Variables |
CateSelection | Categorical Variable Selection Methods |
catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |
CATkit | Chronomics Analysis Toolkit (CAT): Periodicity Analysis |
catlearn | Formal Psychological Models of Categorization and Learning |
catmap | Case-Control and TDT Meta-Analysis Package |
catnet | Categorical Bayesian Network Inference |
caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |
CatPredi | Optimal Categorisation of Continuous Variables in Prediction Models |
catR | Generation of IRT Response Patterns under Computerized Adaptive Testing |
catseyes | Create Catseye Plots Illustrating the Normal Distribution of the Means |
catspec | Special models for categorical variables |
catSurv | Computerized Adaptive Testing for Survey Research |
CATT | The Cochran-Armitage Trend Test |
CATTexact | Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test |
cattonum | Encode Categorical Features |
causaldrf | Tools for Estimating Causal Dose Response Functions |
causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |
CausalFX | Methods for Estimating Causal Effects from Observational Data |
CausalGAM | Estimation of Causal Effects with Generalized Additive Models |
CausalImpact | Inferring Causal Effects using Bayesian Structural Time-Series Models |
causalMGM | Causal Learning of Mixed Graphical Models |
causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |
causalweight | Estimation Methods for Causal Inference Based on Inverse Probability Weighting |
Causata | Analysis utilities for binary classification and Causata users |
CAvariants | Correspondence Analysis Variants |
CB2 | CRISPR Pooled Screen Analysis using Beta-Binomial Test |
cba | Clustering for Business Analytics |
cbanalysis | Coffee Break Descriptive Analysis |
cbar | Contextual Bayesian Anomaly Detection in R |
CBCgrps | Compare Baseline Characteristics Between Groups |
CBDA | Compressive Big Data Analytics |
cbinom | Continuous Analog of a Binomial Distribution |
cbird | Clustering of Multivariate Binary Data with Dimension Reduction via L1-Regularized Likelihood Maximization |
CBPS | Covariate Balancing Propensity Score |
cbsem | Simulation, Estimation and Segmentation of Composite Based Structural Equation Models |
cbsodataR | Statistics Netherlands (CBS) Open Data API Client |
CBT | Confidence Bound Target Algorithm |
CCA | Canonical correlation analysis |
ccafs | Client for 'CCAFS' 'GCM' Data |
CCAGFA | Bayesian Canonical Correlation Analysis and Group Factor Analysis |
ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |
cccd | Class Cover Catch Digraphs |
ccChooser | Developing a core collections |
cccp | Cone Constrained Convex Problems |
cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |
ccda | Combined Cluster and Discriminant Analysis |
ccdrAlgorithm | CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks |
ccfa | Continuous Counterfactual Analysis |
ccgarch | Conditional Correlation GARCH models |
cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |
cclust | Convex Clustering Methods and Clustering Indexes |
CCM | Correlation Classification Method |
ccmm | Compositional Mediation Model |
CCMnet | Simulate Congruence Class Model for Networks |
CCP | Significance Tests for Canonical Correlation Analysis (CCA) |
CCpop | One and two locus GWAS of binary phenotype with case-control-population design |
ccRemover | Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data |
cctools | Tools for the Continuous Convolution Trick in Nonparametric Estimation |
CCTpack | Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications |
cdata | Fluid Data Transformations |
cdb | Reading and Writing Constant DataBases |
cdcfluview | Retrieve Flu Season Data from the United States Centers for Disease Control and Prevention ('CDC') 'FluView' Portal |
cdcsis | Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference |
cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |
CDFt | Statistical downscaling through CDF-transform |
CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |
cdlTools | Tools to Download and Work with USDA Cropscape Data |
CDM | Cognitive Diagnosis Modeling |
CDNmoney | Components of Canadian Monetary and Credit Aggregates |
cdom | R Functions to Model CDOM Spectra |
cdparcoord | Top Frequency-Based Parallel Coordinates |
CDROM | Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |
cds | Constrained Dual Scaling for Detecting Response Styles |
CDVine | Statistical Inference of C- And D-Vine Copulas |
CDVineCopulaConditional | Sampling from Conditional C- and D-Vine Copulas |
CEC | Cross-Entropy Clustering |
cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |
cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |
ceg | Chain Event Graph |
CEGO | Combinatorial Efficient Global Optimization |
celestial | Collection of Common Astronomical Conversion Routines and Functions |
cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |
cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |
cellWise | Analyzing Data with Cellwise Outliers |
cem | Coarsened Exact Matching |
CENFA | Climate and Ecological Niche Factor Analysis |
cenGAM | Censored Regression with Smooth Terms |
censCov | Linear Regression with a Randomly Censored Covariate |
CensMixReg | Censored Linear Mixture Regression Models |
censNID | censored NID samples |
censorcopula | Estimate Parameter of Bivariate Copula |
censReg | Censored Regression (Tobit) Models |
CensRegMod | Fits Normal and Student-t Censored Regression Model |
CensSpatial | Censored Spatial Models |
Census2016 | Data from the Australian Census 2016 |
censusapi | Retrieve Data from the Census APIs |
censusGeography | Changes United States Census Geographic Code into Name of Location |
censusr | Collect Data from the Census API |
censys | Tools to Query the 'Censys' API |
centiserve | Find Graph Centrality Indices |
centralplot | Show the Strength of Relationships Between Centre and Peripheral Items |
cents | Censored time series |
CEoptim | Cross-Entropy R Package for Optimization |
CePa | Centrality-Based Pathway Enrichment |
CepLDA | Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability |
cepp | Context Driven Exploratory Projection Pursuit |
cepR | Busca CEPs Brasileiros |
cepreader | Read 'CEP' and Legacy 'CANOCO' Files |
CerioliOutlierDetection | Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |
cernn | Covariance Estimation Regularized by Nuclear Norm Penalties |
cetcolor | CET Perceptually Uniform Colour Maps |
ceterisParibus | Ceteris Paribus Profiles |
cfa | Configural Frequency Analysis (CFA) |
CFC | Cause-Specific Framework for Competing-Risk Analysis |
CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |
cffdrs | Canadian Forest Fire Danger Rating System |
cfma | Causal Functional Mediation Analysis |
cg | Compare Groups, Analytically and Graphically |
cgam | Constrained Generalized Additive Model |
cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |
cgdsr | R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |
cgh | Microarray CGH analysis using the Smith-Waterman algorithm |
cghRA | Array CGH Data Analysis and Visualization |
cglasso | L1-Penalized Censored Gaussian Graphical Models |
cglm | Fits Conditional Generalized Linear Models |
cgmanalysis | Clean and Analyze Continuous Glucose Monitor Data |
CGP | Composite Gaussian Process Models |
CGPfunctions | Powell Miscellaneous Functions for Teaching and Learning Statistics |
cgraph | Computational Graphs |
cgwtools | Miscellaneous Tools |
ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |
chandwich | Chandler-Bate Sandwich Loglikelihood Adjustment |
changepoint | Methods for Changepoint Detection |
changepoint.mv | Changepoint Analysis for Multivariate Time Series |
changepoint.np | Methods for Nonparametric Changepoint Detection |
changepointsHD | Change-Point Estimation for Expensive and High-Dimensional Models |
changepointsVar | Change-Points Detections for Changes in Variance |
ChangepointTesting | Change Point Estimation for Clustered Signals |
changer | Change R Package Name |
ChannelAttribution | Markov Model for the Online Multi-Channel Attribution Problem |
ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |
Chaos01 | 0-1 Test for Chaos |
ChaosGame | Chaos Game |
CharFun | Numerical Computation Cumulative Distribution Function and Probability Density Function from Characteristic Function |
ChargeTransport | Charge Transfer Rates and Charge Carrier Mobilities |
charlatan | Make Fake Data |
CHCN | Canadian Historical Climate Network |
cheb | Discrete Linear Chebyshev Approximation |
chebpol | Multivariate Interpolation |
checkarg | Check the Basic Validity of a (Function) Argument |
CheckDigit | Calculate and verify check digits |
checkLuhn | Checks if a Number is Valid Using the Luhn Algorithm |
checkmate | Fast and Versatile Argument Checks |
checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |
checkr | Check the Properties of Common R Objects |
cheddar | Analysis and Visualisation of Ecological Communities |
chemCal | Calibration Functions for Analytical Chemistry |
chemmodlab | A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models |
chemometrics | Multivariate Statistical Analysis in Chemometrics |
ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |
ChemoSpec | Exploratory Chemometrics for Spectroscopy |
ChemoSpec2D | Exploratory Chemometrics for 2D Spectroscopy |
ChemoSpecUtils | Functions Supporting Packages ChemoSpec and ChemoSpec2D |
cherry | Multiple Testing Methods for Exploratory Research |
CHFF | Closest History Flow Field Forecasting for Bivariate Time Series |
chi | The Chi Distribution |
chi2x3way | Partitioning Chi-Squared and Tau Index for Three-Way Contingency Tables |
chicane | Capture Hi-C Analysis Engine |
childesr | Accessing the 'CHILDES' Database |
childhoodmortality | Calculating Childhood Mortality Rates |
childsds | Data and Methods Around Reference Values in Pediatrics |
chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |
chinese.misc | Miscellaneous Tools for Chinese Text Mining and More |
chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |
ChIPtest | Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data |
CHMM | Coupled Hidden Markov Models |
chngpt | Estimation and Hypothesis Testing for Threshold Regression |
CHNOSZ | Thermodynamic Calculations and Diagrams for Geochemistry |
ChocoLattes | Processing Data from Lattes CV Files |
choiceDes | Design Functions for Choice Studies |
ChoiceModelR | Choice Modeling in R |
cholera | Amend, Augment and Aid Analysis of John Snow's Cholera Map |
CholWishart | Cholesky Decomposition of the Wishart Distribution |
choplump | Choplump tests |
chopthin | The Chopthin Resampler |
ChoR | Chordalysis R Package |
chords | Estimation in Respondent Driven Samples |
choroplethr | Simplify the Creation of Choropleth Maps in R |
choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |
choroplethrMaps | Contains Maps Used by the 'choroplethr' Package |
chorrrds | Music Chords Extraction |
chromer | Interface to Chromosome Counts Database API |
chromoMap | Interactive Visualization and Mapping of Human Chromosomes |
chromoR | Analysis of chromosomal interactions data (correction, segmentation and comparison) |
chron | Chronological Objects which can Handle Dates and Times |
CHsharp | Choi and Hall Style Data Sharpening |
chunked | Chunkwise Text-File Processing for 'dplyr' |
chunkR | Read Tables in Chunks |
CIAAWconsensus | Isotope Ratio Meta-Analysis |
CIEE | Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations |
CIFsmry | Weighted summary of cumulative incidence functions |
cifti | Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files |
CIM | Compositional Impact of Migration |
cimir | Interface to the CIMIS Web API |
cin | Causal Inference for Neuroscience |
CINID | Curculionidae INstar IDentification |
CINNA | Deciphering Central Informative Nodes in Network Analysis |
CIplot | Functions to Plot Confidence Interval |
cir | Centered Isotonic Regression and Dose-Response Utilities |
circglmbayes | Bayesian Analysis of a Circular GLM |
circlize | Circular Visualization |
CircMLE | Maximum Likelihood Analysis of Circular Data |
CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |
CircOutlier | Detection of Outliers in Circular-Circular Regression |
CircStats | Circular Statistics, from "Topics in Circular Statistics" (2001) |
circular | Circular Statistics |
CircularDDM | Circular Drift-Diffusion Model |
circumplex | Analysis and Visualization of Circular Data |
cIRT | Choice Item Response Theory |
CISE | Common and Individual Structure Explained for Multiple Graphs |
cit | Causal Inference Test |
CITAN | CITation ANalysis Toolpack |
citbcmst | CIT Breast Cancer Molecular SubTypes Prediction |
citccmst | CIT Colon Cancer Molecular SubTypes Prediction |
Cite | An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents |
ciTools | Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models |
citr | 'RStudio' Add-in to Insert Markdown Citations |
CityPlot | Visualization of structure and contents of a database |
CityWaterBalance | Track Flows of Water Through an Urban System |
ciuupi | Confidence Intervals Utilizing Uncertain Prior Information |
civis | R Client for the 'Civis data science API' |
CJAMP | Copula-Based Joint Analysis of Multiple Phenotypes |
cjoint | AMCE Estimator for Conjoint Experiments |
ck37r | Chris Kennedy's R Toolkit |
ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API' |
CKLRT | Composite Kernel Machine Regression Based on Likelihood Ratio Test |
Ckmeans.1d.dp | Optimal and Fast Univariate Clustering |
CLA | Critical Line Algorithm in Pure R |
Claddis | Measuring Morphological Diversity and Evolutionary Tempo |
cladoRcpp | C++ Implementations of Phylogenetic Cladogenesis Calculations |
clam | Classical Age-Depth Modelling of Cores from Deposits |
clampSeg | Idealisation of Patch Clamp Recordings |
ClamR | Time Series Modeling for Climate Change Proxies |
clarifai | Access to Clarifai API |
class | Functions for Classification |
ClassComparison | Classes and Methods for "Class Comparison" Problems on Microarrays |
ClassDiscovery | Classes and Methods for "Class Discovery" with Microarrays or Proteomics |
classGraph | Construct Graphs of S4 Class Hierarchies |
classifierplots | Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots |
classifly | Explore classification models in high dimensions |
classiFunc | Classification of Functional Data |
classInt | Choose Univariate Class Intervals |
classyfire | Robust multivariate classification using highly optimised SVM ensembles |
classyfireR | R Interface to the ClassyFire RESTful API |
cld2 | Google's Compact Language Detector 2 |
cld3 | Google's Compact Language Detector 3 |
CleanBSequences | Clean Biological Sequences |
cleandata | To Inspect and Manipulate Data; and to Keep Track of This Process |
cleanEHR | The Critical Care Clinical Data Processing Tools |
cleanerR | How to Handle your Missing Data |
cleangeo | Cleaning Geometries from Spatial Objects |
cleanNLP | A Tidy Data Model for Natural Language Processing |
cleanr | Helps You to Code Cleaner |
clere | Simultaneous Variables Clustering and Regression |
clespr | Composite Likelihood Estimation for Spatial Data |
clhs | Conditioned Latin Hypercube Sampling |
cli | Helpers for Developing Command Line Interfaces |
cliapp | Create Rich Command Line Applications |
ClickClust | Model-Based Clustering of Categorical Sequences |
clickR | Fix Data and Create Report Tables from Different Objects |
clickstream | Analyzes Clickstreams Based on Markov Chains |
clifro | Easily Download and Visualise Climate Data from CliFlo |
CliftLRD | Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series |
clikcorr | Censoring Data and Likelihood-Based Correlation Estimation |
climatol | Climate Tools (Series Homogenization and Derived Products) |
climbeR | Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests |
ClimClass | Climate Classification According to Several Indices |
climdex.pcic | PCIC Implementation of Climdex Routines |
ClimDown | Climate Downscaling Library for Daily Climate Model Output |
clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |
climextRemes | Tools for Analyzing Climate Extremes |
ClimProjDiags | Set of Tools to Compute Various Climate Indices |
climwin | Climate Window Analysis |
clinDR | Simulation and Analysis Tools for Clinical Dose Response Modeling |
clinfun | Clinical Trial Design and Data Analysis Functions |
ClinicalTrialSummary | Summary Measures for Clinical Trials with Survival Outcomes |
clinPK | Clinical Pharmacokinetics Toolkit |
ClinReport | Statistical Reporting in Clinical Trials |
clinsig | Clinical Significance Functions |
clinUtiDNA | Clinical Utility of DNA Testing |
clipr | Read and Write from the System Clipboard |
cliqueMS | Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data |
clisymbols | Unicode Symbols at the R Prompt |
CLME | Constrained Inference for Linear Mixed Effects Models |
clogitboost | Boosting Conditional Logit Model |
clogitL1 | Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties |
clogitLasso | Sparse Conditional Logistic Regression for Matched Studies |
clordr | Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data |
cloudml | Interface to the Google Cloud Machine Learning Platform |
cloudUtil | Cloud Utilization Plots |
clpAPI | R Interface to C API of COIN-OR Clp |
clr | Curve Linear Regression via Dimension Reduction |
CLSOCP | A smoothing Newton method SOCP solver |
clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |
clubSandwich | Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |
clue | Cluster Ensembles |
ClueR | Cluster Evaluation |
clues | Clustering Method Based on Local |
CluMix | Clustering and Visualization of Mixed-Type Data |
CluMP | Clustering of Micro Panel Data |
clusrank | Wilcoxon Rank Sum Test for Clustered Data |
clust.bin.pair | Statistical Methods for Analyzing Clustered Matched Pair Data |
clustEff | Clusters of Effects Curves in Quantile Regression Models |
cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |
cluster.datasets | Cluster Analysis Data Sets |
Cluster.OBeu | Cluster Analysis 'OpenBudgets.eu' |
ClusterBootstrap | Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap |
clusterCrit | Clustering Indices |
clusteredinterference | Causal Effects from Observational Studies with Clustered Interference |
ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |
clusterfly | Explore clustering interactively using R and GGobi |
clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |
clusterGenomics | Identifying clusters in genomics data by recursive partitioning |
clusterhap | Clustering Genotypes in Haplotypes |
clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |
clusterlab | Flexible Gaussian Cluster Simulator |
clustermq | Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) |
clusternomics | Integrative Clustering for Heterogeneous Biomedical Datasets |
clusterPower | Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials |
ClusterR | Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering |
ClusterRankTest | Rank Tests for Clustered Data |
clusterRepro | Reproducibility of Gene Expression Clusters |
clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |
clusterSim | Searching for Optimal Clustering Procedure for a Data Set |
ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |
clustertend | Check the Clustering Tendency |
clusteval | Evaluation of Clustering Algorithms |
ClustGeo | Hierarchical Clustering with Spatial Constraints |
clustMD | Model Based Clustering for Mixed Data |
clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |
ClustMMDD | Variable Selection in Clustering by Mixture Models for Discrete Data |
ClustOfVar | Clustering of Variables |
clustRcompaR | Easy Interface for Clustering a Set of Documents and Exploring Group- Based Patterns |
clustrd | Methods for Joint Dimension Reduction and Clustering |
clustree | Visualise Clusterings at Different Resolutions |
clustsig | Significant Cluster Analysis |
ClustVarLV | Clustering of Variables Around Latent Variables |
clustvarsel | Variable Selection for Gaussian Model-Based Clustering |
ClusVis | Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering |
clv | Cluster Validation Techniques |
clValid | Validation of Clustering Results |
cmaes | Covariance Matrix Adapting Evolutionary Strategy |
cmaesr | Covariance Matrix Adaptation Evolution Strategy |
CMatching | Matching Algorithms for Causal Inference with Clustered Data |
CMC | Cronbach-Mesbah Curve |
cmce | Computer Model Calibration for Deterministic and Stochastic Simulators |
cmenet | Bi-Level Selection of Conditional Main Effects |
CMF | Collective matrix factorization |
CMLS | Constrained Multivariate Least Squares |
cmm | Categorical Marginal Models |
cmna | Computational Methods for Numerical Analysis |
CMPControl | Control Charts for Conway-Maxwell-Poisson Distribution |
CMplot | Circle Manhattan Plot |
cmpprocess | Flexible Modeling of Count Processes |
cmprsk | Subdistribution Analysis of Competing Risks |
cmprskQR | Analysis of Competing Risks Using Quantile Regressions |
cmrutils | Misc Functions of the Center for Mathematical Research |
cmsaf | Tools for CM SAF NetCDF Data |
cmvnorm | The Complex Multivariate Gaussian Distribution |
cna | Causal Modeling with Coincidence Analysis |
cnbdistr | Conditional Negative Binomial Distribution |
cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |
CNLTreg | Complex-Valued Wavelet Lifting for Signal Denoising |
CNLTtsa | Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis |
cnmlcd | Maximum Likelihood Estimation of a Log-Concave Density Function |
CNOGpro | Copy Numbers of Genes in prokaryotes |
cNORM | Continuous Norming |
CNprep | Pre-process DNA Copy Number (CN) Data for Detection of CN Events |
CNull | Fast Algorithms for Frequency-Preserving Null Models in Ecology |
CNVScope | A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization |
coala | A Framework for Coalescent Simulation |
coalescentMCMC | MCMC Algorithms for the Coalescent |
coalitions | Coalition Probabilities in Multi-Party Democracies |
coarseDataTools | A Collection of Functions to Help with Analysis of Coarsely Observed Data |
cobalt | Covariate Balance Tables and Plots |
cobiclust | Biclustering via Latent Block Model Adapted to Overdispersed Count Data |
COBRA | Nonlinear Aggregation of Predictors |
cobs | Constrained B-Splines (Sparse Matrix Based) |
cocktailApp | 'shiny' App to Discover Cocktails |
CoClust | Copula Based Cluster Analysis |
COCONUT | COmbat CO-Normalization Using conTrols (COCONUT) |
cocor | Comparing Correlations |
cocoreg | Extract Shared Variation in Collections of Data Sets Using Regression Models |
cocorresp | Co-Correspondence Analysis Methods |
cocron | Statistical Comparisons of Two or more Alpha Coefficients |
coda | Output Analysis and Diagnostics for MCMC |
coda.base | A Basic Set of Functions for Compositional Data Analysis |
codadiags | Markov chain Monte Carlo burn-in based on "bridge" statistics |
cOde | Automated C Code Generation for 'deSolve', 'bvpSolve' and 'Sundials' |
codebook | Automatic Codebooks from Metadata Encoded in Dataset Attributes |
CodeDepends | Analysis of R Code for Reproducible Research and Code Comprehension |
codemetar | Generate 'CodeMeta' Metadata for R Packages |
codep | Multiscale Codependence Analysis |
codetools | Code Analysis Tools for R |
codified | Produce Standard/Formalized Demographics Tables |
CoDiNA | Co-Expression Differential Network Analysis |
codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |
codyn | Community Dynamics Metrics |
coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |
coefplot | Plots Coefficients from Fitted Models |
coenocliner | Coenocline Simulation |
coenoflex | Gradient-Based Coenospace Vegetation Simulator |
coexist | Species coexistence modeling and analysis |
cofeatureR | Generate Cofeature Matrices |
CoFRA | Complete Functional Regulation Analysis |
coga | Convolution of Gamma Distributions |
CoImp | Copula Based Imputation Method |
coin | Conditional Inference Procedures in a Permutation Test Framework |
coindeskr | Access 'CoinDesk' Bitcoin Price Index API |
coinmarketcapr | Get Cryptocurrencies Market Cap Prices from Coin Market Cap |
CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |
cointmonitoR | Consistent Monitoring of Stationarity and Cointegrating Relationships |
cointReg | Parameter Estimation and Inference in a Cointegrating Regression |
colf | Constrained Optimization on Linear Function |
CollapsABEL | Generalized CDH (GCDH) Analysis |
CollapseLevels | Collapses Levels, Computes Information Value and WoE |
collapsibleTree | Interactive Collapsible Tree Diagrams using 'D3.js' |
collateral | Quickly Evaluate Captured Side Effects |
collectArgs | Quickly and Neatly Collect Arguments from One Environment to Pass to Another |
collections | High Performance Container Data Types |
CollessLike | Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees |
CollocInfer | Collocation Inference for Dynamic Systems |
collpcm | Collapsed Latent Position Cluster Model for Social Networks |
collUtils | Auxiliary Package for Package 'CollapsABEL' |
colmozzie | Dengue Cases and Climate Variables in Colombo Sri Lanka |
coloc | Colocalisation Tests of Two Genetic Traits |
colocalization | Normalized Spatial Intensity Correlation |
colordistance | Distance Metrics for Image Color Similarity |
coloredICA | Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis |
colorednoise | Simulate Temporally Autocorrelated Populations |
colorfindr | Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images |
colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |
colorhcplot | Colorful Hierarchical Clustering Dendrograms |
colormap | Color Palettes using Colormaps Node Module |
ColorPalette | Color Palettes Generator |
colorpatch | Optimized Rendering of Fold Changes and Confidence Values |
colorr | Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams |
colorRamps | Builds color tables |
colorscience | Color Science Methods and Data |
colorspace | A Toolbox for Manipulating and Assessing Colors and Palettes |
colorSpec | Color Calculations with Emphasis on Spectral Data |
colortools | Tools for colors in a Hue-Saturation-Value (HSV) color model |
colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |
colourvalues | Assigns Colours to Values |
colourvision | Colour Vision Models |
colr | Functions to Select and Rename Data |
colt | Command-Line Color Themes |
comato | Analysis of Concept Maps and Concept Landscapes |
COMBAT | A Combined Association Test for Genes using Summary Statistics |
COMBIA | Synergy/Antagonism Analyses of Drug Combinations |
combinat | combinatorics utilities |
CombinePortfolio | Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |
CombinePValue | Combine a Vector of Correlated p-values |
CombinS | Construction Methods of some Series of PBIB Designs |
combiter | Combinatorics Iterators |
CombMSC | Combined Model Selection Criteria |
comclim | Community Climate Statistics |
cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |
comf | Functions for Thermal Comfort Research |
ComICS | Computational Methods for Immune Cell-Type Subsets |
commandr | Command pattern in R |
CommEcol | Community Ecology Analyses |
commentr | Print Nicely Formatted Comments for Use in Script Files |
CommonJavaJars | Useful Libraries for Building a Java Based GUI under R |
commonmark | High Performance CommonMark and Github Markdown Rendering in R |
commonsMath | JAR Files of the Apache Commons Mathematics Library |
CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |
CommT | Comparative Phylogeographic Analysis using the Community Tree Framework |
CommunityCorrelogram | Ecological Community Correlogram |
comorbidity | Computing Comorbidity Scores |
Comp2ROC | Compare Two ROC Curves that Intersect |
compactr | Creates empty plots with compact axis notation |
compare | Comparing Objects for Differences |
compareC | Compare Two Correlated C Indices with Right-censored Survival Outcome |
CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |
compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |
compareGroups | Descriptive Analysis by Groups |
compareODM | comparison of medical forms in CDISC ODM format |
comparer | Compare Output and Run Time |
CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |
comparison | Multivariate likelihood ratio calculation and evaluation |
compas | Conformational Manipulations of Protein Atomic Structures |
compboost | C++ Implementation of Component-Wise Boosting |
CompDist | Multisection Composite Distributions |
compeir | Event-specific incidence rates for competing risks data |
compendiumdb | Tools for Retrieval and Storage of Functional Genomics Data |
comperank | Ranking Methods for Competition Results |
comperes | Manage Competition Results |
compete | Analyzing Social Hierarchies |
CompGLM | Conway-Maxwell-Poisson GLM and Distribution Functions |
compHclust | Complementary Hierarchical Clustering |
Compind | Composite Indicators Functions |
complexity | Calculate the Proportion of Permutations in Line with an Informative Hypothesis |
complexplus | Functions of Complex or Real Variable |
complmrob | Robust Linear Regression with Compositional Data as Covariates |
CompLognormal | Functions for actuarial scientists |
compoisson | Conway-Maxwell-Poisson Distribution |
COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |
Compositional | Compositional Data Analysis |
compositions | Compositional Data Analysis |
compound.Cox | Univariate Feature Selection and Compound Covariate for Predicting Survival |
Compounding | Computing Continuous Distributions |
CompQuadForm | Distribution Function of Quadratic Forms in Normal Variables |
CompR | Paired Comparison Data Analysis |
CompRandFld | Composite-Likelihood Based Analysis of Random Fields |
compute.es | Compute Effect Sizes |
comtradr | Interface with the United Nations Comtrade API |
con2aqi | Calculate the AQI from Pollutant Concentration |
Conake | Continuous Associated Kernel Estimation |
concatenate | Human-Friendly Text from Unknown Strings |
concaveman | A Very Fast 2D Concave Hull Algorithm |
conclust | Pairwise Constraints Clustering |
ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |
concor | Concordance |
concordance | Product Concordance |
concreg | Concordance Regression |
concurve | Computes and Plots Confidence (Consonance) Intervals, P-Values, and S-Values to Form Consonance Curves (Functions) |
cond | Approximate Conditional Inference for Logistic and Loglinear Models |
condformat | Conditional Formatting in Data Frames |
condGEE | Parameter estimation in conditional GEE for recurrent event gap times |
CondIndTests | Nonlinear Conditional Independence Tests |
condir | Computation of P Values and Bayes Factors for Conditioning Data |
conditions | Standardized Conditions for R |
condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |
condMVNorm | Conditional Multivariate Normal Distribution |
CONDOP | Condition-Dependent Operon Predictions |
CondReg | Condition Number Regularized Covariance Estimation |
condSURV | Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |
condusco | Query-Driven Pipeline Execution and Query Templates |
condvis | Conditional Visualization for Statistical Models |
coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |
conf | Visualization and Analysis of Statistical Measures of Confidence |
conf.design | Construction of factorial designs |
confidence | Confidence Estimation of Environmental State Classifications |
config | Manage Environment Specific Configuration Values |
ConfigParser | Package to Parse an INI File, Including Variable Interpolation |
configr | An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML) |
configural | Multivariate Profile Analysis |
confinterpret | Descriptive Interpretations of Confidence Intervals |
conflicted | An Alternative Conflict Resolution Strategy |
conformalClassification | Transductive and Inductive Conformal Predictions for Classification Problems |
ConfoundedMeta | Sensitivity Analyses for Unmeasured Confounding in Meta-Analyses |
confreq | Configural Frequencies Analysis Using Log-Linear Modeling |
confSAM | Estimates and Bounds for the False Discovery Proportion, by Permutation |
congressbr | Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies |
CongreveLamsdell2016 | Distance Metrics for Trees Generated by Congreve and Lamsdell |
conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |
conics | Plot Conics |
Conigrave | Flexible Tools for Multiple Imputation |
conjoint | An Implementation of Conjoint Analysis Method |
ConjointChecks | A package to check the cancellation axioms of conjoint measurement |
ConnMatTools | Tools for Working with Connectivity Data |
conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |
ConR | Computation of Parameters Used in Preliminary Assessment of Conservation Status |
CONS | Consonance Analysis Module |
ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |
ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |
constants | Reference on Constants, Units and Uncertainty |
constellation | Identify Event Sequences Using Time Series Joins |
constrainedKriging | Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |
conStruct | Models Spatially Continuous and Discrete Population Genetic Structure |
container | Deque, Set, and Dict - R6 Based Container Classes with Iterators |
ContaminatedMixt | Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution |
contextual | Simulation and Analysis of Contextual Multi-Armed Bandit Policies |
contfrac | Continued Fractions |
conting | Bayesian Analysis of Contingency Tables |
contoureR | Contouring of Non-Regular Three-Dimensional Data |
ContourFunctions | Create Contour Plots from Data or a Function |
contrast | A Collection of Contrast Methods |
control | A Control Systems Toolbox |
controlTest | Quantile Comparison for Two-Sample Right-Censored Survival Data |
ConvergenceClubs | Finding Convergence Clubs |
ConvergenceConcepts | Seeing Convergence Concepts in Action |
convertGraph | Convert Graphical Files Format |
convertr | Convert Between Units |
convevol | Analysis of Convergent Evolution |
convexjlr | Disciplined Convex Programming in R using 'Convex.jl' |
convey | Income Concentration Analysis with Complex Survey Samples |
convoSPAT | Convolution-Based Nonstationary Spatial Modeling |
cooccur | Probabilistic Species Co-Occurrence Analysis in R |
cooccurNet | Co-Occurrence Network |
coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |
coopProductGame | Cooperative Aspects of Linear Production Programming Problems |
cooptrees | Cooperative aspects of optimal trees in weighted graphs |
CoordinateCleaner | Automated Cleaning of Occurrence Records from Biological Collections |
copBasic | General Bivariate Copula Theory and Many Utility Functions |
copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |
CopCTS | Copula-Based Semiparametric Analysis for Time Series Data with Detection Limits |
cope | Coverage Probability Excursion (CoPE) Sets |
coppeCosenzaR | COPPE-Cosenza Fuzzy Hierarchy Model |
coprimary | Sample Size Calculation for Two Primary Time-to-Event Endpoints in Clinical Trials |
copula | Multivariate Dependence with Copulas |
Copula.Markov | Copula-Based Estimation and Statistical Process Control for Serially Correlated Time Series |
Copula.surv | Association Analysis of Bivariate Survival Data Based on Copulas |
copulaData | Data Sets for Copula Modeling |
CopulaDTA | Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies |
copulaedas | Estimation of Distribution Algorithms Based on Copulas |
CopulaREMADA | Copula Mixed Effects Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies |
CopyDetect | Computing Response Similarity Indices for Multiple-Choice Tests |
coRanking | Co-Ranking Matrix |
Corbi | Collection of Rudimentary Bioinformatics Tools |
corclass | Correlational Class Analysis |
cord | Community Estimation in G-Models via CORD |
CorDiff | Set-Based Differential Covariance Testing for Genomics |
cordillera | Calculation of the OPTICS Cordillera |
CORE | Cores of Recurrent Events |
coreCT | Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging |
corehunter | Multi-Purpose Core Subset Selection |
CORElearn | Classification, Regression and Feature Evaluation |
coreNLP | Wrappers Around Stanford CoreNLP Tools |
coreSim | Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |
coreTDT | TDT for compound heterozygous and recessive models |
corHMM | Analysis of Binary Character Evolution |
corkscrew | Preprocessor for Data Modeling |
corlink | Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields |
CORM | The Clustering of Regression Models Method |
CornerstoneR | Collection of Scripts for Interface Between 'Cornerstone' and 'R' |
coroICA | Confounding Robust Independent Component Analysis for Noisy and Grouped Data |
corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
corpora | Statistics and Data Sets for Corpus Frequency Data |
CorporaCoCo | Corpora Co-Occurrence Comparison |
CoRpower | Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials |
corpus | Text Corpus Analysis |
corpustools | Managing, Querying and Analyzing Tokenized Text |
corr2D | Implementation of 2D Correlation Analysis in R |
CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |
corrDNA | Finding Associations in Position-Wise Aligned DNA Sequence Dataset |
correctedAUC | Correcting AUC for Measurement Error |
CorrectedFDR | Correcting False Discovery Rates |
CorrectOverloadedPeaks | Correct Overloaded Peaks from GC-APCI-MS Data |
CorReg | Linear Regression Based on Linear Structure Between Variables |
corregp | Functions and Methods for Correspondence Regression |
correlbinom | Correlated Binomial Probabilities |
Correlplot | A collection of functions for graphing correlation matrices |
corrgram | Plot a Correlogram |
CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |
corrplot | Visualization of a Correlation Matrix |
corrsieve | CorrSieve |
CorrToolBox | Modeling Correlational Magnitude Transformations in Discretization Contexts |
corset | Arbitrary Bounding of Series and Time Series Objects |
corTest | Robust Tests for Equal Correlation |
corTools | Tools for processing data after a Genome Wide Association Study |
cosa | Bound Constrained Optimal Sample Allocation |
COSINE | COndition SpecIfic sub-NEtwork |
cosinor | Tools for estimating and predicting the cosinor model |
cosinor2 | Extended Tools for Cosinor Analysis of Rhythms |
cosmoFns | Functions for cosmological distances, times, luminosities, etc |
cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |
COST | Copula-Based Semiparametric Models for Spatio-Temporal Data |
costat | Time Series Costationarity Determination |
CosW | The CosW Distribution |
cotrend | Consistant Cotrend Rank Selection |
couchDB | Connect to and Work with CouchDB Databases |
COUNT | Functions, Data and Code for Count Data |
countcolors | Locates and Counts Pixels Within Color Range(s) in Images |
Counterfactual | Estimation and Inference Methods for Counterfactual Analysis |
countfitteR | Comprehensive Automatized Evaluation of Distribution Models for Count Data |
countgmifs | Discrete Response Regression for High-Dimensional Data |
Countr | Flexible Univariate Count Models Based on Renewal Processes |
countrycode | Convert Country Names and Country Codes |
CountsEPPM | Mean and Variance Modeling of Count Data |
countyfloods | Quantify United States County-Level Flood Measurements |
countytimezones | Convert from UTC to Local Time for United States Counties |
countyweather | Compiles Meterological Data for U.S. Counties |
COUSCOus | A Residue-Residue Contact Detecting Method |
covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |
covatest | Tests on Properties of Space-Time Covariance Functions |
covBM | Brownian Motion Processes for 'nlme'-Models |
coveffectsplot | Produce Forest Plots to Visualize Covariate Effects |
covequal | Test for Equality of Covariance Matrices |
covfefe | Covfefy Any Word, Sentence or Speech |
covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |
covr | Test Coverage for Packages |
covreg | A simultaneous regression model for the mean and covariance |
covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
CovSel | Model-Free Covariate Selection |
CovSelHigh | Model-Free Covariate Selection in High Dimensions |
covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |
covTestR | Covariance Matrix Tests |
CovTools | Statistical Tools for Covariance Analysis |
cowbell | Performs Segmented Linear Regression on Two Independent Variables |
cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |
cowsay | Messages, Warnings, Strings with Ascii Animals |
CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |
coxed | Duration-Based Quantities of Interest for the Cox Proportional Hazards Model |
coxinterval | Cox-Type Models for Interval-Censored Data |
coxme | Mixed Effects Cox Models |
coxphf | Cox Regression with Firth's Penalized Likelihood |
CoxPhLb | Analyzing Right-Censored Length-Biased Data |
coxphMIC | Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion |
coxphSGD | Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model |
coxphw | Weighted Estimation in Cox Regression |
CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |
CoxRidge | Cox Models with Dynamic Ridge Penalties |
coxrobust | Robust Estimation in Cox Model |
coxrt | Cox Proportional Hazards Regression for Right Truncated Data |
coxsei | Fitting a CoxSEI Model |
CP | Conditional Power Calculations |
cp4p | Calibration Plot for Proteomics |
cpa | Confirmatory Path Analysis through the d-sep tests |
CPAT | Change Point Analysis Tests |
CPBayes | Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations |
cpca | Methods to perform Common Principal Component Analysis (CPCA) |
cPCG | Efficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations |
CPE | Concordance Probability Estimates in Survival Analysis |
CpGassoc | Association Between Methylation and a Phenotype of Interest |
cpgen | Parallelized Genomic Prediction and GWAS |
CpGFilter | CpG Filtering Method Based on Intra-Class Correlation Coefficients |
cpk | Clinical Pharmacokinetics |
cplexAPI | R Interface to C API of IBM ILOG CPLEX |
cplm | Compound Poisson Linear Models |
cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |
CPMCGLM | Correction of the P-Value after Multiple Coding in Generalized Linear Models |
CPP | Composition of Probabilistic Preferences (CPP) |
cpr | Control Polygon Reduction |
Cprob | The Conditional Probability Function of a Competing Event |
cprr | Functions for Working with Danish CPR Numbers |
CPsurv | Nonparametric Change Point Estimation for Survival Data |
cpt | Classification Permutation Test |
cptcity | 'cpt-city' Colour Gradients |
cptec | An Interface to the 'CPTEC/INPE' API |
cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |
cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |
CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |
cr17 | Testing Differences Between Competing Risks Models and Their Visualisations |
CRAC | Cosmology R Analysis Code |
cramer | Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem |
crank | Completing Ranks |
cranlike | Tools for 'CRAN'-Like Repositories |
cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |
cranly | Package Directives and Collaboration Networks in CRAN |
CRANsearcher | RStudio Addin for Searching Packages in CRAN Database Based on Keywords |
crantastic | Various R tools for http://crantastic.org/ |
crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |
crayon | Colored Terminal Output |
crch | Censored Regression with Conditional Heteroscedasticity |
CREAM | Clustering of Genomic Regions Analysis Method |
CreditMetrics | Functions for calculating the CreditMetrics risk model |
creditr | Credit Default Swaps in R |
CreditRisk | Evaluation of Credit Risk with Structural and Reduced Form Models |
credsubs | Credible Subsets |
credule | Credit Default Swap Functions |
cregg | Simple Conjoint Tidying, Analysis, and Visualization |
cRegulome | Obtain and Visualize Regulome-Gene Expression Correlations in Cancer |
CRF | Conditional Random Fields |
crfsuite | Conditional Random Fields for Labelling Sequential Data in Natural Language Processing |
cricketr | Analyze Cricketers Based on ESPN Cricinfo Statsguru |
crimCV | Group-Based Modelling of Longitudinal Data |
crimedata | Access Crime Data from the Open Crime Database |
crimelinkage | Statistical Methods for Crime Series Linkage |
crisp | Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way |
CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |
crminer | Fetch 'Scholary' Full Text from 'Crossref' |
crmn | CCMN and other noRMalizatioN methods for metabolomics data |
crmPack | Object-Oriented Implementation of CRM Designs |
crn | Downloads and Builds datasets for Climate Reference Network |
crochet | Implementation Helper for [ and [<- Of Custom Matrix-Like Types |
cromwellDashboard | A Dashboard to Visualize Scientific Workflows in 'Cromwell' |
cronR | Schedule R Scripts and Processes with the 'cron' Job Scheduler |
crop | Graphics Cropping Tool |
cropdatape | Open Data of Agricultural Production of Crops of Peru |
CrossClustering | A Partial Clustering Algorithm |
crossdes | Construction of Crossover Designs |
crossmatch | The Cross-match Test |
Crossover | Analysis and Search of Crossover Designs |
crossReg | Confidence intervals for crossover points of two simple regression lines |
crossrun | Joint Distribution of Number of Crossings and Longest Run |
CrossScreening | Cross-Screening in Observational Studies that Test Many Hypotheses |
crosstalk | Inter-Widget Interactivity for HTML Widgets |
CrossVA | Verbal Autopsy Data Transform for Use with Various Coding Algorithms |
crossval | Generic Functions for Cross Validation |
CrossValidate | Classes and Methods for Cross Validation of "Class Prediction" Algorithms |
crosswalkr | Rename and Encode Data Frames Using External Crosswalk Files |
crossword.r | Generating Crosswords from Word Lists |
crov | Constrained Regression Model for an Ordinal Response and Ordinal Predictors |
crp.CSFP | CreditRisk+ Portfolio Model |
CRPClustering | Bayesian Nonparametric Chinese Restaurant Process Clustering with Entropy |
crplyr | A 'dplyr' Interface for Crunch |
crqa | Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |
crqanlp | Cross-Recurrence Quantification Analysis for Dynamic Natural Language Processing |
crrp | Penalized Variable Selection in Competing Risks Regression |
crrSC | Competing risks regression for Stratified and Clustered data |
crrstep | Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |
crs | Categorical Regression Splines |
crseEventStudy | A Robust and Powerful Test of Abnormal Stock Returns in Long-Horizon Event Studies |
crskdiag | Diagnostics for Fine and Gray Model |
crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |
crsra | Tidying and Analyzing 'Coursera' Research Export Data |
crtests | Classification and Regression Tests |
CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |
CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |
crul | HTTP Client |
crunch | Crunch.io Data Tools |
crunchy | Shiny Apps on Crunch |
cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |
CrypticIBDcheck | Identifying Cryptic Relatedness in Genetic Association Studies |
crypto | Cryptocurrency Market Data |
CryptRndTest | Statistical Tests for Cryptographic Randomness |
cryst | Calculate the Relative Crystallinity of Starch by XRD and FTIR |
csabounds | Bounds on Distributional Treatment Effect Parameters |
csampling | Functions for Conditional Simulation in Regression-Scale Models |
CsChange | Testing for Change in C-Statistic |
CSclone | Bayesian Nonparametric Modeling in R |
CSeqpat | Frequent Contiguous Sequential Pattern Mining of Text |
CSESA | CRISPR-Based Salmonella Enterica Serotype Analyzer |
CSFA | Connectivity Scores with Factor Analysis |
cshapes | The CShapes Dataset and Utilities |
csn | Closed Skew-Normal Distribution |
csp | Correlates of State Policy Data Set in R |
csrplus | Methods to Test Hypotheses on the Distribution of Spatial Point Processes |
csSAM | csSAM - cell-specific Significance Analysis of Microarrays |
cssTools | Cognitive Social Structure Tools |
cstab | Selection of Number of Clusters via Normalized Clustering Instability |
cstar | Substantive significance testing for regression estimates and marginal effects |
csv | Read and Write CSV Files with Selected Conventions |
csvread | Fast Specialized CSV File Loader |
csvy | Import and Export CSV Data with a YAML Metadata Header |
cthreshER | Continuous Threshold Expectile Regression |
ctl | Correlated Trait Locus (CTL) Mapping in R |
CTM | A Text Mining Toolkit for Chinese Document |
ctmcd | Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data |
ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |
ctmle | Collaborative Targeted Maximum Likelihood Estimation |
ctmm | Continuous-Time Movement Modeling |
ctqr | Censored and Truncated Quantile Regression |
CTRE | Thresholding Bursty Time Series |
ctrlGene | Assess the Stability of Candidate Housekeeping Genes |
cts | Continuous Time Autoregressive Models |
ctsem | Continuous Time Structural Equation Modelling |
CTT | Classical Test Theory Functions |
CTTinShiny | Shiny Interface for the CTT Package |
CTTShiny | Classical Test Theory via Shiny |
ctv | CRAN Task Views |
CUB | A Class of Mixture Models for Ordinal Data |
cubature | Adaptive Multivariate Integration over Hypercubes |
cubfits | Codon Usage Bias Fits |
cubing | Rubik's Cube Solving |
Cubist | Rule- And Instance-Based Regression Modeling |
CUFF | Charles's Utility Function using Formula |
cultevo | Tools, Measures and Statistical Tests for Cultural Evolution |
CUMP | Analyze Multivariate Phenotypes by Combining Univariate Results |
cumplyr | Extends ddply to allow calculation of cumulative quantities |
cumSeg | Change Point Detection in Genomic Sequences |
cumstats | Cumulative Descriptive Statistics |
curl | A Modern and Flexible Web Client for R |
currentSurvival | Estimation of CCI and CLFS Functions |
curry | Partial Function Application with %<%, %-<%, and %><% |
curstatCI | Confidence Intervals for the Current Status Model |
curvecomp | Multiple Curve Comparisons Using Parametric Bootstrap |
curveDepth | Tukey Curve Depth and Distance in the Space of Curves |
curvHDR | Filtering of Flow Cytometry Samples |
cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |
CustomerScoringMetrics | Evaluation Metrics for Customer Scoring Models Depending on Binary Classifiers |
customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |
customLayout | Arrange Elements on the R's Drawing Area or Inside the PowerPoint's Slide |
customsteps | Customizable Higher-Order Recipe Step Functions |
cusum | CUSUM Charts for Monitoring of Hospital Performance |
CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |
cutoffR | CUTOFF: A Spatio-temporal Imputation Method |
cutpointr | Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks |
CutpointsOEHR | Optimal Equal-HR Method to Find Two Cutpoints for U-Shaped Relationships in Cox Model |
cuttlefish.model | An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |
cvar | Compute Expected Shortfall and Value at Risk for Continuous Distributions |
cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |
CVcalibration | Estimation of the Calibration Equation with Error-in Observations |
cvcrand | Efficient Design and Analysis of Cluster Randomized Trials |
CVD | Color Vision Deficiencies |
cvequality | Tests for the Equality of Coefficients of Variation from Multiple Groups |
CVglasso | Lasso Penalized Precision Matrix Estimation |
cvmgof | Cramer-von Mises Goodness-of-Fit Tests |
cvq2 | Calculate the predictive squared correlation coefficient |
CVR | Canonical Variate Regression |
CVST | Fast Cross-Validation via Sequential Testing |
CVThresh | Level-Dependent Cross-Validation Thresholding |
cvTools | Cross-validation tools for regression models |
CVTuningCov | Regularized Estimators of Covariance Matrices with CV Tuning |
cvxbiclustr | Convex Biclustering Algorithm |
cvxclustr | Splitting methods for convex clustering |
CVXR | Disciplined Convex Optimization |
cwhmisc | Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools |
cwm | Cluster Weighted Models by EM algorithm |
cxhull | Convex Hull |
cxxfunplus | extend cxxfunction by saving the dynamic shared objects |
cycleRtools | Tools for Cycling Data Analysis |
cyclestreets | Cycle Routing and Data for Cycling Advocacy |
cyclocomp | Cyclomatic Complexity of R Code |
cycloids | cycloids |
Cyclops | Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis |
cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |
cyphid | Cycle and Phase Identification for mastication data |
cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |
CytobankAPI | Cytobank API Wrapper for R |
CytobankAPIstats | Computes Signaling and Population Stats for Cytometry Data on Cytobank using 'CytobankAPI' |
CytobankBridgeR | Bridging and Extending the CytobankAPI Package in R to the Cytobank Web Application |
cytoDiv | Cytometric diversity indices |
cytofan | Plot Fan Plots for Cytometry Data using 'ggplot2' |
cytometree | Automated Cytometry Gating and Annotation |
cytominer | Methods for Image-Based Cell Profiling |
D2C | Predicting Causal Direction from Dependency Features |
D3GB | Interactive Genome Browser with R |
d3heatmap | Interactive Heat Maps Using 'htmlwidgets' and 'D3.js' |
d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |
D3partitionR | Interactive Charts of Nested and Hierarchical Data with 'D3.js' |
d3plus | Seamless 'D3Plus' Integration |
d3r | 'd3.js' Utilities for R |
d3Tree | Create Interactive Collapsible Trees with the JavaScript 'D3' Library |
DAAG | Data Analysis and Graphics Data and Functions |
DAAGbio | Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences |
DAAGxtras | Data Sets and Functions, supplementary to DAAG |
daarem | Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms |
dabestr | Data Analysis using Bootstrap-Coupled Estimation |
DAC | Calculating Data Agreement Criterion Scores to Rank Experts Based on Their Beliefs |
DACF | Data Analysis with Ceiling and/or Floor Data |
dad | Three-Way / Multigroup Data Analysis Through Densities |
dae | Functions Useful in the Design and ANOVA of Experiments |
daewr | Design and Analysis of Experiments with R |
daff | Diff, Patch and Merge for Data.frames |
dafs | Data analysis for forensic scientists |
dagitty | Graphical Analysis of Structural Causal Models |
dagR | R functions for directed acyclic graphs |
DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |
DAKS | Data Analysis and Knowledge Spaces |
DALEX | Descriptive mAchine Learning EXplanations |
DALEX2 | Descriptive mAchine Learning EXplanations |
dalmatian | Automating the Fitting of Double Linear Mixed Models in 'JAGS' |
DALY | The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R |
dam | Data Analysis Metabolomics |
DamiaNN | Neural Network Numerai |
DAMisc | Dave Armstrong's Miscellaneous Functions |
DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |
damr | Interface to Drosophila Activity Monitor System Result Files |
dams | Dams in the United States from the National Inventory of Dams (NID) |
DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |
dang | 'Dang' Associated New Goodies |
DAP | Discriminant Analysis via Projections |
dapr | 'purrr'-Like Apply Functions Over Input Elements |
Dark | The Analysis of Dark Adaptation Data |
darksky | Tools to Work with the 'Dark Sky' 'API' |
dartR | Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis |
darts | Statistical Tools to Analyze Your Darts Game |
dashboard | Interactive Data Visualization with D3.js |
Dasst | Tools for Reading, Processing and Writing 'DSSAT' Files |
dat | Tools for Data Manipulation |
data.table | Extension of 'data.frame' |
data.tree | General Purpose Hierarchical Data Structure |
data.world | Functions and Add-Ins for Working with 'data.world' Data Sets and Projects |
Data2LD | Functional Data Analysis with Linear Differential Equations |
data360r | Wrapper for TC/Govdata360 API |
DatabaseConnector | Connecting to Various Database Platforms |
DatabaseConnectorJars | JAR Dependencies for the 'DatabaseConnector' Package |
DatabionicSwarm | Swarm Intelligence for Self-Organized Clustering |
datacheck | Tools for Checking Data Consistency |
DataClean | Data Cleaning |
DataCombine | Tools for Easily Combining and Cleaning Data Sets |
dataCompareR | Compare Two Data Frames and Summarise the Difference |
datadigest | Create an Interactive Data Summary |
datadogr | R Client for 'Datadog' API |
datadr | Divide and Recombine for Large, Complex Data |
DataEntry | Make it Easier to Enter Questionnaire Data |
DataExplorer | Data Explorer |
dataframes2xls | Write Data Frames to Xls Files |
datafsm | Estimating Finite State Machine Models from Data |
DataGraph | Export Data from R so DataGraph can Read it |
DataLoader | Import Multiple File Types |
dataMaid | A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process |
datamap | A system for mapping foreign objects to R variables and environments |
datamaps | Create Interactive Web Maps with the 'JavaScript Datamaps' Library |
datamart | Unified access to your data sources |
dataMeta | Create and Append a Data Dictionary for an R Dataset |
dataonderivatives | Easily Source Publicly Available Data on Derivatives |
dataone | R Interface to the DataONE REST API |
datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |
DataPackageR | Construct Reproducible Analytic Data Sets as R Packages |
datapasta | R Tools for Data Copy-Pasta |
dataPreparation | Automated Data Preparation |
dataQualityR | Performs variable level data quality checks and generates summary statistics |
dataRetrieval | Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data |
datarobot | 'DataRobot' Predictive Modeling API |
datasauRus | Datasets from the Datasaurus Dozen |
dataseries | Switzerland's Data Series in One Place |
datasets.load | Interface for Loading Datasets |
DatAssim | Data Assimilation |
datastepr | An Implementation of a SAS-Style Data Step |
datastructures | Implementation of Core Data Structures |
datasus | An Interface to DATASUS System |
datautils | Timestamps and Advanced Plotting |
dataverse | Client for Dataverse 4 Repositories |
dataview | Data and Workspace Browser for Terminals |
DataVisualizations | Visualizations of High-Dimensional Data |
date | Functions for Handling Dates |
datetime | Nominal Dates, Times, and Durations |
datetimeutils | Utilities for Dates and Times |
DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |
datoramar | Interface to the 'Datorama' API |
datr | 'Dat' Protocol Interface |
dave | Functions for "Data Analysis in Vegetation Ecology" |
Davies | The Davies Quantile Function |
dawai | Discriminant Analysis with Additional Information |
daymetr | Interface to the 'Daymet' Web Services |
dbarts | Discrete Bayesian Additive Regression Trees Sampler |
dbConnect | Provides a graphical user interface to connect with databases that use MySQL |
dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |
dbEmpLikeNorm | Test for joint assessment of normality |
DBEST | Detecting Breakpoints and Estimating Segments in Trend |
dbfaker | A Tool to Ensure the Validity of Database Writes |
DBfit | A Double Bootstrap Method for Analyzing Linear Models with Autoregressive Errors |
DBGSA | methods of distance-based gene set functional enrichment analysis |
DBHC | Sequence Clustering with Discrete-Output HMMs |
dbhydroR | 'DBHYDRO' Hydrologic and Water Quality Data |
DBI | R Database Interface |
DBItest | Testing 'DBI' Back Ends |
DBKGrad | Discrete Beta Kernel Graduation of Mortality Data |
dblcens | Compute the NPMLE of distribution from doubly censored data |
dblr | Discrete Boosting Logistic Regression |
dbmss | Distance-Based Measures of Spatial Structures |
dbparser | 'DrugBank' Database XML Parser |
dbplot | Simplifies Plotting Data Inside Databases |
dbplyr | A 'dplyr' Back End for Databases |
dbscan | Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms |
dbstats | Distance-Based Statistics |
dbx | A Fast, Easy-to-Use Database Interface |
dc3net | Inferring Condition-Specific Networks via Differential Network Inference |
DCA | Dynamic Correlation Analysis for High Dimensional Data |
DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |
DCD | Differential Community Detection in Paired Biological Networks |
DCEM | Clustering for Multivariate and Univariate Data Using Expectation Maximization Algorithm |
dcemriS4 | A Package for Image Analysis of DCE-MRI (S4 Implementation) |
DCG | Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis |
DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |
dcGOR | Analysis of Ontologies and Protein Domain Annotations |
dChipIO | Methods for Reading dChip Files |
DCL | Claims Reserving under the Double Chain Ladder Model |
dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |
DCluster | Functions for the Detection of Spatial Clusters of Diseases |
DClusterm | Model-Based Detection of Disease Clusters |
DCM | Data Converter Module |
dcminfo | Information Matrix for Diagnostic Classification Models |
dcmle | Hierarchical Models Made Easy with Data Cloning |
dcmodify | Modify Data Using Externally Defined Modification Rules |
DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |
dCovTS | Distance Covariance and Correlation for Time Series Analysis |
dcurver | Utility Functions for Davidian Curves |
dcv | Conventional Cross-validation statistics for climate-growth model |
ddalpha | Depth-Based Classification and Calculation of Data Depth |
DDD | Diversity-Dependent Diversification |
DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |
ddiv | Data Driven I-v Feature Extraction |
DDIwR | DDI with R |
DDM | Death Registration Coverage Estimation |
DDoutlier | Distance & Density-Based Outlier Detection |
ddpcr | Analysis and Visualization of Droplet Digital PCR in R and on the Web |
DDPGPSurv | DDP-GP Survival Analysis |
DDRTree | Learning Principal Graphs with DDRTree |
ddsPLS | Data-Driven Sparse PLS Robust to Missing Samples for Mono and Multi-Block Data Sets |
ddst | Data Driven Smooth Tests |
deadband | Statistical Deadband Algorithms Comparison |
deal | Learning Bayesian Networks with Mixed Variables |
deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |
deaR | Conventional and Fuzzy Data Envelopment Analysis |
deBInfer | Bayesian Inference for Differential Equations |
debugme | Debug R Packages |
debugr | Debug Tool to Watch Objects/Expressions While Running an R Script |
DECIDE | DEComposition of Indirect and Direct Effects |
decido | Bindings for 'Mapbox' Ear Cutting Triangulation Library |
decision | Statistical Decision Analysis |
DecisionAnalysis | Implementation of Multi Objective Decision Analysis |
decisionSupport | Quantitative Support of Decision Making under Uncertainty |
deckgl | An R Interface to 'deck.gl' |
DeclareDesign | Declare and Diagnose Research Designs |
decode | Differential Co-Expression and Differential Expression Analysis |
decoder | Decode Coded Variables to Plain Text and the Other Way Around |
decomposedPSF | Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD) |
decompr | Global-Value-Chain Decomposition |
decon | Deconvolution Estimation in Measurement Error Models |
deconstructSigs | Identifies Signatures Present in a Tumor Sample |
deconvolveR | Empirical Bayes Estimation Strategies |
DecorateR | Fit and Deploy DECORATE Trees |
Deducer | A Data Analysis GUI for R |
DeducerPlugInExample | Deducer Plug-in Example |
DeducerPlugInScaling | Reliability and factor analysis plugin |
DeducerSpatial | Deducer for spatial data analysis |
DeducerSurvival | Add Survival Dialogue to Deducer |
DeducerText | Deducer GUI for Text Data |
deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |
deductive | Data Correction and Imputation Using Deductive Methods |
deepboost | Deep Boosting Ensemble Modeling |
deeplr | Interface to the 'DeepL' Translation API |
deepnet | deep learning toolkit in R |
DEEPR | Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test |
default | Change the Default Arguments in R Functions |
define | Create FDA-Style Data and Program Definitions |
deflateBR | Deflate Nominal Brazilian Reais |
deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |
degenes | Detection of differentially expressed genes |
deGradInfer | Parameter Inference for Systems of Differential Equation |
degreenet | Models for Skewed Count Distributions Relevant to Networks |
deisotoper | Detection of Isotope Pattern of a Mass Spectrometric Measurement |
dejaVu | Multiple Imputation for Recurrent Events |
Delaporte | Statistical Functions for the Delaporte Distribution |
DelayedEffect.Design | Sample Size and Power Calculations using the APPLE and SEPPLE Methods |
deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
DeLorean | Estimates Pseudotimes for Single Cell Expression Data |
delt | Estimation of Multivariate Densities Using Adaptive Partitions |
Delta | Measure of Agreement Between Two Raters |
deltaPlotR | Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method |
deltar | Calculation of Delta R Values |
Demerelate | Functions to Calculate Relatedness on Diploid Genetic Data |
DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values |
demi | Differential Expression from Multiple Indicators |
deming | Deming, Theil-Sen, Passing-Bablock and Total Least Squares Regression |
DemoDecomp | Decompose Demographic Functions |
demogR | Analysis of Age-Structured Demographic Models |
demoGraphic | Providing Demographic Table with the P-Value, Standardized Mean Difference Value |
demography | Forecasting Mortality, Fertility, Migration and Population Data |
demoKde | Kernel Density Estimation for Demonstration Purposes |
DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |
demu | Optimal Design Emulators via Point Processes |
dendextend | Extending 'dendrogram' Functionality in R |
dendroextras | Extra Functions to Cut, Label and Colour Dendrogram Clusters |
dendrometeR | Analyzing Dendrometer Data |
DendroSync | A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies |
dendroTools | Linear and Nonlinear Methods for Analyzing Dendroclimatological Data |
DendSer | Dendrogram seriation: ordering for visualisation |
dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |
DengueRT | Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak |
denoiSeq | Differential Expression Analysis Using a Bottom-Up Model |
denoiseR | Regularized Low Rank Matrix Estimation |
denovolyzeR | Statistical Analyses of De Novo Genetic Variants |
denpro | Visualization of Multivariate Functions, Sets, and Data |
denseFLMM | Functional Linear Mixed Models for Densely Sampled Data |
Density.T.HoldOut | Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation |
densityClust | Clustering by Fast Search and Find of Density Peaks |
DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |
densratio | Density Ratio Estimation |
denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |
DEoptim | Global Optimization by Differential Evolution |
DEoptimR | Differential Evolution Optimization in Pure R |
depend.truncation | Statistical Methods for the Analysis of Dependently Truncated Data |
DEploid | Deconvolute Mixed Genomes with Unknown Proportions |
depmix | Dependent Mixture Models |
depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |
depth | Nonparametric Depth Functions for Multivariate Analysis |
depth.plot | Multivariate Analogy of Quantiles |
DepthProc | Statistical Depth Functions for Multivariate Analysis |
depthTools | Depth Tools Package |
dequer | Stacks, Queues, and 'Deques' for R |
Deriv | Symbolic Differentiation |
derivmkts | Functions and R Code to Accompany Derivatives Markets |
DES | Discrete Event Simulation |
desc | Manipulate DESCRIPTION Files |
descomponer | Seasonal Adjustment by Frequency Analysis |
descr | Descriptive Statistics |
DescribeDisplay | An Interface to the 'DescribeDisplay' 'GGobi' Plugin |
describer | Describe Data in R Using Common Descriptive Statistics |
DescriptiveStats.OBeu | Descriptive Statistics 'OpenBudgets.eu' |
descriptr | Generate Descriptive Statistics |
descstatsr | Descriptive Univariate Statistics |
desctable | Produce Descriptive and Comparative Tables Easily |
DescTools | Tools for Descriptive Statistics |
DescToolsAddIns | Some Functions to be Used as Shortcuts in 'RStudio' |
deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |
designGG | Computational tool for designing genetical genomics experiments |
designGLMM | Finding Optimal Block Designs for a Generalised Linear Mixed Model |
DesignLibrary | Library of Research Designs |
designmatch | Matched Samples that are Balanced and Representative by Design |
desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |
desirability | Function Optimization and Ranking via Desirability Functions |
desire | Desirability functions in R |
DESnowball | Bagging with Distance-based Regression for Differential Gene Expression Analyses |
deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE') |
desplot | Plotting Field Plans for Agricultural Experiments |
detect | Analyzing Wildlife Data with Detection Error |
detector | Detect Data Containing Personally Identifiable Information |
detectRUNS | Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes |
deTestSet | Test Set for Differential Equations |
DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |
detpack | Density Estimation and Random Number Generation with Distribution Element Trees |
DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |
detrendeR | Start the detrendeR Graphical User Interface (GUI) |
detrendr | Detrend Images |
DetSel | A computer program to detect markers responding to selection |
detzrcr | Compare Detrital Zircon Suites |
devEMF | EMF Graphics Output Device |
devFunc | Clear and Condense Argument Check for User-Defined Functions |
DEVis | A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation |
Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
devRate | Quantify the Relationship Between Development Rate and Temperature in Ectotherms |
devtools | Tools to Make Developing R Packages Easier |
dexter | Data Management and Analysis of Tests |
dextergui | A Graphical User Interface for Dexter |
dexterMST | CML Calibration of Multi Stage Tests |
df2json | Convert a dataframe to JSON |
dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |
dfCompare | Compare Two Dataframes and Return Adds, Changes, and Deletes |
dfcrm | Dose-Finding by the Continual Reassessment Method |
dfexplore | Explore data.frames by plotting NA and classes of each variable |
DFIT | Differential Functioning of Items and Tests |
dfmeta | Meta-Analysis of Phase I Dose-Finding Early Clinical Trials |
dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |
dfoptim | Derivative-Free Optimization |
Dforest | Decision Forest |
dfped | Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies |
dfphase1 | Phase I Control Charts (with Emphasis on Distribution-Free Methods) |
dfpk | Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials |
dga | Capture-Recapture Estimation using Bayesian Model Averaging |
dGAselID | Genetic Algorithm with Incomplete Dominance for Feature Selection |
DGCA | Differential Gene Correlation Analysis |
dggridR | Discrete Global Grids |
dglars | Differential Geometric Least Angle Regression |
dglm | Double Generalized Linear Models |
DGM | Dynamic Graphical Models |
dgmb | Simulating Data for PLS Mode B Structural Models |
dgo | Dynamic Estimation of Group-Level Opinion |
dgodata | Data for the 'dgo' Package |
dgof | Discrete Goodness-of-Fit Tests |
DGVM3D | 3D Forest Simulation Visualization Tool |
DHARMa | Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models |
dhga | Differential Hub Gene Analysis |
dhglm | Double Hierarchical Generalized Linear Models |
dhh | A Heavy-Headed Distribution |
DHS.rates | Calculates Demographic Indicators |
dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |
di | Deficit Index (DI) |
diagis | Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling |
diagmeta | Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints |
diagonals | Block Diagonal Extraction or Replacement |
diagram | Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams |
DiagrammeR | Graph/Network Visualization |
DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |
DiallelAnalysisR | Diallel Analysis with R |
dials | Tools for Creating Tuning Parameter Values |
diaplt | Beads Summary Plot of Ranges |
dice | Calculate probabilities of various dice-rolling events |
DiceDesign | Designs of Computer Experiments |
DiceEval | Construction and Evaluation of Metamodels |
DiceKriging | Kriging Methods for Computer Experiments |
DiceOptim | Kriging-Based Optimization for Computer Experiments |
diceR | Diverse Cluster Ensemble in R |
DiceView | Plot Methods for Computer Experiments Design and Surrogate |
dichromat | Color Schemes for Dichromats |
dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |
DIconvex | Finding Patterns of Monotonicity and Convexity in Data |
did | Treatment Effects with Multiple Periods and Groups |
DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |
Diderot | Bibliographic Network Analysis |
didrooRFM | Compute Recency Frequency Monetary Scores for your Customer Data |
dief | Metrics for Continuous Efficiency |
dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics |
diezeit | R Interface to the ZEIT ONLINE Content API |
DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |
difconet | Differential Coexpressed Networks |
DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |
diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |
diffdf | Dataframe Difference Tool |
diffee | Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure |
diffEq | Functions from the book Solving Differential Equations in R |
diffeqr | Solving Differential Equations (ODEs, SDEs, DDEs, DAEs) |
diffeR | Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables |
diffIRT | Diffusion IRT Models for Response and Response Time Data |
diffMeanVar | Detecting Gene Probes with Different Means or Variances Between Two Groups |
diffMeshGP | Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model |
DiffNet | Detection of Statistically Significant Changes in Complex Biological Networks |
diffobj | Diffs for R Objects |
diffpriv | Easy Differential Privacy |
diffr | Display Differences Between Two Files using Codediff Library |
diffrprojects | Projects for Text Version Comparison and Analytics in R |
diffrprojectswidget | Visualization for 'diffrprojects' |
diffusion | Forecast the Diffusion of New Products |
diffusionMap | Diffusion Map |
DiffusionRgqd | Inference and Analysis for Generalized Quadratic Diffusions |
DiffusionRimp | Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines |
DiffusionRjgqd | Inference and Analysis for Jump Generalized Quadratic Diffusions |
diffusr | Network Diffusion Algorithms |
DIFlasso | A Penalty Approach to Differential Item Functioning in Rasch Models |
difNLR | DIF and DDF Detection by Non-Linear Regression Models |
difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |
DIFtree | Item Focussed Trees for the Identification of Items in Differential Item Functioning |
digest | Create Compact Hash Digests of R Objects |
Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |
digitalPCR | Estimate Copy Number for Digital PCR |
digitize | Use Data from Published Plots in R |
dils | Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links |
DIME | DIME (Differential Identification using Mixture Ensemble) |
DIMORA | Diffusion Models R Analysis |
dimRed | A Framework for Dimensionality Reduction |
dina | Bayesian Estimation of DINA Model |
dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |
dineq | Decomposition of (Income) Inequality |
dint | A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates |
DiPhiSeq | Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data |
DiPs | Directional Penalties for Optimal Matching in Observational Studies |
diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |
DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |
DirectedClustering | Directed Weighted Clustering Coefficient |
DirectEffects | Estimating Controlled Direct Effects for Explaining Causal Findings |
Directional | Directional Statistics |
directlabels | Direct Labels for Multicolor Plots |
directotree | Creates an Interactive Tree Structure of a Directory |
directPA | Direction Analysis for Pathways and Kinases |
DirectStandardisation | Adjusted Means and Proportions by Direct Standardisation |
dirichletprocess | Build Dirichlet Process Objects for Bayesian Modelling |
DirichletReg | Dirichlet Regression in R |
dirmcmc | Directional Metropolis Hastings Algorithm |
dirmult | Estimation in Dirichlet-Multinomial distribution |
discgolf | Discourse API Client |
disclap | Discrete Laplace Exponential Family |
disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |
disco | Discordance and Concordance of Transcriptomic Responses |
discord | Functions for Discordant Kinship Modeling |
discoveR | Exploratory Data Analysis System |
discretecdAlgorithm | Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks |
DiscreteFDR | Multiple Testing Procedures with Adaptation for Discrete Tests |
DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |
DiscreteLaplace | Discrete Laplace Distributions |
discreteMTP | Multiple testing procedures for discrete test statistics |
discreteRV | Create and Manipulate Discrete Random Variables |
DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |
discretization | Data preprocessing, discretization for classification |
discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs) |
DiscriMiner | Tools of the Trade for Discriminant Analysis |
discSurv | Discrete Time Survival Analysis |
diseasemapping | Modelling Spatial Variation in Disease Risk for Areal Data |
DisHet | Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples |
DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |
DisImpact | Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups |
diskImageR | A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays |
dismo | Species Distribution Modeling |
disparityfilter | Disparity Filter Algorithm for Weighted Networks |
displayHTS | displayHTS |
dispmod | Modelling Dispersion in GLM |
disposables | Create Disposable R Packages for Testing |
dispRity | Measuring Disparity in R |
dissever | Spatial Downscaling using the Dissever Algorithm |
dissUtils | Utilities for making pairwise comparisons of multivariate data |
Distance | Distance Sampling Detection Function and Abundance Estimation |
distance.sample.size | Calculates Study Size Required for Distance Sampling |
distances | Tools for Distance Metrics |
DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |
distcomp | Computations over Distributed Data without Aggregation |
distcrete | Discrete Distribution Approximations |
distdichoR | Distributional Method for the Dichotomisation of Continuous Outcomes |
distdrawr | Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database |
distfree.cr | Distribution-Free Confidence Region |
distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |
disto | Unified Interface to Distance, Dissimilarity, Similarity Matrices |
distory | Distance Between Phylogenetic Histories |
distr | Object Oriented Implementation of Distributions |
distrDoc | Documentation for 'distr' Family of R Packages |
distreg.vis | Framework for the Visualization of Distributional Regression Models |
distrEllipse | S4 Classes for Elliptically Contoured Distributions |
distrEx | Extensions of Package 'distr' |
DISTRIB | Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach |
DistributionUtils | Distribution Utilities |
distrMod | Object Oriented Implementation of Probability Models |
distrom | Distributed Multinomial Regression |
distrr | Estimate and Manage Empirical Distributions |
distrRmetrics | Distribution Classes for Distributions from Rmetrics |
distrSim | Simulation Classes Based on Package 'distr' |
distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |
distrTEst | Estimation and Testing Classes Based on Package 'distr' |
divagis | Provides tools for quality checks of georeferenced plant species accessions |
divDyn | Diversity Dynamics using Fossil Sampling Data |
diveMove | Dive Analysis and Calibration |
diverse | Diversity Measures for Complex Systems |
diversitree | Comparative 'Phylogenetic' Analyses of Diversification |
diveRsity | A Comprehensive, General Purpose Population Genetics Analysis Package |
DiversityOccupancy | Building Diversity Models from Multiple Species Occupancy Models |
divest | Get Images Out of DICOM Format Quickly |
DivMelt | HRM Diversity Assay Analysis Tool |
divo | Tools for Analysis of Diversity and Similarity in Biological Systems |
dixon | Nearest Neighbour Contingency Table Analysis |
DJL | Distance Measure Based Judgment and Learning |
dkanr | Client for the 'DKAN' API |
dkDNA | Diffusion Kernels on a Set of Genotypes |
dLagM | Time Series Regression Models with Distributed Lag Models |
DLASSO | Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models |
dlbayes | Use Dirichlet Laplace Prior to Solve Linear Regression Problem and Do Variable Selection |
dlib | Allow Access to the 'Dlib' C++ Library |
dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
dlmap | Detection Localization Mapping for QTL |
DLMtool | Data-Limited Methods Toolkit |
dlnm | Distributed Lag Non-Linear Models |
dlookr | Tools for Data Diagnosis, Exploration, Transformation |
dlsem | Distributed-Lag Linear Structural Equation Models |
dlstats | Download Stats of R Packages |
dma | Dynamic Model Averaging |
dmai | Divisia Monetary Aggregates Index |
dml | Distance Metric Learning in R |
dmm | Dyadic Mixed Model for Pedigree Data |
DMMF | Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model |
dMod | Dynamic Modeling and Parameter Estimation in ODE Models |
DMRMark | DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data |
DMRnet | Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data |
dmt | Dependency Modeling Toolkit |
dmutate | Mutate Data Frames with Random Variates |
DMwR | Functions and data for "Data Mining with R" |
DMwR2 | Functions and Data for the Second Edition of "Data Mining with R" |
dna | Differential Network Analysis |
DNAseqtest | Generating and Testing DNA Sequences |
DNAtools | Tools for Analysing Forensic Genetic DNA Data |
DnE | Distribution and Equation |
dnet | Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |
DNetFinder | Estimating Differential Networks under Semiparametric Gaussian Graphical Models |
dng | Distributions and Gradients |
DNLC | Differential Network Local Consistency Analysis |
DNMF | Discriminant Non-Negative Matrix Factorization |
dnr | Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family |
DOBAD | Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains |
dobson | Data from the GLM Book by Dobson and Barnett |
doBy | Groupwise Statistics, LSmeans, Linear Contrasts, Utilities |
docker | Wraps Docker Python SDK |
dockerfiler | Easy Dockerfile Creation from R |
docopt | Command-Line Interface Specification Language |
docopulae | Optimal Designs for Copula Models |
docstring | Provides Docstring Capabilities to R Functions |
documair | Automatic Documentation for R packages |
document | Run 'roxygen2' on (Chunks of) Single Code Files |
docuSignr | Connect to 'DocuSign' API |
docxtools | Tools for R Markdown to Docx Documents |
docxtractr | Extract Data Tables and Comments from 'Microsoft' 'Word' Documents |
Dodge | Acceptance Sampling Ideas Originated by H.F. Dodge |
dodgr | Distances on Directed Graphs |
DODR | Detection of Differential Rhythmicity |
DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |
DoE.MIParray | Creation of Arrays by Mixed Integer Programming |
DoE.wrapper | Wrapper Package for Design of Experiments Functionality |
DoEstRare | Rare Variant Association Test Based on Position Density Estimation |
doex | One-Way Heteroscedastic ANOVA Tests |
doFuture | A Universal Foreach Parallel Adapter using the Future API of the 'future' Package |
doMC | Foreach Parallel Adaptor for 'parallel' |
Dominance | A Package to Calculate and Visualize Dominance Hierarchies |
dominanceanalysis | Dominance Analysis |
domino | R Console Bindings for the 'Domino Command-Line Client' |
doMPI | Foreach Parallel Adaptor for the Rmpi Package |
doParallel | Foreach Parallel Adaptor for the 'parallel' Package |
doRedis | Foreach parallel adapter for the rredis package |
doremi | Dynamics of Return to Equilibrium During Multiple Inputs |
doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |
DOS | Design of Observational Studies |
dosearch | Causal Effect Identification from Multiple Incomplete Data Sources |
DoseFinding | Planning and Analyzing Dose Finding Experiments |
doSNOW | Foreach Parallel Adaptor for the 'snow' Package |
dosresmeta | Multivariate Dose-Response Meta-Analysis |
dostats | Compute Statistics Helper Functions |
DOT | Render and Export DOT Graphs in R |
DoTC | Distribution of Typicality Coefficients |
dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |
dotenv | Load Environment Variables from '.env' |
dotwhisker | Dot-and-Whisker Plots of Regression Results |
doubcens | Survivor Function Estimation for Doubly Interval-Censored Failure Time Data |
double.truncation | Analysis of Doubly-Truncated Data |
DoubleCone | Test Against Parametric Regression Function |
DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |
DOvalidation | Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation |
Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |
downloader | Download Files over HTTP and HTTPS |
downscale | Downscaling Species Occupancy |
downsize | A Tool to Downsize Large Workflows for Testing |
dpa | Dynamic Path Approach |
dparser | Port of 'Dparser' Package |
DPBBM | Dirichlet Process Beta-Binomial Mixture |
dpcid | Differential Partial Correlation IDentification |
dpcR | Digital PCR Analysis |
dpglasso | Primal Graphical Lasso |
Dpit | Distribution Pitting |
dplR | Dendrochronology Program Library in R |
dplRCon | Concordance for Dendroclimatology |
dplyr | A Grammar of Data Manipulation |
dplyr.teradata | A 'Teradata' Backend for 'dplyr' |
dplyrAssist | RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr' |
dpmixsim | Dirichlet Process Mixture Model Simulation for Clustering and Image Segmentation |
dpmr | Data Package Manager for R |
DPP | Inference of Parameters of Normal Distributions from a Mixture of Normals |
DPpackage | Bayesian Nonparametric Modeling in R |
dprint | Print Tabular Data to Graphics Device |
DPtree | Dirichlet-Based Polya Tree |
DPWeibull | Dirichlet Process Weibull Mixture Model for Survival Data |
dqrng | Fast Pseudo Random Number Generators |
dqshiny | Enhance Shiny Apps with Customizable Modules |
dr | Methods for Dimension Reduction for Regression |
dr4pl | Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model |
dragonking | Statistical Tools to Identify Dragon Kings |
dragulaR | Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library' |
drake | A Pipeline Toolkit for Reproducible Computation at Scale |
drat | 'Drat' R Archive Template |
draw | Wrapper Functions for Producing Graphics |
DRaWR | Discriminative Random Walk with Restart |
DrBats | Data Representation: Bayesian Approach That's Sparse |
drc | Analysis of Dose-Response Curves |
DREGAR | Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR) |
drfit | Dose-Response Data Evaluation |
drgee | Doubly Robust Generalized Estimating Equations |
DriftBurstHypothesis | Calculates the Test-Statistic for the Drift Burst Hypothesis |
driftR | Drift Correcting Water Quality Data |
DrillR | R Driver for Apache Drill |
DrImpute | Imputing Dropout Events in Single-Cell RNA-Sequencing Data |
DrInsight | Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data |
DRIP | Discontinuous Regression and Image Processing |
drLumi | Multiplex Immunoassays Data Analysis |
drmdel | Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples |
DRomics | Dose Response for Omics |
dropR | Analyze Drop Out of an Experiment or Survey |
droptest | Simulates LOX Drop Testing |
DRR | Dimensionality Reduction via Regression |
drsmooth | Dose-Response Modeling with Smoothing Splines |
drtmle | Doubly-Robust Nonparametric Estimation and Inference |
DrugClust | Implementation of a Machine Learning Framework for Predicting Drugs Side Effects |
drugCombo | Drug Interaction Modeling Based on Loewe Additivity Following Harbron's Approach |
ds | Descriptive Statistics |
dsa | Seasonal Adjustment of Daily Time Series |
DSAIDE | Dynamical Systems Approach to Infectious Disease Epidemiology |
DSAIRM | Dynamical Systems Approach to Immune Response Modeling |
dsample | Discretization-Based Direct Random Sample Generation |
DSBayes | Bayesian subgroup analysis in clinical trials |
dse | Dynamic Systems Estimation (Time Series Package) |
DSL | Distributed Storage and List |
dslabs | Data Science Labs |
dslice | Dynamic Slicing |
dsm | Density Surface Modelling of Distance Sampling Data |
dsmodels | A Language to Facilitate Simulation and Visualization of Two-Dimensional Dynamical Systems |
DSpat | Spatial Modelling for Distance Sampling Data |
dsr | Compute Directly Standardized Rates, Ratios and Differences |
dsrTest | Tests and Confidence Intervals on Directly Standardized Rates for Several Methods |
DSsim | Distance Sampling Simulations |
dst | Using the Theory of Belief Functions |
DstarM | Analyze Two Choice Reaction Time Data with the D*M Method |
DStree | Recursive Partitioning for Discrete-Time Survival Trees |
dSVA | Direct Surrogate Variable Analysis |
DSviaDRM | Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms |
DT | A Wrapper of the JavaScript Library 'DataTables' |
dtables | Simplifying Descriptive Frequencies and Statistics |
dtangle | Cell Type Deconvolution from Gene Expressions |
DTAT | Dose Titration Algorithm Tuning |
DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |
DtD | Distance to Default |
DTDA | Doubly truncated data analysis |
DTDA.ni | Doubly Truncated Data Analysis, Non Iterative |
dti | Analysis of Diffusion Weighted Imaging (DWI) Data |
DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |
DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |
dtp | Dynamic Panel Threshold Model |
dtplyr | Data Table Back-End for 'dplyr' |
DTR | Estimation and Comparison of Dynamic Treatment Regimes |
dtree | Decision Trees |
DTRlearn | Learning Algorithms for Dynamic Treatment Regimes |
DTRlearn2 | Statistical Learning Methods for Optimizing Dynamic Treatment Regimes |
DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning |
dtt | Discrete Trigonometric Transforms |
dtw | Dynamic Time Warping Algorithms |
DTWBI | Imputation of Time Series Based on Dynamic Time Warping |
dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |
dtwSat | Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis |
DTWUMI | Imputation of Multivariate Time Series Based on Dynamic Time Warping |
duawranglr | Securely Wrangle Dataset According to Data Usage Agreement |
dub | Unpacking Assignment for Lists via Pattern Matching |
duckduckr | Simple Client for the DuckDuckGo Instant Answer API |
dummies | Create dummy/indicator variables flexibly and efficiently |
dummy | Automatic Creation of Dummies with Support for Predictive Modeling |
dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |
DunnettTests | Software implementation of step-down and step-up Dunnett test procedures |
dupiR | Bayesian inference from count data using discrete uniform priors |
DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |
dvmisc | Faster Computation of Common Statistics and Miscellaneous Functions |
dwapi | A Client for 'data.world' REST API |
DWDLargeR | Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination |
DWLasso | Degree Weighted Lasso |
DWreg | Parametric Regression for Discrete Response |
dyads | Dyadic Network Analysis |
dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |
Dykstra | Quadratic Programming using Cyclic Projections |
DYM | Did You Mean? |
dyn | Time Series Regression |
dynamac | Dynamic Simulation and Testing for Single-Equation ARDL Models |
DynamicDistribution | Dynamically visualized probability distributions and their moments |
DynamicGP | Modelling and Analysis of Dynamic Computer Experiments |
dynamicGraph | dynamicGraph |
dynamichazard | Dynamic Hazard Models using State Space Models |
dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |
dynamo | Fit a Stochastic Dynamical Array Model to Array Data |
DynaRankR | Inferring Longitudinal Dominance Hierarchies |
dynatopmodel | Implementation of the Dynamic TOPMODEL Hydrological Model |
dynaTree | Dynamic Trees for Learning and Design |
dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |
DynClust | Denoising and clustering for dynamical image sequence (2D or 3D)+T |
dyncomp | Complexity of Short and Coarse-Grained Time Series |
dynCorr | Dynamic Correlation Package |
dynetNLAResistance | Resisting Neighbor Label Attack in a Dynamic Network |
dynfrail | Fitting Dynamic Frailty Models with the EM Algorithm |
dynia | Fit Dynamic Intervention Model |
dynlm | Dynamic Linear Regression |
DynNom | Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models |
dynOmics | Fast Fourier Transform to Identify Associations Between Time Course Omics Data |
dynpanel | Dynamic Panel Data Models |
dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |
dynprog | Dynamic Programming Domain-Specific Language |
dynr | Dynamic Modeling in R |
dynRB | Dynamic Range Boxes |
dynsbm | Dynamic Stochastic Block Models |
dynsim | Dynamic Simulations of Autoregressive Relationships |
dynsurv | Dynamic Models for Survival Data |
DynTxRegime | Methods for Estimating Optimal Dynamic Treatment Regimes |
dynutils | Common Functionality for the 'dynverse' Packages |
DySeq | Functions for Dyadic Sequence Analyses |
DZEXPM | Estimation and Prediction of Skewed Spatial Processes |
e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |
eaf | Plots of the Empirical Attainment Function |
Eagle | Multiple Locus Association Mapping on a Genome-Wide Scale |
EAinference | Estimator Augmentation and Simulation-Based Inference |
eAnalytics | Dynamic Web-Based Analytics for the Energy Industry |
earlygating | Properties of Bayesian Early Gating Designs |
earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak |
earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |
earth | Multivariate Adaptive Regression Splines |
earthtones | Derive a Color Palette from a Particular Location on Earth |
EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |
easyAHP | Analytic Hierarchy Process (AHP) |
easyalluvial | Generate Alluvial Plots with a Single Line of Code |
easyanova | Analysis of Variance and Other Important Complementary Analyses |
easyCODA | Compositional Data Analysis in Practice |
easycsv | Load Multiple 'csv' and 'txt' Tables |
easyDes | An Easy Way to Descriptive Analysis |
easyformatr | Tools for Building R Formats |
EasyHTMLReport | EasyHTMLReport |
EasyMARK | Utility functions for working with mark-recapture data |
EasyMx | Easy Model-Builder Functions for 'OpenMx' |
easyNCDF | Tools to Easily Read/Write NetCDF Files into/from Multidimensional R Arrays |
easynls | Easy Nonlinear Model |
easypackages | Easy Loading and Installing of Packages |
easypower | Sample Size Estimation for Experimental Designs |
easyPubMed | Search and Retrieve Scientific Publication Records from PubMed |
easyreg | Easy Regression |
easySdcTable | Easy Interface to the Statistical Disclosure Control Package 'sdcTable' |
easySVG | An Easy SVG Basic Elements Generator |
easyVerification | Ensemble Forecast Verification for Large Data Sets |
eba | Elimination-by-Aspects Models |
ebal | Entropy reweighting to create balanced samples |
EBASS | Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information |
EbayesThresh | Empirical Bayes Thresholding and Related Methods |
ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |
EBEN | Empirical Bayesian Elastic Net |
ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |
EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |
ebimetagenomics | EBI Metagenomics Portal |
EBMAforecast | Ensemble BMA Forecasting |
ebmc | Ensemble-Based Methods for Class Imbalance Problem |
EBPRS | Derive Polygenic Risk Score Based on Emprical Bayes Theory |
EBrank | Empirical Bayes Ranking |
ebSNP | Genotyping and SNP calling using single-sample next generation sequencing data |
ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW) |
ECctmc | Simulation from Endpoint-Conditioned Continuous Time Markov Chains |
ecd | Elliptic Lambda Distribution and Option Pricing Model |
Ecdat | Data Sets for Econometrics |
ecdfHT | Empirical CDF for Heavy Tailed Data |
ecespa | Functions for Spatial Point Pattern Analysis |
ECFsup | Equal Covariance Functions Testing by L2-Norm and Sup-Norm |
Ecfun | Functions for Ecdat |
ECharts2Shiny | Embedding Interactive Charts Generated with ECharts Library into Shiny Applications |
echarts4r | Create Interactive Graphs with 'Echarts JavaScript' Version 4 |
eChem | Simulations for Electrochemistry Experiments |
echo.find | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) |
echogram | Echogram Visualisation and Analysis |
echor | Access EPA 'ECHO' Data |
ecipex | Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models |
ECLRMC | Ensemble Correlation-Based Low-Rank Matrix Completion |
eclust | Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data |
ecm | Build Error Correction Models |
ecmwfr | Interface to 'ECMWF' and 'CDS' Data Web Services |
eco | Ecological Inference in 2x2 Tables |
ecodist | Dissimilarity-Based Functions for Ecological Analysis |
ecoengine | Programmatic Interface to the Web Service Methods Provided by UC Berkeley's Natural History Data |
EcoGenetics | Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
Ecohydmod | Ecohydrological Modelling |
EcoHydRology | A Community Modeling Foundation for Eco-Hydrology |
EcoIndR | Ecological Indicators |
ECoL | Complexity Measures for Classification Problems |
ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |
ecolottery | Coalescent-Based Simulation of Ecological Communities |
EconDemand | General Analysis of Various Economics Demand Systems |
econet | Estimation of Parameter-Dependent Network Centrality Measures |
EcoNetGen | Simulate and Sample from Ecological Interaction Networks |
econetwork | Analyzing Ecological Networks |
econullnetr | Null Model Analysis for Ecological Networks |
ecoreg | Ecological Regression using Aggregate and Individual Data |
ecoseries | An R Interface to Brazilian Central Bank and Sidra APIs and the IPEA Data |
ecosim | Toolbox for Aquatic Ecosystem Modeling |
EcoSimR | Null Model Analysis for Ecological Data |
ECOSolveR | Embedded Conic Solver in R |
ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |
ecospat | Spatial Ecology Miscellaneous Methods |
ecotox | Analysis of Ecotoxicology |
ecotoxicology | Methods for Ecotoxicology |
EcoTroph | EcoTroph R package |
ecoval | Procedures for Ecological Assessment of Surface Waters |
EcoVirtual | Simulation of Ecological Models |
ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |
ecr | Evolutionary Computation in R |
ectotemp | Quantitative Estimates of Small Ectotherm Temperature Regulation Effectiveness |
ed50 | Estimate ED50 and Its Confidence Interval |
EDA | Energy Decomposition Analysis |
eda4treeR | Experimental Design and Analysis for Tree Improvement |
edarf | Exploratory Data Analysis using Random Forests |
edcc | Economic Design of Control Charts |
edci | Edge Detection and Clustering in Images |
edeaR | Exploratory and Descriptive Event-Based Data Analysis |
edeR | Email Data Extraction Using R |
edesign | Maximum Entropy Sampling |
edf | Read Data from European Data Format (EDF and EDF+) Files |
EDFIR | Estimating Discrimination Factors |
edfReader | Reading EDF(+) and BDF(+) Files |
edfun | Creating Empirical Distribution Functions |
edgar | Platform for EDGAR Filing Management |
edgarWebR | SEC Filings Access |
edgebundleR | Circle Plot with Bundled Edges |
edgeCorr | Spatial Edge Correction |
edgeRun | More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data |
EDISON | Network Reconstruction and Changepoint Detection |
editData | 'RStudio' Addin for Editing a 'data.frame' |
EditImputeCont | Simultaneous Edit-Imputation for Continuous Microdata |
editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |
eDMA | Dynamic Model Averaging with Grid Search |
EDMeasure | Energy-Based Dependence Measures |
edpclient | Empirical Data Platform Client |
EDR | Estimation of the Effective Dimension Reduction ('EDR') Space |
edrGraphicalTools | Provides Tools for Dimension Reduction Methods |
edstan | Stan Models for Item Response Theory |
EdSurvey | Analysis of NCES Education Survey and Assessment Data |
educineq | Compute and Decompose Inequality in Education |
eefAnalytics | Analysing Education Trials |
eegkit | Toolkit for Electroencephalography Data |
eegkitdata | Data for package eegkit |
eel | Extended Empirical Likelihood |
EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |
eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |
eeptools | Convenience Functions for Education Data |
eesim | Simulate and Evaluate Time Series for Environmental Epidemiology |
EFAutilities | Utility Functions for Exploratory Factor Analysis |
EFDR | Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images |
effectFusion | Bayesian Effect Fusion for Categorical Predictors |
EffectLiteR | Average and Conditional Effects |
effectR | Predicts Oomycete Effectors |
effects | Effect Displays for Linear, Generalized Linear, and Other Models |
effectsizescr | Indices for Single-Case Research |
EffectsRelBaseline | Test changes of a grouped response relative to baseline |
EffectStars | Visualization of Categorical Response Models |
EffectStars2 | Effect Stars |
EffectTreat | Prediction of Therapeutic Success |
EfficientMaxEigenpair | Efficient Initials for Computing the Maximal Eigenpair |
efflog | The Causal Effects for a Causal Loglinear Model |
effsize | Efficient Effect Size Computation |
efreadr | Read European Eddy Fluxes CSV Files |
EFS | Tool for Ensemble Feature Selection |
efts | High-Level Functions to Read and Write Ensemble Forecast Time Series in netCDF |
ega | Error Grid Analysis |
egcm | Engle-Granger Cointegration Models |
egg | Extensions for 'ggplot2': Custom Geom, Plot Alignment, Symmetrised Scale, and Fixed Panel Size |
eggCounts | Hierarchical Modelling of Faecal Egg Counts |
egonet | Tool for ego-centric measures in Social Network Analysis |
egor | Import and Analyse Ego-Centered Network Data |
egoTERGM | Estimation of Ego-Temporal Exponential Random Graph Models via Expectation Maximization (EM) |
EGRET | Exploration and Graphics for RivEr Trends |
EGRETci | Exploration and Graphics for RivEr Trends Confidence Intervals |
eha | Event History Analysis |
eHOF | Extended HOF (Huisman-Olff-Fresco) Models |
EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool |
ei | Ecological Inference |
EIAdata | R Wrapper for the Energy Information Administration (EIA) API |
eiCompare | Compares EI, Goodman, RxC Estimates |
eigeninv | Generates (dense) matrices that have a given set of eigenvalues |
eigenmodel | Semiparametric Factor and Regression Models for Symmetric Relational Data |
eigenprcomp | Computes confidence intervals for principal components |
eikosograms | The Picture of Probability |
EILA | Efficient Inference of Local Ancestry |
eiPack | Ecological Inference and Higher-Dimension Data Management |
eive | An Algorithm for Reducing Errors-in-Variable Bias in Simple Linear Regression |
eivtools | Measurement Error Modeling Tools |
eiwild | Ecological Inference with individual and aggregate data |
eixport | Export Emissions to Atmospheric Models |
EKMCMC | MCMC Procedures for Estimating Enzyme Kinetics Constants |
EL | Two-sample Empirical Likelihood |
EL2Surv | Empirical Likelihood (EL) for Comparing Two Survival Functions |
elasso | Enhanced Least Absolute Shrinkage and Selection Operator Regression Model |
ElastH | Replicar metodologia de SPE/MF para calculo de elasticidade de receita |
elastic | General Purpose Interface to 'Elasticsearch' |
elasticIsing | Ising Network Estimation using Elastic Net and k-Fold Cross-Validation |
elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |
elasticsearchr | A Lightweight Interface for Interacting with Elasticsearch from R |
elec | Collection of Functions for Statistical Election Audits |
elec.strat | Functions for election audits using stratified random samples |
elect | Estimation of Life Expectancies Using Multi-State Models |
elections | USA Presidential Elections Data |
electionsBR | R Functions to Download and Clean Brazilian Electoral Data |
electoral | Allocating Seats Methods and Party System Scores |
elementR | An Framework for Reducing Elemental LAICPMS Data from Solid Structures |
ElemStatLearn | Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |
elevatr | Access Elevation Data from Various APIs |
elexr | Load Associated Press Election Results with Elex |
elhmc | Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo |
elliplot | Ellipse Summary Plot of Quantiles |
ellipse | Functions for Drawing Ellipses and Ellipse-Like Confidence Regions |
ellipsis | Tools for Working with ... |
elliptic | Weierstrass and Jacobi Elliptic Functions |
elmNNRcpp | The Extreme Learning Machine Algorithm |
ELMR | Extreme Machine Learning (ELM) |
ELMSO | Implementation of the Efficient Large-Scale Online Display Advertising Algorithm |
elo | Elo Ratings |
EloOptimized | Optimized Elo Rating Method for Obtaining Dominance Ranks |
ElstonStewart | Elston-Stewart Algorithm |
ELT | Experience Life Tables |
ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |
EM.Fuzzy | EM Algorithm for Maximum Likelihood Estimation by Non-Precise Information |
EMA | Easy Microarray Data Analysis |
EMAtools | Data Management Tools for Real-Time Monitoring/Ecological Momentary Assessment Data |
EMbC | Expectation-Maximization Binary Clustering |
embed | Extra Recipes for Encoding Categorical Predictors |
embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |
EMC | Evolutionary Monte Carlo (EMC) algorithm |
Emcdf | Computation and Visualization of Empirical Joint Distribution (Empirical Joint CDF) |
EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |
EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |
emdbook | Support Functions and Data for "Ecological Models and Data" |
emdi | Estimating and Mapping Disaggregated Indicators |
emdist | Earth Mover's Distance |
emg | Exponentially Modified Gaussian (EMG) Distribution |
emhawkes | Exponential Multivariate Hawkes Model |
emil | Evaluation of Modeling without Information Leakage |
emIRT | EM Algorithms for Estimating Item Response Theory Models |
EmissV | Vehicular Emissions by Top-Down Methods |
EmiStatR | Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems |
EML | Read and Write Ecological Metadata Language Files |
eMLEloglin | Fitting log-Linear Models in Sparse Contingency Tables |
emma | Evolutionary model-based multiresponse approach |
EMMAgeo | End-Member Modelling of Grain-Size Data |
emme2 | Read and Write to an EMME/2 databank |
emmeans | Estimated Marginal Means, aka Least-Squares Means |
EMMIXcskew | Fitting Mixtures of CFUST Distributions |
EMMIXgene | A Mixture Model-Based Approach to the Clustering of Microarray Expression Data |
EMMIXmfa | Mixture Models with Component-Wise Factor Analyzers |
EMMIXskew | The EM Algorithm and Skew Mixture Distribution |
EMMLi | A Maximum Likelihood Approach to the Analysis of Modularity |
EMMREML | Fitting Mixed Models with Known Covariance Structures |
emoa | Evolutionary Multiobjective Optimization Algorithms |
emojifont | Emoji and Font Awesome in Graphics |
emon | Tools for Environmental and Ecological Survey Design |
emov | Eye Movement Analysis Package for Fixation and Saccade Detection |
EMP | Expected Maximum Profit Classification Performance Measure |
empirical | Probability Distributions as Models of Data |
EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |
empiricalFDR.DESeq2 | Simulation-Based False Discovery Rate in RNA-Seq |
emplik | Empirical Likelihood Ratio for Censored/Truncated Data |
emplik2 | Empirical Likelihood Ratio Test for Two Samples with Censored Data |
ems | Epimed Solutions Collection for Data Editing, Analysis, and Benchmark of Health Units |
EMSaov | The Analysis of Variance with EMS |
EMSC | Extended Multiplicative Signal Correction |
EMSHS | EM Algorithm for Bayesian Shrinkage Approach with Structural Information Incorporated |
emstreeR | Fast Computing Euclidean Minimum Spanning Trees |
EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |
emulator | Bayesian Emulation of Computer Programs |
emuR | Main Package of the EMU Speech Database Management System |
EMVS | The Expectation-Maximization Approach to Bayesian Variable Selection |
enaR | Tools for Ecological Network Analysis |
enc | Portable Tools for 'UTF-8' Character Data |
EncDNA | Encoding of Nucleotide Sequences into Numeric Feature Vectors |
encode | Represent Ordered Lists and Pairs as Strings |
endogenous | Classical Simultaneous Equation Models |
endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |
endorse | Bayesian Measurement Models for Analyzing Endorsement Experiments |
endtoend | Transmissions and Receptions in an End to End Network |
energy | E-Statistics: Multivariate Inference via the Energy of Data |
EnergyOnlineCPM | Distribution Free Multivariate Control Chart Based on Energy Test |
energyr | Data Published by the United States Federal Energy Regulatory Commission |
enetLTS | Robust and Sparse Methods for High Dimensional Linear and Logistic Regression |
eNetXplorer | Quantitative Exploration of Elastic Net Families for Generalized Linear Models |
english | Translate Integers into English |
EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |
engsoccerdata | English and European Soccer Results 1871-2016 |
ENiRG | Ecological Niche in R and GRASS |
ENMeval | Automated Runs and Evaluations of Ecological Niche Models |
ENmisc | Neuwirth miscellaneous |
enpls | Ensemble Partial Least Squares Regression |
enrichR | Provides an R Interface to 'Enrichr' |
enrichvs | Enrichment assessment of virtual screening approaches |
enrichwith | Methods to Enrich R Objects with Extra Components |
EnsCat | Clustering of Categorical Data |
EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |
ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |
EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |
ensembleEN | Ensembling Regularized Linear Models |
ensembleMOS | Ensemble Model Output Statistics |
EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning |
EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners |
ensemblepp | Ensemble Postprocessing Data Sets |
ensembleR | Ensemble Models in R |
ensr | Elastic Net SearcheR |
ensurer | Ensure Values at Runtime |
entropart | Entropy Partitioning to Measure Diversity |
entropy | Estimation of Entropy, Mutual Information and Related Quantities |
EntropyEstimation | Estimation of Entropy and Related Quantities |
EntropyExplorer | Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression |
envalysis | Miscellaneous Functions for Environmental Analyses |
EnvCpt | Detection of Structural Changes in Climate and Environment Time Series |
envDocument | Document the R Working Environment |
enveomics.R | Various Utilities for Microbial Genomics and Metagenomics |
enviGCMS | GC/LC-MS Data Analysis for Environmental Science |
enviPat | Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry |
enviPick | Peak Picking for High Resolution Mass Spectrometry Data |
envirem | Generation of ENVIREM Variables |
EnviroPRA | Environmental Probabilistic Risk Assessment Tools |
EnviroStat | Statistical Analysis of Environmental Space-Time Processes |
envlpaster | Enveloping the Aster Model |
envnames | Track User-Defined Environment Names |
EnvNicheR | Niche Estimation |
EnvStats | Package for Environmental Statistics, Including US EPA Guidance |
epade | Easy Plots |
epandist | Statistical Functions for the Censored and Uncensored Epanechnikov Distribution |
epanet2toolkit | Call 'EPANET' Functions to Simulate Pipe Networks |
epanetReader | Read Epanet Files into R |
ePCR | Ensemble Penalized Cox Regression for Survival Prediction |
Epi | A Package for Statistical Analysis in Epidemiology |
epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |
epicontacts | Handling, Visualisation and Analysis of Epidemiological Contacts |
EpiContactTrace | Epidemiological Tool for Contact Tracing |
EpiCurve | Plot an Epidemic Curve |
epidata | Tools to Retrieve Economic Policy Institute Data Library Extracts |
epiDisplay | Epidemiological Data Display Package |
EpiDynamics | Dynamic Models in Epidemiology |
EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves |
epiflows | Predicting Disease Spread from Flow Data |
epiGWAS | Robust Methods for Epistasis Detection |
EpiILM | Spatial and Network Based Individual Level Models for Epidemics |
EpiILMCT | Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics |
epimdr | Functions and Data for "Epidemics: Models and Data in R" |
EpiModel | Mathematical Modeling of Infectious Disease Dynamics |
epinet | Epidemic/Network-Related Tools |
epiphy | Analysis of Plant Disease Epidemics |
epiR | Tools for the Analysis of Epidemiological Data |
EpiReport | Epidemiological Report |
episcan | Scan Pairwise Epistasis |
episensr | Basic Sensitivity Analysis of Epidemiological Results |
episheet | Rothman's Episheet |
EpiSignalDetection | Signal Detection Analysis |
episode | Estimation with Penalisation in Systems of Ordinary Differential Equations |
episplineDensity | Density Estimation with Soft Information by Exponential Epi-splines |
epistasis | Detecting Epistatic Selection with Partially Observed Genotype Data |
EpiStats | Tools for Epidemiologists |
EpistemicGameTheory | Constructing an Epistemic Model for the Games with Two Players |
epitab | Flexible Contingency Tables for Epidemiology |
epitools | Epidemiology Tools |
epitrix | Small Helpers and Tricks for Epidemics Analysis |
Eplot | Plotting longitudinal series |
eplusr | A Toolkit for Using Whole Building Simulation Program 'EnergyPlus' |
eply | Apply a Function Over Expressions |
epoc | Endogenous Perturbation Analysis of Cancer |
epos | Epilepsy Ontology Similarities |
epr | Easy Polynomial Regression |
epubr | Read EPUB File Metadata and Text |
epxToR | Import 'Epidata' XML Files '.epx' |
EQL | Extended-Quasi-Likelihood-Function (EQL) |
eqs2lavaan | EQS Output Conversion to lavaan Functions |
eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |
equalCovs | Testing the Equality of Two Covariance Matrices |
Equalden.HD | Testing the Equality of a High Dimensional Set of Densities |
equaltestMI | Examine Measurement Invariance via Equivalence Testing and Projection Method |
equate | Observed-Score Linking and Equating |
equateIRT | IRT Equating Methods |
equateMultiple | Equating of Multiple Forms |
equivalence | Provides Tests and Graphics for Assessing Tests of Equivalence |
EQUIVNONINF | Testing for Equivalence and Noninferiority |
equSA | Estimate Directed and Undirected Graphical Models and Construct Networks |
erah | Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics |
erboost | Nonparametric Multiple Expectile Regression via ER-Boost |
ercv | Fitting Tails by the Empirical Residual Coefficient of Variation |
erer | Empirical Research in Economics with R |
ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |
ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |
ergm.ego | Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data |
ergm.rank | Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data |
ergm.userterms | User-specified Terms for the statnet Suite of Packages |
ergmharris | Local Health Department network data set |
erhcv | Equi-Rank Hierarchical Clustering Validation |
eRm | Extended Rasch Modeling |
ERP | Significance Analysis of Event-Related Potentials Data |
erp.easy | Event-Related Potential (ERP) Data Exploration Made Easy |
erpR | Event-related potentials (ERP) analysis, graphics and utility functions |
err | Customizable Object Sensitive Messages |
errint | Builds Error Intervals |
errorist | Automatically Search Errors or Warnings |
errorizer | Function Errorizer |
errorlocate | Locate Errors with Validation Rules |
errors | Uncertainty Propagation for R Vectors |
ERSA | Exploratory Regression 'Shiny' App |
ES | Edge Selection |
es.dif | Compute Effect Sizes of the Difference |
esaBcv | Estimate Number of Latent Factors and Factor Matrix for Factor Analysis |
esaddle | Extended Empirical Saddlepoint Density Approximation |
esaps | Indicators of Electoral Systems and Party Systems |
esc | Effect Size Computation for Meta Analysis |
esDesign | Adaptive Enrichment Designs with Sample Size Re-Estimation |
ESEA | ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis |
eseis | Environmental Seismology Toolbox |
ESG | ESG - A package for asset projection |
ESGtoolkit | Toolkit for the simulation of financial assets and interest rates models |
eshrink | Shrinkage for Effect Estimation |
ESKNN | Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation |
esmisc | Misc Functions of Eduard Szöcs |
esmprep | Data Preparation During and After the Use of the Experience Sampling Methodology (ESM) |
esquisse | Explore and Visualize Your Data Interactively |
esreg | Joint Quantile and Expected Shortfall Regression |
essHist | The Essential Histogram |
essurvey | Download Data from the European Social Survey on the Fly |
estatapi | R Interface to e-Stat API |
EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |
ESTER | Efficient Sequential Testing with Evidence Ratios |
EstHer | Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection |
estimability | Tools for Assessing Estimability of Linear Predictions |
EstimateGroupNetwork | Perform the Joint Graphical Lasso and Selects Tuning Parameters |
estimatr | Fast Estimators for Design-Based Inference |
estmeansd | Estimating the Sample Mean and Standard Deviation from Commonly Reported Quantiles in Meta-Analysis |
EstMix | Tumor Clones Percentage Estimations |
estout | Estimates Output |
estprod | Estimation of Production Functions |
EstSimPDMP | Estimation and Simulation for PDMPs |
estudy2 | An Implementation of Parametric and Nonparametric Event Study |
esvis | Visualization and Estimation of Effect Sizes |
etable | Easy Table |
ETAS | Modeling Earthquake Data Using 'ETAS' Model |
etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes |
ETC | Equivalence to control |
ether | Interaction with the 'Ethereum' Blockchain |
ethnobotanyR | Calculate Quantitative Ethnobotany Indices |
EthSEQ | Ethnicity Annotation from Whole Exome Sequencing Data |
etl | Extract-Transform-Load Framework for Medium Data |
ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |
etm | Empirical Transition Matrix |
etma | Epistasis Test in Meta-Analysis |
etrunct | Computes Moments of Univariate Truncated t Distribution |
etseed | Client for 'etcd', a 'Key-value' Database |
eulerian | eulerian: A package to find eulerian paths from graphs |
eulerr | Area-Proportional Euler and Venn Diagrams with Ellipses |
europepmc | R Interface to the Europe PubMed Central RESTful Web Service |
europop | Historical Populations of European Cities, 1500-1800 |
EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |
eurostat | Tools for Eurostat Open Data |
ev.trawl | Extreme Value Trawls |
eva | Extreme Value Analysis with Goodness-of-Fit Testing |
EvalEst | Dynamic Systems Estimation - Extensions |
evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |
EvaluationMeasures | Collection of Model Evaluation Measure Functions |
evaluator | Quantified Risk Assessment Toolkit |
EValue | Sensitivity Analyses for Unmeasured Confounding in Observational Studies and Meta-Analyses |
Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |
evclass | Evidential Distance-Based Classification |
evclust | Evidential Clustering |
EvCombR | Evidence Combination in R |
evd | Functions for Extreme Value Distributions |
evdbayes | Bayesian Analysis in Extreme Value Theory |
event | Event History Procedures and Models |
eventdataR | Event Data Repository |
EventDetectR | Event Detection Framework |
eventInterval | Sequential Event Interval Analysis |
events | Store and manipulate event data |
EventStudy | Event Study Analysis |
evian | Evidential Analysis of Genetic Association Data |
evidence | Analysis of Scientific Evidence Using Bayesian and Likelihood Methods |
evidenceFactors | Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies |
evir | Extreme Values in R |
evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |
evobiR | Comparative and Population Genetic Analyses |
evolqg | Tools for Evolutionary Quantitative Genetics |
EvolutionaryGames | Important Concepts of Evolutionary Game Theory |
evolvability | Calculation of Evolvability Parameters |
Evomorph | Evolutionary Morphometric Simulation |
evoper | Evolutionary Parameter Estimation for 'Repast Simphony' Models |
EvoRAG | Evolutionary Rates Across Gradients |
evt0 | Mean of order p, peaks over random threshold Hill and high quantile estimates |
evtclass | Extreme Value Theory for Open Set Classification - GPD and GEV Classifiers |
evtree | Evolutionary Learning of Globally Optimal Trees |
EW | Edgeworth Expansion |
EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |
ewoc | Escalation with Overdose Control |
Exact | Unconditional Exact Test |
exact2x2 | Exact Tests and Confidence Intervals for 2x2 Tables |
exactci | Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases |
ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |
exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
exactmeta | Exact fixed effect meta analysis |
exactRankTests | Exact Distributions for Rank and Permutation Tests |
exampletestr | Help for Writing Unit Tests Based on Function Examples |
exams | Automatic Generation of Exams in R |
ExceedanceTools | Confidence regions for exceedance sets and contour lines |
excel.link | Convenient Data Exchange with Microsoft Excel |
excerptr | Excerpt Structuring Comments from Your Code File and Set a Table of Contents |
ExcessMass | Excess Mass Calculation and Plots |
exCon | Interactive Exploration of Contour Data |
excursions | Excursion Sets and Contour Credibility Regions for Random Fields |
exif | Read EXIF Metadata from JPEGs |
exifr | EXIF Image Data in R |
exiftoolr | ExifTool Functionality from R |
ExomeDepth | Calls Copy Number Variants from Targeted Sequence Data |
exp2flux | Convert Gene EXPression Data to FBA FLUXes |
ExPanDaR | Explore Panel Data Interactively |
expandFunctions | Feature Matrix Builder |
expands | Expanding Ploidy and Allele-Frequency on Nested Subpopulations |
ExpDE | Modular Differential Evolution for Experimenting with Operators |
ExpDes | Experimental Designs |
ExpDes.pt | Pacote Experimental Designs (Portuguese) |
experiment | R Package for Designing and Analyzing Randomized Experiments |
expert | Modeling without data using expert opinion |
expint | Exponential Integral and Incomplete Gamma Function |
ExplainPrediction | Explanation of Predictions for Classification and Regression Models |
explor | Interactive Interfaces for Results Exploration |
exploreR | Tools for Quickly Exploring Data |
expm | Matrix Exponential, Log, 'etc' |
expoRkit | Expokit in R |
export | Streamlined Export of Graphs and Data Tables |
ExPosition | Exploratory Analysis with the Singular Value Decomposition |
expp | Spatial Analysis of Extra-Pair Paternity |
expperm | Computing Expectations and Marginal Likelihoods for Permutations |
ExpRep | Experiment Repetitions |
exprso | Rapid Deployment of Machine Learning Algorithms |
expSBM | An Exponential Stochastic Block Model for Interaction Lengths |
expsmooth | Data Sets from "Forecasting with Exponential Smoothing" |
expss | Tables with Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics |
exptest | Tests for Exponentiality |
exreport | Fast, Reliable and Elegant Reproducible Research |
EXRQ | Extreme Regression of Quantiles |
exsic | Convenience Functions for Botanists to Create Specimens Indices |
extdplyr | Data Manipulation Extensions of 'Dplyr' and 'Tidyr' |
exteriorMatch | Constructs the Exterior Match from Two Matched Control Groups |
extfunnel | Additional Funnel Plot Augmentations |
extlasso | Maximum penalized likelihood estimation with extended lasso penalty |
ExtMallows | An Extended Mallows Model and Its Hierarchical Version for Ranked Data Aggregation |
extraBinomial | Extra-binomial approach for pooled sequencing data |
extracat | Categorical Data Analysis and Visualization |
extraDistr | Additional Univariate and Multivariate Distributions |
extrafont | Tools for using fonts |
extrafontdb | Package for holding the database for the extrafont package |
extraTrees | Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression |
ExtremeBounds | Extreme Bounds Analysis (EBA) |
extremefit | Estimation of Extreme Conditional Quantiles and Probabilities |
extRemes | Extreme Value Analysis |
extremeStat | Extreme Value Statistics and Quantile Estimation |
extremevalues | Univariate Outlier Detection |
extremis | Statistics of Extremes |
extremogram | Estimation of Extreme Value Dependence for Time Series Data |
extWeibQuant | Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture |
exuber | Econometric Analysis of Explosive Time Series |
eyelinker | Load Raw Data from Eyelink Eye Trackers |
eyetracking | Eyetracking Helper Functions |
eyetrackingR | Eye-Tracking Data Analysis |
ez | Easy Analysis and Visualization of Factorial Experiments |
ezec | Easy Interface to Effective Concentration Calculations |
ezglm | selects significant non-additive interaction between two variables using fast GLM implementation |
ezknitr | Avoid the Typical Working Directory Pain When Using 'knitr' |
ezpickr | Import Various Data File Types as a Rectangular Form Using a File Picker Dialogue Box |
ezplot | Functions for Common Chart Types |
ezsim | provide an easy to use framework to conduct simulation |
ezsummary | Generate Data Summary in a Tidy Format |
EZtune | Tunes AdaBoost, Support Vector Machines, and Gradient Boosting Machines |
fabCI | FAB Confidence Intervals |
fabMix | Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components |
fabricatr | Imagine Your Data Before You Collect It |
face | Fast Covariance Estimation for Sparse Functional Data |
facebook.S4 | Access to Facebook API V2 via a Set of S4 Classes |
facerec | An Interface for Face Recognition |
facilitation | A C++ Framework for Plant-Plant Interaction IBMs |
FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |
FactMixtAnalysis | Factor Mixture Analysis with covariates |
FACTMLE | Maximum Likelihood Factor Analysis |
FactoClass | Combination of Factorial Methods and Cluster Analysis |
factoextra | Extract and Visualize the Results of Multivariate Data Analyses |
FactoInvestigate | Automatic Description of Factorial Analysis |
FactoMineR | Multivariate Exploratory Data Analysis and Data Mining |
factoptd | Factorial Optimal Designs for Two-Colour cDNA Microarray Experiments |
factorcpt | Simultaneous Change-Point and Factor Analysis |
factorMerger | The Merging Path Plot |
factorplot | Graphical Presentation of Simple Contrasts |
factorQR | Bayesian quantile regression factor models |
FactorsR | Identification of the Factors Affecting Species Richness |
factorstochvol | Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models |
Factoshiny | Perform Factorial Analysis from 'FactoMineR' with a Shiny Application |
factualR | thin wrapper for the Factual.com server API |
FADA | Variable Selection for Supervised Classification in High Dimension |
FAdist | Distributions that are Sometimes Used in Hydrology |
Fahrmeir | Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz |
fail | File Abstraction Interface Layer (FAIL) |
faisalconjoint | Faisal Conjoint Model: A New Approach to Conjoint Analysis |
fakemake | Mock the Unix Make Utility |
fakeR | Simulates Data from a Data Frame of Different Variable Types |
falcon | Finding Allele-Specific Copy Number in Next-Generation Sequencing Data |
falconx | Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data |
fam.recrisk | Familial Recurrence Risk |
fam2r | From 'Familias' to R |
fame | Interface for FAME Time Series Database |
FamEvent | Family Age-at-Onset Data Simulation and Penetrance Estimation |
Familias | Probabilities for Pedigrees Given DNA Data |
FAMILY | A Convex Formulation for Modeling Interactions with Strong Heredity |
FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |
FAMoS | A Flexible Algorithm for Model Selection (FAMoS) |
famSKATRC | Family Sequence Kernel Association Test for Rare and Common Variants |
FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |
fanc | Penalized Likelihood Factor Analysis via Nonconvex Penalty |
fANCOVA | Nonparametric Analysis of Covariance |
fancycut | A Fancy Version of 'base::cut' |
fanovaGraph | Building Kriging Models from FANOVA Graphs |
fanplot | Visualisation of Sequential Probability Distributions Using Fan Charts |
fansi | ANSI Control Sequence Aware String Functions |
FAOSTAT | Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations |
faoutlier | Influential Case Detection Methods for Factor Analysis and Structural Equation Models |
far | Modelization for Functional AutoRegressive Processes |
faraway | Functions and Datasets for Books by Julian Faraway |
farff | A Faster 'ARFF' File Reader and Writer |
FarmSelect | Factor Adjusted Robust Model Selection |
FarmTest | Factor Adjusted Robust Multiple Testing |
farver | Vectorised Colour Conversion and Comparison |
FASeg | Joint Segmentation of Correlated Time Series |
fAsianOptions | Rmetrics - EBM and Asian Option Valuation |
fasjem | A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models |
fAssets | Rmetrics - Analysing and Modelling Financial Assets |
fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |
fasta | Fast Adaptive Shrinkage/Thresholding Algorithm |
fastAdaboost | a Fast Implementation of Adaboost |
FastBandChol | Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor |
fastclime | A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector |
fastcluster | Fast Hierarchical Clustering Routines for R and 'Python' |
fastcmh | Significant Interval Discovery with Categorical Covariates |
fastcox | Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm |
fastdigest | Fast, Low Memory-Footprint Digests of R Objects |
fastDummies | Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables |
fasteraster | Raster Image Processing and Vector Recognition |
fasterElasticNet | An Amazing Fast Way to Fit Elastic Net |
fasterize | Fast Polygon to Raster Conversion |
FastGaSP | Fast and Exact Computation of Gaussian Stochastic Process |
fastGHQuad | Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature |
FastGP | Efficiently Using Gaussian Processes with Rcpp and RcppEigen |
fastGraph | Fast Drawing and Shading of Graphs of Statistical Distributions |
FastHCS | FastHCS Robust Algorithm for Principal Component Analysis |
fastHICA | Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis |
fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |
FastImputation | Learn from Training Data then Quickly Fill in Missing Data |
fastJT | Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies |
FastKM | A Fast Multiple-Kernel Method Based on a Low-Rank Approximation |
FastKNN | Fast k-Nearest Neighbors |
fastLink | Fast Probabilistic Record Linkage with Missing Data |
FastLZeroSpikeInference | Fast Nonconvex Deconvolution of Calcium Imaging Data |
fastM | Fast Computation of Multivariate M-Estimators |
fastmaRching | Fast Marching Method for Modelling Evolving Boundaries |
fastmatch | Fast match() function |
fastnet | Large-Scale Social Network Analysis |
FastPCS | FastPCS Robust Fit of Multivariate Location and Scatter |
fastpseudo | Fast Pseudo Observations |
fastqcr | Quality Control of Sequencing Data |
fastR | Foundations and Applications of Statistics Using R |
fastR2 | Foundations and Applications of Statistics Using R (2nd Edition) |
FastRCS | Fits the FastRCS Robust Multivariable Linear Regression Model |
fastrtext | 'fastText' Wrapper for Text Classification and Word Representation |
FastRWeb | Fast Interactive Framework for Web Scripting Using R |
FastSF | Fast Structural Filtering |
fastSOM | Fast Calculation of Spillover Measures |
fastTextR | An Interface to the 'fastText' Library |
fasttime | Fast Utility Function for Time Parsing and Conversion |
fat2Lpoly | Two-Locus Family-Based Association Test with Polytomous Outcome |
FateID | Quantification of Fate Bias in Multipotent Progenitors |
FatTailsR | Kiener Distributions and Fat Tails in Finance |
fauxpas | HTTP Error Helpers |
favnums | A Dataset of Favourite Numbers |
FAwR | Functions and Datasets for "Forest Analytics with R" |
fbar | An Extensible Approach to Flux Balance Analysis |
fBasics | Rmetrics - Markets and Basic Statistics |
fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |
FBFsearch | Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors |
FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |
fBonds | Rmetrics - Pricing and Evaluating Bonds |
fbRads | Analyzing and Managing Facebook Ads from R |
fbRanks | Association Football (Soccer) Ranking via Poisson Regression |
fbroc | Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves |
fc | Standard Evaluation-Based Multivariate Function Composition |
fcd | Fused Community Detection |
fCertificates | Basics of Certificates and Structured Products Valuation |
FCGR | Fatigue Crack Growth in Reliability |
fChange | Change Point Analysis in Functional Data |
fclust | Fuzzy Clustering |
fcm | Inference of Fuzzy Cognitive Maps (FCMs) |
FCMapper | Fuzzy Cognitive Mapping |
fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |
fcr | Functional Concurrent Regression for Sparse Data |
fcros | A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations |
fcuk | The Ultimate Helper for Clumsy Fingers |
FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |
fda | Functional Data Analysis |
fda.usc | Functional Data Analysis and Utilities for Statistical Computing |
fdadensity | Functional Data Analysis for Density Functions by Transformation to a Hilbert Space |
fdakma | Functional Data Analysis: K-Mean Alignment |
fdaMixed | Functional Data Analysis in a Mixed Model Framework |
fdANOVA | Analysis of Variance for Univariate and Multivariate Functional Data |
fdapace | Functional Data Analysis and Empirical Dynamics |
fdaPDE | Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations |
fdasrvf | Elastic Functional Data Analysis |
fdatest | Interval Testing Procedure for Functional Data |
FDboost | Boosting Functional Regression Models |
fdcov | Analysis of Covariance Operators |
FDGcopulas | Multivariate Dependence with FDG Copulas |
fDMA | Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes |
fdq | Forest Data Quality |
fdrci | Permutation-Based FDR Point and Confidence Interval Estimation |
fdrDiscreteNull | False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions |
FDRreg | False discovery rate regression |
FDRsampsize | Compute Sample Size that Meets Requirements for Average Power and FDR |
FDRSeg | FDR-Control in Multiscale Change-Point Segmentation |
fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |
fds | Functional Data Sets |
fdth | Frequency Distribution Tables, Histograms and Polygons |
FeaLect | Scores Features for Feature Selection |
feather | R Bindings to the Feather 'API' |
feature | Local Inferential Feature Significance for Multivariate Kernel Density Estimation |
featurefinder | Feature Finder |
FeatureHashing | Creates a Model Matrix via Feature Hashing with a Formula Interface |
features | Feature Extraction for Discretely-Sampled Functional Data |
featurizer | Some Helper Functions that Help Create Features from Data |
febr | Free Brazilian Repository for Open Soil Data |
fechner | Fechnerian Scaling of Discrete Object Sets |
FedData | Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources |
federalregister | Client Package for the U.S. Federal Register API |
fedregs | Text Analysis of the US Code of Federal Regulations |
fedreporter | Interface to Federal 'RePORTER' API |
FeedbackTS | Analysis of Feedback in Time Series |
feedeR | Read RSS/Atom Feeds from R |
fence | Using Fence Methods for Model Selection |
FENmlm | Fixed Effects Nonlinear Maximum Likelihood Models |
fergm | Estimation and Fit Assessment of Frailty Exponential Random Graph Models |
fermicatsR | Fermi Large Area Telescope Catalogs |
fetchR | Calculate Wind Fetch |
fExoticOptions | Rmetrics - Pricing and Evaluating Exotic Option |
fExpressCertificates | Structured Products Valuation for ExpressCertificates/Autocallables |
fExtremes | Rmetrics - Modelling Extreme Events in Finance |
ff | Memory-Efficient Storage of Large Data on Disk and Fast Access Functions |
ffbase | Basic Statistical Functions for Package 'ff' |
FFD | Freedom from Disease |
FField | Force field simulation for a set of points |
ffmanova | Fifty-Fifty MANOVA |
ffmetadata | Access to Fragile Families Metadata |
ffstream | Forgetting Factor Methods for Change Detection in Streaming Data |
FFTrees | Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees |
fftw | Fast FFT and DCT Based on the FFTW Library |
fftwtools | Wrapper for 'FFTW3' Includes: One-Dimensional Univariate, One-Dimensional Multivariate, and Two-Dimensional Transform |
fgac | Generalized Archimedean Copula |
FGalgorithm | Flury and Gautschi algorithms |
fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
Fgmutils | Forest Growth Model Utilities |
fgof | Fast Goodness-of-fit Test |
fgpt | Floating Grid Permutation Technique |
FGSG | Feature Grouping and Selection Over an Undirected Graph |
fgui | Function GUI |
FHDI | Fractional Hot Deck and Fully Efficient Fractional Imputation |
FHtest | Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class |
FI | Provide functions for forest inventory calculations |
FIACH | Retrospective Noise Control for fMRI |
fiberLD | Fiber Length Determination |
fICA | Classical, Reloaded and Adaptive FastICA Algorithms |
fieldRS | Remote Sensing Field Work Tools |
fields | Tools for Spatial Data |
FieldSim | Random Fields (and Bridges) Simulations |
fiery | A Lightweight and Flexible Web Framework |
filehash | Simple Key-Value Database |
filehashSQLite | Simple key-value database using SQLite |
filelock | Portable File Locking |
filematrix | File-Backed Matrix Class with Convenient Read and Write Access |
filenamer | Easy Management of File Names |
fileplyr | Chunk Processing or Split-Apply-Combine on Delimited Files and Distributed Dataframes |
files | Effective File Navigation from the R Console |
filesstrings | Handy File and String Manipulation |
FILEST | Fine-Level Structure Simulator |
filling | Matrix Completion, Imputation, and Inpainting Methods |
fImport | Rmetrics - Importing Economic and Financial Data |
finalfit | Quickly Create Elegant Regression Results Tables and Plots when Modelling |
FinAna | Financial Analysis and Regression Diagnostic Analysis |
FinancialInstrument | Financial Instrument Model Infrastructure and Meta-Data |
FinancialMath | Financial Mathematics for Actuaries |
FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |
FinCal | Time Value of Money, Time Series Analysis and Computational Finance |
finch | Parse Darwin Core Files |
FinCovRegularization | Covariance Matrix Estimation and Regularization for Finance |
FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |
FindIt | Finding Heterogeneous Treatment Effects |
findpython | Functions to Find an Acceptable Python Binary |
findR | Find Code Snippets, R Scripts, R Markdown, PDF and Text Files with Pattern Matching |
findviews | A View Generator for Multidimensional Data |
FinePop | Fine-Scale Population Analysis |
fingerprint | Functions to Operate on Binary Fingerprint Data |
fingerPro | Sediment Source Fingerprinting |
fingertipscharts | Produce Charts that you See on the Fingertips Website |
fingertipsR | Fingertips Data for Public Health |
finiteruinprob | Computation of the Probability of Ruin Within a Finite Time Horizon |
finreportr | Financial Data from U.S. Securities and Exchange Commission |
FiRE | Finder of Rare Entities (FiRE) |
firebehavioR | Prediction of Wildland Fire Behavior and Hazard |
fishdata | A Small Collection of Fish Population Datasets |
FisherEM | The FisherEM Algorithm to Simultaneously Cluster and Visualize High-Dimensional Data |
fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |
FisHiCal | Iterative FISH-based Calibration of Hi-C Data |
fishkirkko2015 | Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland |
fishmethods | Fishery Science Methods and Models |
fishMod | Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models |
fishmove | Prediction of Fish Movement Parameters |
FishResp | Analytical Tool for Aquatic Respirometry |
fishtree | Interface to the Fish Tree of Life API |
FIT | Transcriptomic Dynamics Models in Field Conditions |
fit.models | Compare Fitted Models |
fit4NM | NONMEM platform |
FitAR | Subset AR Model Fitting |
FitARMA | Fit ARMA or ARIMA Using Fast MLE Algorithm |
fitbitScraper | Scrapes Data from Fitbit |
fitdc | Garmin FIT File Decoder |
fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |
fitDRC | Fitting Density Ratio Classes |
fitODBOD | Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD |
fitplc | Fit Hydraulic Vulnerability Curves |
fitPoly | Genotype Calling for Bi-Allelic Marker Assays |
FITSio | FITS (Flexible Image Transport System) Utilities |
fitteR | Fit Hundreds of Theoretical Distributions to Empirical Data |
fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |
fitur | Fit Univariate Distributions |
fivethirtyeight | Data and Code Behind the Stories and Interactives at 'FiveThirtyEight' |
FixedPoint | Algorithms for Finding Fixed Point Vectors of Functions |
fixedTimeEvents | The Distribution of Distances Between Discrete Events in Fixed Time |
fixerapi | An R Client for the "Fixer.io" Currency API |
FixSeqMTP | Fixed Sequence Multiple Testing Procedures |
fizzbuzzR | Fizz Buzz Implementation |
FKF | Fast Kalman Filter |
flacco | Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems |
flam | Fits Piecewise Constant Models with Data-Adaptive Knots |
FLAME | A Fast Large-Scale Almost Matching Exactly Approach to Causal Inference |
flare | Family of Lasso Regression |
flars | Functional LARS |
flashClust | Implementation of optimal hierarchical clustering |
flatr | Transforms Contingency Tables to Data Frames, and Analyses Them |
flatxml | Tools for Working with XML Files as R Dataframes |
flexclust | Flexible Cluster Algorithms |
flexCWM | Flexible Cluster-Weighted Modeling |
flexdashboard | R Markdown Format for Flexible Dashboards |
FlexDir | Tools to Work with the Flexible Dirichlet Distribution |
FlexGAM | Generalized Additive Models with Flexible Response Functions |
flexmet | Flexible Latent Trait Metrics using the Filtered Monotonic Polynomial Item Response Model |
flexmix | Flexible Mixture Modeling |
FlexParamCurve | Tools to Fit Flexible Parametric Curves |
flexPM | Flexible Parametric Models for Censored and Truncated Data |
flexrsurv | Flexible Relative Survival Analysis |
FlexScan | Flexible Scan Statistics |
flexsurv | Flexible Parametric Survival and Multi-State Models |
flexsurvcure | Flexible Parametric Cure Models |
flextable | Functions for Tabular Reporting |
FlickrAPI | Access to Flickr API |
flifo | Don't Get Stuck with Stacks in R |
FLightR | A Package for Reconstructing Animal Paths from Solar Geolocation Loggers |
flip | Multivariate Permutation Tests |
flippant | Dithionite Scramblase Assay Analysis |
flipscores | Robust Testing in GLMs |
FLLat | Fused Lasso Latent Feature Model |
float | 32-Bit Floats |
flobr | Convert Files to and from Binary Objects (BLOBs) |
flock | Process Synchronization Using File Locks |
flood | Statistical Methods for the (Regional) Analysis of Flood Frequency |
FloodMapper | Cross-Scale Flooding Prediction under Heavy Precipitation |
flora | Tools for Interacting with the Brazilian Flora 2020 |
flowDiv | Cytometric Diversity Indices from Gated Data |
flower | Tools for characterizing flowering traits |
flowfield | Forecasts future values of a univariate time series |
flowr | Streamlining Design and Deployment of Complex Workflows |
FlowRegEnvCost | The Environmental Costs of Flow Regulation |
flows | Flow Selection and Analysis |
FlowScreen | Daily Streamflow Trend and Change Point Screening |
FLR | Fuzzy Logic Rule Classifier |
flsa | Path algorithm for the general Fused Lasso Signal Approximator |
FLSSS | Mining Rigs for Specialized Subset Sum, Multi-Subset Sum, Multidimensional Subset Sum, Multidimensional Knapsack, Generalized Assignment Problems |
fluoSurv | Estimate Insect Survival from Fluorescence Data |
Flury | Data Sets from Flury, 1997 |
fluspect | Fluspect-B |
flux | Flux rate calculation from dynamic closed chamber measurements |
fluxweb | Estimate Energy Fluxes in Food Webs |
fma | Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998) |
FMAdist | Frequentist Model Averaging Distribution |
fmbasics | Financial Market Building Blocks |
FMC | Factorial Experiments with Minimum Level Changes |
fmdates | Financial Market Date Calculations |
FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis |
fmlogcondens | Fast Multivariate Log-Concave Density Estimation |
FMP | Filtered Monotonic Polynomial IRT Models |
fmri | Analysis of fMRI Experiments |
fmriqa | Functional MRI Quality Assurance Routines |
fmrs | Variable Selection in Finite Mixture of AFT Regression and FMR |
fmsb | Functions for Medical Statistics Book with some Demographic Data |
FMsmsnReg | Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors |
FMStable | Finite Moment Stable Distributions |
fMultivar | Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions |
FNN | Fast Nearest Neighbor Search Algorithms and Applications |
fNonlinear | Rmetrics - Nonlinear and Chaotic Time Series Modelling |
foba | greedy variable selection |
focusedMDS | Focused, Interactive Multidimensional Scaling |
foghorn | Summarize CRAN Check Results in the Terminal |
fontBitstreamVera | Fonts with 'Bitstream Vera Fonts' License |
fontcm | Computer Modern font for use with extrafont package |
fontHind | Additional 'ggplot2' Themes Using 'Hind' Fonts |
fontLiberation | Liberation Fonts |
fontMPlus | Additional 'ggplot2' Themes Using 'M+' Fonts |
fontquiver | Set of Installed Fonts |
foodweb | visualisation and analysis of food web networks |
foolbox | Function Manipulation Toolbox |
fOptions | Rmetrics - Pricing and Evaluating Basic Options |
forams | Foraminifera and Community Ecology Analyses |
forcats | Tools for Working with Categorical Variables (Factors) |
foreach | Provides Foreach Looping Construct for R |
ForeCA | Forecastable Component Analysis |
forecast | Forecasting Functions for Time Series and Linear Models |
ForecastComb | Forecast Combination Methods |
ForecastCombinations | Forecast Combinations |
forecastHybrid | Convenient Functions for Ensemble Time Series Forecasts |
forecastSNSTS | Forecasting for Stationary and Non-Stationary Time Series |
forecTheta | Forecasting Time Series by Theta Models |
foreign | Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ... |
forensic | Statistical Methods in Forensic Genetics |
forensim | Statistical tools for the interpretation of forensic DNA mixtures |
foreSIGHT | Systems Insights from Generation of Hydroclimatic Timeseries |
forestChange | Computing Essential Biodiversity Variables from Global Forest Change Data |
forestControl | Approximate False Positive Rate Control in Selection Frequency for Random Forest |
forestFloor | Visualizes Random Forests with Feature Contributions |
ForestGapR | Tropical Forest Gaps Analysis |
forestHES | Forest Health Evaluation System at the Forest Stand Level in China |
forestinventory | Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories |
forestmangr | Functions for Forest Mensuration and Management |
forestmodel | Forest Plots from Regression Models |
forestplot | Advanced Forest Plot Using 'grid' Graphics |
forestr | Ecosystem and Canopy Structural Complexity Metrics from LiDAR |
forestSAS | Forest Spatial Structure Analysis Systems |
ForestTools | Analyzing Remotely Sensed Forest Data |
forge | Casting Values into Shape |
ForImp | Imputation of Missing Values Through a Forward Imputation Algorithm |
ForIT | Functions from the 2nd Italian Forest Inventory (INFC) |
FormalSeries | Elementary arithemtic in formal series rings |
formatR | Format R Code Automatically |
formattable | Create 'Formattable' Data Structures |
Formula | Extended Model Formulas |
formula.tools | Programmatic Utilities for Manipulating Formulas, Expressions, Calls, Assignments and Other R Objects |
formulize | Add Formula Interfaces to Modelling Functions |
fortunes | R Fortunes |
forward | Robust Analysis using Forward Search |
forwards | Data from Surveys Conducted by Forwards |
ForwardSearch | Forward Search using asymptotic theory |
fossil | Palaeoecological and Palaeogeographical Analysis Tools |
FossilSim | Simulation of Fossil and Taxonomy Data |
foto | Fourier Transform Textural Ordination |
FourgameteP | FourGamete Test |
fourierin | Computes Numeric Fourier Integrals |
fourPNO | Bayesian 4 Parameter Item Response Model |
FourScores | A Game for Human vs. Human or Human vs. AI |
fpa | Spatio-Temporal Fixation Pattern Analysis |
fpc | Flexible Procedures for Clustering |
fpca | Restricted MLE for Functional Principal Components Analysis |
FPCA2D | Two Dimensional Functional Principal Component Analysis |
FPCA3D | Three Dimensional Functional Component Analysis |
fpCompare | Reliable Comparison of Floating Point Numbers |
FPDclustering | PD-Clustering and Factor PD-Clustering |
fpeek | Check Text Files Content at a Glance |
fpest | Estimating Finite Population Total |
fpmoutliers | Frequent Pattern Mining Outliers |
fPortfolio | Rmetrics - Portfolio Selection and Optimization |
fpow | Computing the noncentrality parameter of the noncentral F distribution |
fpp | Data for "Forecasting: principles and practice" |
fpp2 | Data for "Forecasting: Principles and Practice" (2nd Edition) |
fptdApprox | Approximation of First-Passage-Time Densities for Diffusion Processes |
FPV | Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment |
fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |
fracprolif | Fraction Proliferation via a Quiescent Growth Model |
fractal | A Fractal Time Series Modeling and Analysis Package |
fractaldim | Estimation of fractal dimensions |
FractalParameterEstimation | Simulation and Parameter Estimation of Randomized Sierpinski Carpets using the p-p-p-q-Model |
fractalrock | Generate fractal time series with non-normal returns distribution |
FRACTION | Numeric number into fraction |
fractional | Vulgar Fractions in R |
fragilityindex | Fragility Index |
Fragman | Fragment Analysis in R |
frailtyEM | Fitting Frailty Models with the EM Algorithm |
frailtyHL | Frailty Models via Hierarchical Likelihood |
frailtypack | General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction; Evaluation of Failure-Time Surrogate Endpoints |
frailtySurv | General Semiparametric Shared Frailty Model |
frair | Tools for Functional Response Analysis |
frambgrowth | Simulation of the Growth of Framboidal and Sunflower Pyrite |
Frames2 | Estimation in Dual Frame Surveys |
franc | Detect the Language of Text |
FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |
frapplot | Automatic Data Processing and Visualization for FRAP |
frbs | Fuzzy Rule-Based Systems for Classification and Regression Tasks |
FRCC | Fast Regularized Canonical Correlation Analysis |
fredr | An R Client for the 'FRED' API |
freegroup | The Free Group |
freeknotsplines | Algorithms for Implementing Free-Knot Splines |
FreeSortR | Free Sorting Data Analysis |
freestats | Statistical algorithms used in common data mining course |
freesurfer | Wrapper Functions for 'Freesurfer' |
freetypeharfbuzz | Deterministic Computation of Text Box Metrics |
fRegression | Rmetrics - Regression Based Decision and Prediction |
FRegSigCom | Functional Regression using Signal Compression Approach |
FREQ | FREQ: Estimate population size from capture frequencies |
freqdist | Frequency Distribution |
freqdom | Frequency Domain Based Analysis: Dynamic PCA |
freqdom.fda | Functional Time Series: Dynamic Functional Principal Components |
freqparcoord | Novel Methods for Parallel Coordinates |
FreqProf | Frequency Profiles Computing and Plotting |
frequency | Easy Frequency Tables |
frequencyConnectedness | Spectral Decomposition of Connectedness Measures |
FRESA.CAD | Feature Selection Algorithms for Computer Aided Diagnosis |
FrF2 | Fractional Factorial Designs with 2-Level Factors |
FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |
FRK | Fixed Rank Kriging |
fRLR | Fit Repeated Linear Regressions |
frm | Regression Analysis of Fractional Responses |
frmhet | Regression Analysis of Fractional Responses Under Unobserved Heterogeneity |
frmpd | Regression Analysis of Panel Fractional Responses |
frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |
fromo | Fast Robust Moments |
frontier | Stochastic Frontier Analysis |
frontiles | Partial Frontier Efficiency Analysis |
frt | Full Randomization Test |
fs | Cross-Platform File System Operations Based on 'libuv' |
FSA | Simple Fisheries Stock Assessment Methods |
FSAdata | Data to Support Fish Stock Assessment ('FSA') Package |
fscaret | Automated Feature Selection from 'caret' |
fsdaR | Robust Data Analysis Through Monitoring and Dynamic Visualization |
FSelector | Selecting Attributes |
FSelectorRcpp | 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support |
fsia | Import and Analysis of OMR Data from FormScanner |
FSInteract | Fast Searches for Interactions |
fslr | Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB') |
FSMUMI | Imputation of Time Series Based on Fuzzy Logic |
fso | Fuzzy Set Ordination |
fSRM | Social Relations Analyses with Roles ("Family SRM") |
fst | Lightning Fast Serialization of Data Frames for R |
Fstability | Calculate Feature Stability |
fsthet | Fst-Heterozygosity Smoothed Quantiles |
FSTpackage | Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotation Scores |
ftDK | A Wrapper for the API of the Danish Parliament |
FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |
ftnonpar | Features and Strings for Nonparametric Regression |
fTrading | Rmetrics - Trading and Rebalancing Financial Instruments |
FTRLProximal | FTRL Proximal Implementation for Elastic Net Regression |
fts | R Interface to 'tslib' (a Time Series Library in C++) |
ftsa | Functional Time Series Analysis |
ftsspec | Spectral Density Estimation and Comparison for Functional Time Series |
fueleconomy | EPA fuel economy data |
fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic |
fugue | Sensitivity Analysis Optimized for Matched Sets of Varied Sizes |
fullfact | Full Factorial Breeding Analysis |
fulltext | Full Text of 'Scholarly' Articles Across Many Data Sources |
fun | Use R for Fun |
funbarRF | Fungal Species Identification using DNA Barcode with Random Forest |
funchir | Convenience Functions by Michael Chirico |
FunChisq | Chi-Square and Exact Tests for Model-Free Functional Dependency |
FunCluster | Functional Profiling of Microarray Expression Data |
FuncMap | Hive Plots of R Package Function Calls |
functional | Curry, Compose, and other higher-order functions |
FunctionalNetworks | An algorithm for gene and gene set network inference |
functools | Functional Programming in R |
funData | An S4 Class for Functional Data |
funFEM | Clustering in the Discriminative Functional Subspace |
fungible | Psychometric Functions from the Waller Lab |
funHDDC | Univariate and Multivariate Model-Based Clustering in Group-Specific Functional Subspaces |
funique | A Faster Unique Function |
fUnitRoots | Rmetrics - Modelling Trends and Unit Roots |
funLBM | Model-Based Co-Clustering of Functional Data |
funModeling | Exploratory Data Analysis and Data Preparation Tool-Box Book |
funnelR | Funnel Plots for Proportion Data |
funr | Simple Utility Providing Terminal Access to all R Functions |
funrar | Functional Rarity Indices Computation |
funreg | Functional Regression for Irregularly Timed Data |
FUNTA | Functional Tangential Angle Pseudo-Depth |
funtimes | Functions for Time Series Analysis |
furniture | Furniture for Quantitative Scientists |
furrr | Apply Mapping Functions in Parallel using Futures |
fuser | Fused Lasso for High-Dimensional Regression over Groups |
fusionclust | Clustering and Feature Screening using L1 Fusion Penalty |
FusionLearn | Fusion Learning |
futile.any | A Tiny Utility Providing Polymorphic Operations |
futile.logger | A Logging Utility for R |
futile.matrix | Random Matrix Generation and Manipulation |
futile.options | Futile Options Management |
futile.paradigm | A framework for working in a functional programming paradigm in R |
futility | Interim Analysis of Operational Futility in Randomized Trials with Time-to-Event Endpoints and Fixed Follow-Up |
future | Unified Parallel and Distributed Processing in R for Everyone |
future.apply | Apply Function to Elements in Parallel using Futures |
future.BatchJobs | A Future API for Parallel and Distributed Processing using BatchJobs |
future.batchtools | A Future API for Parallel and Distributed Processing using 'batchtools' |
future.callr | A Future API for Parallel Processing using 'callr' |
futureheatwaves | Find, Characterize, and Explore Extreme Events in Climate Projections |
fuzzr | Fuzz-Test R Functions |
Fuzzy.p.value | Computing Fuzzy p-Value |
FuzzyAHP | (Fuzzy) AHP Calculation |
fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |
fuzzyforest | Fuzzy Forests |
fuzzyjoin | Join Tables Together on Inexact Matching |
FuzzyLP | Fuzzy Linear Programming |
FuzzyMCDM | Multi-Criteria Decision Making Methods for Fuzzy Data |
FuzzyNumbers | Tools to Deal with Fuzzy Numbers |
FuzzyNumbers.Ext.2 | Apply Two Fuzzy Numbers on a Monotone Function |
FuzzyR | Fuzzy Logic Toolkit for R |
fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |
fuzzyreg | Fuzzy Linear Regression |
fuzzySim | Fuzzy Similarity in Species Distributions |
FuzzyStatProb | Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain |
FuzzyStatTra | Statistical Methods for Trapezoidal Fuzzy Numbers |
FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |
fuzzywuzzyR | Fuzzy String Matching |
fwdmsa | Forward search for Mokken scale analysis |
FWDselect | Selecting Variables in Regression Models |
fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |
fwsim | Fisher-Wright Population Simulation |
fxregime | Exchange Rate Regime Analysis |
fxtract | Feature Extraction from Grouped Data |
g.data | Delayed-Data Packages |
G1DBN | A package performing Dynamic Bayesian Network inference |
g2f | Find and Fill Gaps in Metabolic Networks |
G2Sd | Grain-Size Statistics and Description of Sediment |
g3viz | Visualize Genomic Mutation Data Using an Interactive Lollipop Diagram |
GA | Genetic Algorithms |
GAabbreviate | Abbreviating Items Measures using Genetic Algorithms |
GABi | Framework for Generalized Subspace Pattern Mining |
GAD | GAD: Analysis of variance from general principles |
GADAG | A Genetic Algorithm for Learning Directed Acyclic Graphs |
GaDiFPT | First Passage Time Simulation for Gaussian Diffusion Processes |
GADMTools | Easy Use of 'GADM' Shapefiles |
gafit | Genetic Algorithm for Curve Fitting |
gaiah | Genetic and Isotopic Assignment Accounting for Habitat Suitability |
gains | Lift (Gains) Tables and Charts |
GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |
galgo | Genetic Algorithms for Multivariate Statistical Models from Large-Scale Functional Genomics Data |
galts | Genetic Algorithms and C-Steps Based LTS (Least Trimmed Squares) Estimation |
gam | Generalized Additive Models |
gamair | Data for "GAMs: An Introduction with R" |
gambin | Fit the Gambin Model to Species Abundance Distributions |
GAMBoost | Generalized linear and additive models by likelihood based boosting |
gamboostLSS | Boosting Methods for 'GAMLSS' |
gamboostMSM | Estimating multistate models using gamboost() |
gamclass | Functions and Data for a Course on Modern Regression and Classification |
gamCopula | Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas |
GAMens | Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification |
gameofthrones | Palettes Inspired in the TV Show "Game of Thrones" |
games | Statistical Estimation of Game-Theoretic Models |
gamesGA | Genetic Algorithm for Sequential Symmetric Games |
GameTheory | Cooperative Game Theory |
GameTheoryAllocation | Tools for Calculating Allocations in Game Theory |
gamlr | Gamma Lasso Regression |
gamlss | Generalised Additive Models for Location Scale and Shape |
gamlss.add | Extra Additive Terms for GAMLSS Models |
gamlss.cens | Fitting an Interval Response Variable Using ‘gamlss.family’ Distributions |
gamlss.countKinf | Generating and Fitting K-Inflated 'discrete gamlss.family' Distributions |
gamlss.data | GAMLSS Data |
gamlss.demo | Demos for GAMLSS |
gamlss.dist | Distributions for Generalized Additive Models for Location Scale and Shape |
gamlss.mx | Fitting Mixture Distributions with GAMLSS |
gamlss.nl | Fitting non linear parametric GAMLSS models |
gamlss.spatial | Spatial Terms in Generalized Additive Models for Location Scale and Shape Models |
gamlss.tr | Generating and Fitting Truncated ‘gamlss.family’ Distributions |
gamlss.util | GAMLSS Utilities |
gamlssbssn | Bimodal Skew Symmetric Normal Distribution |
gamm4 | Generalized Additive Mixed Models using 'mgcv' and 'lme4' |
gamm4.test | Comparing Nonlinear Curves and Surface Estimations by Semiparametric Methods |
gammSlice | Generalized Additive Mixed Model Analysis via Slice Sampling |
gamreg | Robust and Sparse Regression via Gamma-Divergence |
gamRR | Calculate the RR for the GAM |
gamsel | Fit Regularization Path for Generalized Additive Models |
ganalytics | Interact with 'Google Analytics' |
GANPA | Gene Association Network-based Pathway Analysis |
GANPAdata | The GANPA Datasets Package |
gap | Genetic Analysis Package |
gap.datasets | Datasets for 'gap' |
GAparsimony | Searching Parsimony Models with Genetic Algorithms |
gapfill | Fill Missing Values in Satellite Data |
gapmap | Functions for Drawing Gapped Cluster Heatmap with ggplot2 |
gapminder | Data from Gapminder |
GAR | Authorize and Request Google Analytics Data |
garray | Generalized Array Arithmetic for Ragged Arrays with Named Margins |
GAS | Generalized Autoregressive Score Models |
gaselect | Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data |
gasfluxes | Greenhouse Gas Flux Calculation from Chamber Measurements |
gastempt | Analyzing Gastric Emptying from MRI or Scintigraphy |
gaston | Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models |
gatepoints | Easily Gate or Select Points on a Scatter Plot |
GauPro | Gaussian Process Fitting |
gaussDiff | Difference measures for multivariate Gaussian probability density functions |
gaussfacts | The Greatest Mathematician Since Antiquity |
gaussquad | Collection of functions for Gaussian quadrature |
gazepath | Parse Eye-Tracking Data into Fixations |
gb | Generalize Lambda Distribution and Generalized Bootstrapping |
GB2 | Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation |
GB2group | Estimation of the Generalised Beta Distribution of the Second Kind from Grouped Data |
gbfs | Interface with General Bikeshare Feed Specification Files |
GBJ | Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies |
gbm | Generalized Boosted Regression Models |
gbm2sas | Convert GBM Object Trees to SAS Code |
gbp | A Bin Packing Problem Solver |
gbRd | Utilities for processing Rd objects and files |
gbs2ploidy | Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data |
gbts | Hyperparameter Search for Gradient Boosted Trees |
gbutils | Simulation of Real and Complex Numbers and Small Programming Utilities |
GCAI.bias | Guided Correction Approach for Inherited bias (GCAI.bias) |
GCalignR | Simple Peak Alignment for Gas-Chromatography Data |
gCat | Graph-based two-sample tests for categorical data |
gcbd | 'GPU'/CPU Benchmarking in Debian-Based Systems |
GCD | Global Charcoal Database |
gcdnet | LASSO and Elastic Net (Adaptive) Penalized Least Squares, Logistic Regression, HHSVM, Squared Hinge SVM and Expectile Regression using a Fast GCD Algorithm |
gcerisk | Generalized Competing Event Model |
gcForest | Deep Forest Model |
gcite | Google Citation Parser |
gcKrig | Analysis of Geostatistical Count Data using Gaussian Copulas |
gclus | Clustering Graphics |
gcmr | Gaussian Copula Marginal Regression |
gconcord | Concord method for Graphical Model Selection |
gcookbook | Data for "R Graphics Cookbook" |
GCPM | Generalized Credit Portfolio Model |
GD | Geographical Detectors |
GDAdata | Datasets for the Book Graphical Data Analysis with R |
gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |
gdata | Various R Programming Tools for Data Manipulation |
GDAtools | A Toolbox for the Analysis of Categorical Data in Social Sciences, and Especially Geometric Data Analysis |
gDefrag | Graph-Based Landscape De-Fragmentation |
GDELTtools | Download, slice, and normalize GDELT data |
gdimap | Generalized Diffusion Magnetic Resonance Imaging |
GDINA | The Generalized DINA Model Framework |
gdistance | Distances and Routes on Geographical Grids |
gdm | Generalized Dissimilarity Modeling |
gdmp | Genomic Data Management |
gdns | Tools to Work with Google's 'DNS-over-HTTPS' ('DoH') 'API' |
gdpc | Generalized Dynamic Principal Components |
gds | Descriptive Statistics of Grouped Data |
gdtools | Utilities for Graphical Rendering |
gear | Geostatistical Analysis in R |
GeDS | Geometrically Designed Spline Regression |
gee | Generalized Estimation Equation Solver |
gee4 | Generalised Estimating Equations (GEE/WGEE) using 'Armadillo' and S4 |
GEEaSPU | Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE) |
geecure | Marginal Proportional Hazards Mixture Cure Models with Generalized Estimating Equations |
geeM | Solve Generalized Estimating Equations |
GEEmediate | Mediation Analysis for Generalized Linear Models Using the Difference Method |
geepack | Generalized Estimating Equation Package |
geesmv | Modified Variance Estimators for Generalized Estimating Equations |
geex | An API for M-Estimation |
geigen | Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack |
geiger | Analysis of Evolutionary Diversification |
GEint | Misspecified Models for Gene-Environment Interaction |
gelnet | Generalized Elastic Nets |
gem | File Conversion for 'Gem Infrasound Logger' |
gemlog | File Conversion for 'Gem Infrasound Logger' |
gems | Generalized Multistate Simulation Model |
gemtc | Network Meta-Analysis Using Bayesian Methods |
genalg | R Based Genetic Algorithm |
GenAlgo | Classes and Methods to Use Genetic Algorithms for Feature Selection |
genasis | Global ENvironmental ASsessment Information System (GENASIS) computational tools |
genBaRcode | Analysis and Visualization Tools for Genetic Barcode Data |
genBart | Generate 'BART' File |
GenBinomApps | Clopper-Pearson Confidence Interval and Generalized Binomial Distribution |
gencve | General Cross Validation Engine |
gendata | Generate and Modify Synthetic Datasets |
gender | Predict Gender from Names Using Historical Data |
genderBR | Predict Gender from Brazilian First Names |
genderizeR | Gender Prediction Based on First Names |
gendist | Generated Probability Distribution Models |
GENEAclassify | Segmentation and Classification of Accelerometer Data |
GENEAread | Package for Reading Binary Files |
GENEAsphere | Visualisation of Raw or Segmented Accelerometer Data |
GeneClusterNet | Gene Expression Clustering and Gene Network |
GeneCycle | Identification of Periodically Expressed Genes |
GeneF | Package for Generalized F-statistics |
geneListPie | Profiling a gene list into GOslim or KEGG function pie |
genemodel | Gene Model Plotting in R |
GeneNet | Modeling and Inferring Gene Networks |
geneNetBP | Belief Propagation in Genotype-Phenotype Networks |
genepi | Genetic Epidemiology Design and Inference |
genepop | Population Genetic Data Analysis Using Genepop |
generalCorr | Generalized Correlations and Initial Causal Path |
generalhoslem | Goodness of Fit Tests for Logistic Regression Models |
GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |
GeneralizedUmatrix | Credible Visualization for Two-Dimensional Projections of Data |
GeneralOaxaca | Blinder-Oaxaca Decomposition for Generalized Linear Model |
generator | Generate Data Containing Fake Personally Identifiable Information |
generics | Common S3 Generics not Provided by Base R Methods Related to Model Fitting |
geneSignatureFinder | A Gene-signatures finder tools |
GenEst | Generalized Mortality Estimator |
genesysr | Genesys PGR Client |
genetics | Population Genetics |
GeneticSubsetter | Identify Favorable Subsets of Germplasm Collections |
GeNetIt | Spatial Graph-Theoretic Genetic Gravity Modelling |
GenForImp | The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data |
genie | A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm |
geniusr | Tools for Working with the 'Genius' API |
GenKern | Functions for generating and manipulating binned kernel density estimates |
GENLIB | Genealogical Data Analysis |
genlogis | Generalized Logistic Distribution |
GENMETA | Implements Generalized Meta-Analysis Using Iterated Reweighted Least Squares Algorithm |
genMOSS | Functions for the Bayesian Analysis of GWAS Data |
genMOSSplus | Application of MOSS algorithm to genome-wide association study (GWAS) |
geno2proteo | Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci |
genogeographer | Methods for Analysing Forensic Ancestry Informative Markers |
genomeplot | 'Plot genome wide values for all chromosomes' |
genomic.autocorr | Models Dealing with Spatial Dependency in Genomic Data |
GenomicMating | Efficient Breeding by Genomic Mating |
genomicper | Circular Genomic Permutation using Gwas p-Values of Association |
GenomicTools | Collection of Tools for Genomic Data Analysis |
GenomicTools.fileHandler | File Handlers for Genomic Data Analysis |
genoPlotR | Plot Publication-Grade Gene and Genome Maps |
GenOrd | Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions |
GenoScan | A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis |
genotypeR | SNP Genotype Marker Design and Analysis |
genpathmox | Generalized Pathmox Approach Segmentation Tree Analysis |
genridge | Generalized Ridge Trace Plots for Ridge Regression |
GenSA | Generalized Simulated Annealing |
gensemble | Generalized Ensemble Methods |
gensphere | Generalized Spherical Distributions |
genSurv | Generating Multi-State Survival Data |
gensvm | A Generalized Multiclass Support Vector Machine |
GenWin | Spline Based Window Boundaries for Genomic Analyses |
geoaxe | Split 'Geospatial' Objects into Pieces |
geoBayes | Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods |
GeoBoxplot | Geographic Box Plot |
geoCount | Analysis and Modeling for Geostatistical Count Data |
GeoDE | A geometrical Approach to Differential expression and gene-set enrichment |
geodetector | Stratified Heterogeneity Measure, Dominant Driving Force Detection, Interaction Relationship Investigation |
geodist | Fast, Dependency-Free Geodesic Distance Calculations |
geoelectrics | 3D-Visualization of Geoelectric Resistivity Measurement Profiles |
geofacet | 'ggplot2' Faceting Utilities for Geographical Data |
geofd | Spatial Prediction for Function Value Data |
geoGAM | Select Sparse Geoadditive Models for Spatial Prediction |
GeoGenetix | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |
geogrid | Turn Geospatial Polygons into Regular or Hexagonal Grids |
geojson | Classes for 'GeoJSON' |
geojsonio | Convert Data from and to 'GeoJSON' or 'TopoJSON' |
geojsonlint | Tools for Validating 'GeoJSON' |
geojsonR | A GeoJson Processing Toolkit |
geojsonsf | GeoJSON to Simple Feature Converter |
geoknife | Web-Processing of Large Gridded Datasets |
GeoLight | Analysis of Light Based Geolocator Data |
GEOmap | Topographic and Geologic Mapping |
geomapdata | Data for topographic and Geologic Mapping |
GeomComb | (Geometric) Forecast Combination Methods |
geomedb | Fetch 'GeOMe-db' FIMS Data |
geomerge | Geospatial Data Integration |
geometa | Tools for Reading and Writing ISO/OGC Geographic Metadata |
geometry | Mesh Generation and Surface Tessellation |
geomnet | Network Visualization in the 'ggplot2' Framework |
GeoMongo | Geospatial Queries Using 'PyMongo' |
geomorph | Geometric Morphometric Analyses of 2D/3D Landmark Data |
geonames | Interface to the "Geonames" Spatial Query Web Service |
geonapi | 'GeoNetwork' API R Interface |
geoops | 'GeoJSON' Topology Calculations and Operations |
geoparser | Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text |
geophys | Geophysics, Continuum Mechanics, Gravity Modeling |
geoR | Analysis of Geostatistical Data |
GeoRange | Calculating Geographic Range from Occurrence Data |
geoRglm | A Package for Generalised Linear Spatial Models |
georob | Robust Geostatistical Analysis of Spatial Data |
geosample | Construction of Geostatistical Sampling Designs |
geosapi | GeoServer REST API R Interface |
geoscale | Geological Time Scale Plotting |
geospacom | Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps |
geoSpectral | Classes and Methods for Working with Spectral Data with Space-Time Attributes |
geosphere | Spherical Trigonometry |
geospt | Geostatistical Analysis and Design of Optimal Spatial Sampling Networks |
geosptdb | Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression |
geostatsp | Geostatistical Modelling with Likelihood and Bayes |
geotech | Geotechnical Engineering |
geotools | Geo tools |
geotoolsR | Tools to Improve the Use of Geostatistic |
geotopbricks | An R Plug-in for the Distributed Hydrological Model GEOtop |
geozoning | Zoning Methods for Spatial Data |
geozoo | Zoo of Geometric Objects |
gepaf | Google Encoded Polyline Algorithm Format |
GERGM | Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models |
germanpolls | German Polling Data |
GerminaR | Germination Indexes for Seed Germination Variables for Ecophysiological Studies |
germinationmetrics | Seed Germination Indices and Curve Fitting |
gesca | Generalized Structured Component Analysis (GSCA) |
GESE | Gene-Based Segregation Test |
gesis | R Client for GESIS Data Catalogue (DBK) |
gestalt | Tools for Making and Combining Functions |
GESTr | Gene Expression State Transformation |
getCRUCLdata | Use and Explore CRU CL v. 2.0 Climatology Elements in R |
GetDFPData | Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA System |
GetHFData | Download and Aggregate High Frequency Trading Data from Bovespa |
gethr | Access to Ethereum-Based Blockchains Through Geth Nodes |
GetITRData | Reading Financial Reports from Bovespa's ITR System |
getlandsat | Get Landsat 8 Data from Amazon Public Data Sets |
GetLattesData | Reading Bibliometric Data from Lattes Platform |
getMet | Get Meteorological Data for Hydrologic Models |
getmstatistic | Quantifying Systematic Heterogeneity in Meta-Analysis |
getopt | C-Like 'getopt' Behavior |
GetoptLong | Parsing Command-Line Arguments and Variable Interpolation |
getPass | Masked User Input |
getProxy | Get Free Proxy IP and Port |
GetR | GetR: Calculate Guttman error trees in R |
gets | General-to-Specific (GETS) Modelling and Indicator Saturation Methods |
getTBinR | Get WHO Tuberculosis Data |
GetTDData | Get Data for Brazilian Bonds (Tesouro Direto) |
gettz | Get the Timezone Information |
GEVcdn | GEV Conditional Density Estimation Network |
GEVStableGarch | ARMA-GARCH/APARCH Models with GEV and Stable Distributions |
GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data |
GFA | Group Factor Analysis |
gfcanalysis | Tools for Working with Hansen et al. Global Forest Change Dataset |
GFD | Tests for General Factorial Designs |
GFE | Gross Flows Estimation under Complex Surveys |
gfer | Green Finance and Environmental Risk |
GFGM.copula | Generalized Farlie-Gumbel-Morgenstern Copula |
gfmR | Implements Group Fused Multinomial Regression |
GFORCE | Clustering and Inference Procedures for High-Dimensional Latent Variable Models |
ggallin | Grab Bag of 'ggplot2' Functions |
ggalluvial | Alluvial Diagrams in 'ggplot2' |
GGally | Extension to 'ggplot2' |
ggalt | Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2' |
gganimate | A Grammar of Animated Graphics |
ggbeeswarm | Categorical Scatter (Violin Point) Plots |
ggbuildr | Save Incremental Builds of Plots |
ggChernoff | Chernoff Faces for 'ggplot2' |
ggconf | Simpler Appearance Modification of 'ggplot2' |
ggcorrplot | Visualization of a Correlation Matrix using 'ggplot2' |
ggdag | Analyze and Create Elegant Directed Acyclic Graphs |
ggdark | Dark Mode for 'ggplot2' Themes |
ggdendro | Create Dendrograms and Tree Diagrams Using 'ggplot2' |
ggdistribute | A 'ggplot2' Extension for Plotting Unimodal Distributions |
ggdmc | Cognitive Models |
gge | Genotype Plus Genotype-by-Environment Biplots |
GGEBiplotGUI | Interactive GGE Biplots in R |
GGEBiplots | GGE Biplots with 'ggplot2' |
ggedit | Interactive 'ggplot2' Layer and Theme Aesthetic Editor |
ggeffects | Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs |
ggenealogy | Visualization Tools for Genealogical Data |
ggetho | Visualisation of High-Throughput Behavioural (i.e. Ethomics) Data |
ggExtra | Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements |
ggfan | Summarise a Distribution Through Coloured Intervals |
ggfittext | Fit Text Inside a Box in 'ggplot2' |
ggfocus | Focus on Specific Factor Levels in your ggplot() |
ggforce | Accelerating 'ggplot2' |
ggformula | Formula Interface to the Grammar of Graphics |
ggfortify | Data Visualization Tools for Statistical Analysis Results |
gggenes | Draw Gene Arrow Maps in 'ggplot2' |
ggghost | Capture the Spirit of Your 'ggplot2' Calls |
ggguitar | Utilities for Creating Guitar Tablature |
gghalfnorm | Create a Half Normal Plot Using 'ggplot2' |
gghighlight | Highlight Lines and Points in 'ggplot2' |
ggimage | Use Image in 'ggplot2' |
gginference | Visualise the Results of Inferential Statistics using 'ggplot2' |
gginnards | Explore the Innards of 'ggplot2' Objects |
GGIR | Raw Accelerometer Data Analysis |
ggiraph | Make 'ggplot2' Graphics Interactive |
ggiraphExtra | Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' |
ggjoy | Joyplots in 'ggplot2' |
gglasso | Group Lasso Penalized Learning Using a Unified BMD Algorithm |
gglogo | Geom for Logo Sequence Plots |
ggloop | Create 'ggplot2' Plots in a Loop |
gglorenz | Plotting Lorenz Curve with the Blessing of 'ggplot2' |
ggm | Functions for graphical Markov models |
ggmap | Spatial Visualization with ggplot2 |
ggmcmc | Tools for Analyzing MCMC Simulations from Bayesian Inference |
GGMM | Mixture Gaussian Graphical Models |
ggmosaic | Mosaic Plots in the 'ggplot2' Framework |
GGMridge | Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation |
GGMselect | Gaussian Graphs Models Selection |
ggmuller | Create Muller Plots of Evolutionary Dynamics |
ggnetwork | Geometries to Plot Networks with 'ggplot2' |
ggnormalviolin | A 'ggplot2' Extension to Make Normal Violin Plots |
ggpage | Creates Page Layout Visualizations |
ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |
ggparliament | Parliament Plots |
ggperiodic | Easy Plotting of Periodic Data with 'ggplot2' |
ggplot2 | Create Elegant Data Visualisations Using the Grammar of Graphics |
ggplot2movies | Movies Data |
ggplotAssist | 'RStudio' Addin for Teaching and Learning 'ggplot2' |
ggplotgui | Create Ggplots via a Graphical User Interface |
ggplotify | Convert Plot to 'grob' or 'ggplot' Object |
ggpmisc | Miscellaneous Extensions to 'ggplot2' |
ggpol | Visualizing Social Science Data with 'ggplot2' |
ggpolypath | Polygons with Holes for the Grammar of Graphics |
ggpubr | 'ggplot2' Based Publication Ready Plots |
ggpval | Annotate Statistical Tests for 'ggplot2' |
ggQC | Quality Control Charts for 'ggplot' |
ggQQunif | Compare Big Datasets to the Uniform Distribution |
ggquickeda | Quickly Explore Your Data Using 'ggplot2' and Summary Tables |
ggquiver | Quiver Plots for 'ggplot2' |
ggRandomForests | Visually Exploring Random Forests |
ggraph | An Implementation of Grammar of Graphics for Graphs and Networks |
ggraptR | Allows Interactive Visualization of Data Through a Web Browser GUI |
ggrasp | Gaussian-Based Genome Representative Selector with Prioritization |
ggrepel | Automatically Position Non-Overlapping Text Labels with 'ggplot2' |
ggridges | Ridgeline Plots in 'ggplot2' |
ggROC | package for roc curve plot with ggplot2 |
ggsci | Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2' |
ggseas | 'stats' for Seasonal Adjustment on the Fly with 'ggplot2' |
ggseqlogo | A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos |
ggsignif | Significance Brackets for 'ggplot2' |
ggsn | North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap' |
ggsolvencyii | A 'ggplot2'-Plot of Composition of Solvency II SCR: SF and IM |
ggsom | New Data Visualisations for SOMs Cluster |
ggspatial | Spatial Data Framework for ggplot2 |
ggspectra | Extensions to 'ggplot2' for Radiation Spectra |
ggstance | Horizontal 'ggplot2' Components |
ggstatsplot | 'ggplot2' Based Plots with Statistical Details |
ggswissmaps | Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects |
ggtern | An Extension to 'ggplot2', for the Creation of Ternary Diagrams |
ggThemeAssist | Add-in to Customize 'ggplot2' Themes |
ggthemes | Extra Themes, Scales and Geoms for 'ggplot2' |
ggTimeSeries | Time Series Visualisations Using the Grammar of Graphics |
GGUM | Generalized Graded Unfolding Model |
ggversa | Graficas Versatiles Con 'ggplot2' |
ggvis | Interactive Grammar of Graphics |
ggvoronoi | Voronoi Diagrams and Heatmaps with 'ggplot2' |
ggwordcloud | A Word Cloud Geom for 'ggplot2' |
gh | 'GitHub' 'API' |
ghibli | Studio Ghibli Palette Generator |
GHQp | Gauss Hermite Quadrature with pruning |
GHS | Graphical Horseshoe MCMC Sampler Using Data Augmented Block Gibbs Sampler |
ghyp | A Package on Generalized Hyperbolic Distribution and Its Special Cases |
gibble | Geometry Decomposition |
gibbs.met | Naive Gibbs Sampling with Metropolis Steps |
GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |
Gifi | Multivariate Analysis with Optimal Scaling |
gifski | Highest Quality GIF Encoder |
gifti | Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information |
GIGrvg | Random Variate Generator for the GIG Distribution |
GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |
gim | Generalized Integration Model |
gimme | Group Iterative Multiple Model Estimation |
gimmeTools | Supplemental Tools for the 'gimme' R Package |
gimms | Download and Process GIMMS NDVI3g Data |
GiNA | High Throughput Phenotyping |
GiniWegNeg | Computing the Gini-Based Coefficients for Weighted and Negative Attributes |
gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |
giphyr | R Interface to the Giphy API |
GiRaF | Gibbs Random Fields Analysis |
GISTools | Some further GIS capabilities for R |
gistr | Work with 'GitHub' 'Gists' |
git2r | Provides Access to Git Repositories |
gitgadget | Rstudio Addin for Version Control and Assignment Management using Git |
githubinstall | A Helpful Way to Install R Packages Hosted on GitHub |
gitlabr | Access to the Gitlab API |
gitter | Quantification of Pinned Microbial Cultures |
givitiR | The GiViTI Calibration Test and Belt |
gjam | Generalized Joint Attribute Modeling |
GJRM | Generalised Joint Regression Modelling |
gk | g-and-k and g-and-h Distribution Functions |
GK2011 | Gaines and Kuklinski (2011) Estimators for Hybrid Experiments |
gkmSVM | Gapped-Kmer Support Vector Machine |
glacierSMBM | Glacier Surface Mass Balance Model |
glamlasso | Penalization in Large Scale Generalized Linear Array Models |
glarma | Generalized Linear Autoregressive Moving Average Models |
glassdoor | Interface to 'Glassdoor' API |
glasso | Graphical Lasso: Estimation of Gaussian Graphical Models |
glassoFast | Fast Graphical LASSO |
glba | General Linear Ballistic Accumulator Models |
glcm | Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs) |
gld | Estimation and Use of the Generalised (Tukey) Lambda Distribution |
GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |
GLDreg | Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data |
gldrm | Generalized Linear Density Ratio Models |
GLIDE | Global and Individual Tests for Direct Effects |
glinternet | Learning Interactions via Hierarchical Group-Lasso Regularization |
gllm | Generalised log-Linear Model |
gllvm | Generalized Linear Latent Variable Models |
glm.deploy | 'C' and 'Java' Source Code Generator for Fitted Glm Objects |
glm.predict | Predicted Values and Discrete Changes for GLM |
glm2 | Fitting Generalized Linear Models |
GLMaSPU | An Adaptive Test on High Dimensional Parameters in Generalized Linear Models |
glmbb | All Hierarchical or Graphical Models for Generalized Linear Model |
glmBfp | Bayesian Fractional Polynomials for GLMs |
glmc | Fitting Generalized Linear Models Subject to Constraints |
glmdm | R Code for Simulation of GLMDM |
glmertree | Generalized Linear Mixed Model Trees |
glmgraph | Graph-Constrained Regularization for Sparse Generalized Linear Models |
glmlep | Fit GLM with LEP-based penalized maximum likelihood |
glmm | Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation |
GLMMadaptive | Generalized Linear Mixed Models using Adaptive Gaussian Quadrature |
glmmboot | Bootstrap Resampling for Mixed Effects and Plain Models |
glmmEP | Generalized Linear Mixed Model Analysis via Expectation Propagation |
glmmfields | Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling |
glmmLasso | Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation |
glmmML | Generalized Linear Models with Clustering |
GLMMRR | Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data |
glmmsr | Fit a Generalized Linear Mixed Model |
glmmTMB | Generalized Linear Mixed Models using Template Model Builder |
glmnet | Lasso and Elastic-Net Regularized Generalized Linear Models |
glmnetcr | Fit a Penalized Constrained Continuation Ratio Model for Predicting an Ordinal Response |
glmnetUtils | Utilities for 'Glmnet' |
glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |
glmpathcr | Fit a Penalized Continuation Ratio Model for Predicting an Ordinal Response |
GLMsData | Generalized Linear Model Data Sets |
glmtlp | Truncated Lasso Regularized Generalized Linear Models |
glmulti | Model selection and multimodel inference made easy |
glmvsd | Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models |
glmx | Generalized Linear Models Extended |
globalboosttest | Testing the additional predictive value of high-dimensional data |
GlobalDeviance | Global Deviance Permutation Tests |
GlobalFit | Bi-Level Optimization of Metabolic Network Models |
globalGSA | Global Gene-Set Analysis for Association Studies |
GlobalOptions | Generate Functions to Get or Set Global Options |
globalOptTests | Objective functions for benchmarking the performance of global optimization algorithms |
globals | Identify Global Objects in R Expressions |
globe | Plot 2D and 3D Views of the Earth, Including Major Coastline |
glogis | Fitting and Testing Generalized Logistic Distributions |
glpkAPI | R Interface to C API of GLPK |
glrt | Generalized Logrank Tests for Interval-censored Failure Time Data |
gLRTH | Genome-Wide Association and Linkage Analysis under Heterogeneity |
GLSE | Graphical Least Square Estimation |
GLSME | Generalized Least Squares with Measurement Error |
glue | Interpreted String Literals |
gma | Granger Mediation Analysis |
GMAC | Genomic Mediation Analysis with Adaptive Confounding Adjustment |
gmailr | Access the Gmail RESTful API |
GmAMisc | Gianmarco Alberti Miscellaneous |
gmapsdistance | Distance and Travel Time Between Two Points from Google Maps |
gmat | Simulation of Graphically Constrained Matrices |
GMCM | Fast Estimation of Gaussian Mixture Copula Models |
gMCP | Graph Based Multiple Comparison Procedures |
gmDatabase | Accessing a Geometallurgical Database with R |
GMDH | Short Term Forecasting via GMDH-Type Neural Network Algorithms |
GMDH2 | Binary Classification via GMDH-Type Neural Network Algorithms |
Gmedian | Geometric Median, k-Median Clustering and Robust Median PCA |
gmediation | Mediation Analysis for Multiple and Multi-Stage Mediators |
gmeta | Meta-Analysis via a Unified Framework of Confidence Distribution |
gmfd | Inference and Clustering of Functional Data |
Gmisc | Descriptive Statistics, Transition Plots, and More |
gmm | Generalized Method of Moments and Generalized Empirical Likelihood |
GMMAT | Generalized Linear Mixed Model Association Tests |
GMMBoost | Likelihood-based Boosting for Generalized mixed models |
gmnl | Multinomial Logit Models with Random Parameters |
gmodels | Various R Programming Tools for Model Fitting |
gMOIP | '2D plots of linear or integer programming models' |
gmp | Multiple Precision Arithmetic |
GMSE | Generalised Management Strategy Evaluation Simulator |
GMSimpute | Generalized Mass Spectrum Missing Peaks Abundance Imputation |
gmt | Interface Between GMT Map-Making Software and R |
gmvarkit | Estimate Gaussian Mixture Vector Autoregressive Model |
gMWT | Generalized Mann-Whitney Type Tests |
GNAR | Methods for Fitting Network Time Series Models |
GNE | Computation of Generalized Nash Equilibria |
gnFit | Goodness of Fit Test for Continuous Distribution Functions |
gnlm | Generalized Nonlinear Regression Models |
gnm | Generalized Nonlinear Models |
gnmf | Generalized Non-negative Matrix Factorization Based on Renyi Divergence |
gnorm | Generalized Normal/Exponential Power Distribution |
gnumeric | Read Data from Files Readable by 'gnumeric' |
goeveg | Functions for Community Data and Ordinations |
gof | Model-diagnostics based on cumulative residuals |
gofastr | Fast DocumentTermMatrix and TermDocumentMatrix Creation |
gofCopula | Goodness-of-Fit Tests for Copulae |
GoFKernel | Testing Goodness-of-Fit with the Kernel Density Estimator |
GofKmt | Khmaladze Martingale Transformation Goodness-of-Fit Test |
gofMC | Goodness of Fit Noise Analysis Using Monte Carlo Techniques |
goft | Tests of Fit for some Probability Distributions |
goftest | Classical Goodness-of-Fit Tests for Univariate Distributions |
goftte | Goodness-of-Fit for Time-to-Event Data |
GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |
gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |
goldi | Gene Ontology Label Discernment and Identification |
gomms | GLM-Based Ordination Method |
GoodmanKruskal | Association Analysis for Categorical Variables |
goodpractice | Advice on R Package Building |
googleAnalyticsR | Google Analytics API into R |
googleAuthR | Authenticate and Create Google APIs |
googleCloudStorageR | Interface with Google Cloud Storage API |
googleComputeEngineR | R Interface with Google Compute Engine |
googledrive | An Interface to Google Drive |
googleformr | Collect Data Programmatically by POST Methods to Google Forms |
GoogleKnowledgeGraphR | Retrieve Information from 'Google Knowledge Graph' API |
googleLanguageR | Call Google's 'Natural Language' API, 'Cloud Translation' API, 'Cloud Speech' API and 'Cloud Text-to-Speech' API |
googlenlp | An Interface to Google's Cloud Natural Language API |
googlePolylines | Encoding Coordinates into 'Google' Polylines |
googlePrintr | Connect to 'Google Cloud Print' API |
googlePublicData | Working with Google's 'Public Data Explorer' DSPL Metadata Files |
googlesheets | Manage Google Spreadsheets from R |
googleVis | R Interface to Google Charts |
googleway | Accesses Google Maps APIs to Retrieve Data and Plot Maps |
GOplot | Visualization of Functional Analysis Data |
GORCure | Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data |
goric | Generalized Order-Restricted Information Criterion |
govStatJPN | functions to get public survey data in Japan |
gower | Gower's Distance |
gpairs | gpairs: The Generalized Pairs Plot |
GPareto | Gaussian Processes for Pareto Front Estimation and Optimization |
GPArotation | GPA Factor Rotation |
GPB | Generalized Poisson Binomial Distribution |
gPCA | Batch Effect Detection via Guided Principal Components Analysis |
gpclib | General Polygon Clipping Library for R |
GPCMlasso | Differential Item Functioning in Generalized Partial Credit Models |
GPCSIV | GPCSIV, Generalized Principal Component of Symbolic Interval variables |
gpDDE | General Profiling Method for Delay Differential Equation |
gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |
GPFDA | Apply Gaussian Process in Functional data analysis |
GPfit | Gaussian Processes Modeling |
gpg | GNU Privacy Guard for R |
GPGame | Solving Complex Game Problems using Gaussian Processes |
GpGp | Fast Gaussian Process Computation Using Vecchia's Approximation |
gpk | 100 Data Sets for Statistics Education |
gplm | Generalized Partial Linear Models (GPLM) |
gplots | Various R Programming Tools for Plotting Data |
GPLTR | Generalized Partially Linear Tree-Based Regression Model |
GPM | Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets |
gpmap | Analysing and plotting genotype-phenotype maps |
GPoM | Generalized Polynomial Modelling |
gppm | Gaussian Process Panel Modeling |
gpr | A Minimalistic package to apply Gaussian Process in R |
GPrank | Gaussian Process Ranking of Multiple Time Series |
GPRMortality | Gaussian Process Regression for Mortality Rates |
gProfileR | Interface to the 'g:Profiler' Toolkit |
gptk | Gaussian Processes Tool-Kit |
gpuR | GPU Functions for R Objects |
GPvam | Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling |
gqlr | 'GraphQL' Server in R |
gquad | Prediction of G Quadruplexes and Other Non-B DNA Motifs |
Grace | Graph-Constrained Estimation and Hypothesis Tests |
gradDescent | Gradient Descent for Regression Tasks |
grade | Binary Grading functions for R |
gradientPickerD3 | Interactive Color Gradient Picker Using 'htmlwidgets' and the Modified JS Script 'jquery-gradient-picker' |
gRain | Graphical Independence Networks |
gramEvol | Grammatical Evolution for R |
GrammR | Graphical Representation and Modeling of Metagenomic Reads |
GRANBase | Creating Continuously Integrated Package Repositories from Manifests |
GRANCore | Classes and Methods for 'GRANBase' |
granova | Graphical Analysis of Variance |
granovaGG | Graphical Analysis of Variance Using ggplot2 |
GRAPE | Gene-Ranking Analysis of Pathway Expression |
grapes | Make Binary Operators |
gRapfa | Acyclic Probabilistic Finite Automata |
GrapheR | A Multi-Platform GUI for Drawing Customizable Graphs in R |
grapherator | A Modular Multi-Step Graph Generator |
GraphFactor | Network Topology of Intravariable Clusters with Intervariable Links |
graphframes | Interface for 'GraphFrames' |
graphicalVAR | Graphical VAR for Experience Sampling Data |
graphicsQC | Quality Control for Graphics in R |
graphkernels | Graph Kernels |
graphon | A Collection of Graphon Estimation Methods |
GraphPCA | Graphical Tools of Histogram PCA |
graphql | A GraphQL Query Parser |
graphscan | Cluster Detection with Hypothesis Free Scan Statistic |
graphTweets | Visualise Twitter Interactions |
GrassmannOptim | Grassmann Manifold Optimization |
gratia | Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv' |
graticule | Meridional and Parallel Lines for Maps |
grattan | Australian Tax Policy Analysis |
gravity | Estimation Methods for Gravity Models |
gRbase | A Package for Graphical Modelling in R |
GRCdata | Parameter Inference and Optimal Designs for Grouped and/or Right-Censored Count Data |
grec | GRadient-Based RECognition of Spatial Patterns in Environmental Data |
GreedyEPL | Greedy Expected Posterior Loss |
GreedyExperimentalDesign | Greedy Experimental Design Construction |
GreedyExperimentalDesignJARs | GreedyExperimentalDesign JARs |
GreedySBTM | Greedy Stochastic Block Transition Models |
Greg | Regression Helper Functions |
gremlin | Mixed-Effects REML Incorporating Generalized Inverses |
gren | Adaptive Group-Regularized Logistic Elastic Net Regression |
GREP2 | GEO RNA-Seq Experiments Processing Pipeline |
greport | Graphical Reporting for Clinical Trials |
greta | Simple and Scalable Statistical Modelling in R |
grex | Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data |
greybox | Toolbox for Model Building and Forecasting |
greyzoneSurv | Fit a Grey-Zone Model with Survival Data |
grf | Generalized Random Forests (Beta) |
gridBase | Integration of base and grid graphics |
gridDebug | Debugging 'grid' Graphics |
gridExtra | Miscellaneous Functions for "Grid" Graphics |
gridGraphics | Redraw Base Graphics Using 'grid' Graphics |
gridGraphviz | Drawing Graphs with 'grid' |
gridsample | Tools for Grid-Based Survey Sampling Design |
gridsampler | A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies |
gridSVG | Export 'grid' Graphics as SVG |
GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |
gRim | Graphical Interaction Models |
grImport | Importing Vector Graphics |
grImport2 | Importing 'SVG' Graphics |
GrimR | Calculate Optical Parameters from Spindle Stage Measurements |
grnn | General regression neural network |
GROAN | Genomic Regression Workbench |
groc | Generalized Regression on Orthogonal Components |
gromovlab | Gromov-Hausdorff Type Distances for Labeled Metric Spaces |
GroupComparisons | Paired/Unpaired Parametric/Non-Parametric Group Comparisons |
groupdata2 | Creating Groups from Data |
grouped | Regression Analysis of Grouped and Coarse Data |
groupedstats | Grouped Statistical Analyses in a Tidy Way |
groupedSurv | Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function |
groupICA | Independent Component Analysis for Grouped Data |
groupRemMap | Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty |
GroupSeq | A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs |
groupsubsetselection | Group Subset Selection |
GroupTest | Multiple Testing Procedure for Grouped Hypotheses |
grove | Wavelet Functional ANOVA Through Markov Groves |
growcurves | Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects |
growfunctions | Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data |
growth | Multivariate Normal and Elliptically-Contoured Repeated Measurements Models |
growthcurver | Simple Metrics to Summarize Growth Curves |
growthmodels | Nonlinear Growth Models |
growthrate | Bayesian reconstruction of growth velocity |
growthrates | Estimate Growth Rates from Experimental Data |
grplasso | Fitting User-Specified Models with Group Lasso Penalty |
grpreg | Regularization Paths for Regression Models with Grouped Covariates |
grpregOverlap | Penalized Regression Models with Overlapping Grouped Covariates |
grpSLOPE | Group Sorted L1 Penalized Estimation |
grpss | Group Screening and Selection |
GrpString | Patterns and Statistical Differences Between Two Groups of Strings |
grr | Alternative Implementations of Base R Functions |
GRS.test | GRS Test for Portfolio Efficiency, Its Statistical Power Analysis, and Optimal Significance Level Calculation |
grt | General Recognition Theory |
GRTo | Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes |
GSA | Gene Set Analysis |
GSAfisherCombined | Gene Set Analysis with Fisher Combined Method |
GSAgm | Gene Set Analysis using the Gamma Method |
gsalib | Utility Functions For GATK |
GSAQ | Gene Set Analysis with QTL |
gsarima | Two functions for Generalized SARIMA time series simulation |
gsbDesign | Group Sequential Bayes Design |
gscounts | Group Sequential Designs with Negative Binomial Outcomes |
gsDesign | Group Sequential Design |
GSE | Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data |
gsEasy | Gene Set Enrichment Analysis in R |
GSED | Group Sequential Enrichment Design |
gSeg | Graph-Based Change-Point Detection (g-Segmentation) |
gSEM | Semi-Supervised Generalized Structural Equation Modeling |
gset | Group Sequential Design in Equivalence Studies |
gsg | Calculation of selection coefficients |
gsheet | Download Google Sheets Using Just the URL |
GSIF | Global Soil Information Facilities |
gskat | GEE_KM |
gsl | Wrapper for the Gnu Scientific Library |
gsloid | Global Sea Level and Oxygen Isotope Data |
GSM | Gamma Shape Mixture |
gsmoothr | Smoothing tools |
GSMX | Multivariate Genomic Selection |
GSODR | Global Surface Summary of the Day ('GSOD') Weather Data Client |
GSparO | Group Sparse Optimization |
gsrsb | Group Sequential Refined Secondary Boundary |
gss | General Smoothing Splines |
gsscopu | Copula Density and 2-D Hazard Estimation using Smoothing Splines |
GSSE | Genotype-Specific Survival Estimation |
gstat | Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation |
gStream | Graph-Based Sequential Change-Point Detection for Streaming Data |
gsubfn | Utilities for Strings and Function Arguments |
gsw | Gibbs Sea Water Functions |
GsymPoint | Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests |
gsynth | Generalized Synthetic Control Method |
gt4ireval | Generalizability Theory for Information Retrieval Evaluation |
gtable | Arrange 'Grobs' in Tables |
gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |
gte | Generalized Turnbull's Estimator |
gTests | Graph-Based Two-Sample Tests |
gtheory | Apply Generalizability Theory with R |
gtools | Various R Programming Tools |
gtop | Game-Theoretically OPtimal (GTOP) Reconciliation Method |
gtrendsR | Perform and Display Google Trends Queries |
gtWAS | Genome and Transcriptome Wide Association Study |
gtx | Genetics ToolboX |
guardianapi | Access 'The Guardian' Newspaper Open Data API |
GuardianR | The Guardian API Wrapper |
Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |
guess | Adjust Estimates of Learning for Guessing |
GUIDE | GUI for DErivatives in R |
GUIgems | Graphical User Interface for Generalized Multistate Simulation Model |
GUILDS | Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure |
GUIProfiler | Graphical User Interface for Rprof() |
gumbel | The Gumbel-Hougaard Copula |
GUniFrac | Generalized UniFrac Distances |
gunsales | Statistical Analysis of Monthly Background Checks of Gun Purchases |
gustave | A User-Oriented Statistical Toolkit for Analytical Variance Estimation |
gutenbergr | Download and Process Public Domain Works from Project Gutenberg |
GUTS | Fast Calculation of the Likelihood of a Stochastic Survival Model |
GVARX | Perform Stationary Global Vector Autoregression Estimation and Inference |
gvc | Global Value Chains Tools |
gvcm.cat | Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs |
gvcR | Genotypic Variance Components |
gvlma | Global Validation of Linear Models Assumptions |
GWAF | Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data |
GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |
GWASinlps | Nonlocal Prior Based Iterative SNP Selection Tool for Genome-Wide Association Studies |
gwdegree | A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models |
gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |
gwfa | Geographically Weighted Fractal Analysis |
GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |
gWidgets | gWidgets API for Building Toolkit-Independent, Interactive GUIs |
gWidgets2 | Rewrite of gWidgets API for Simplified GUI Construction |
gWidgets2RGtk2 | Implementation of gWidgets2 for the RGtk2 Package |
gWidgets2tcltk | Toolkit Implementation of gWidgets2 for tcltk |
gWidgetsRGtk2 | Toolkit Implementation of gWidgets for RGtk2 |
gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |
GWLelast | Geographically Weighted Logistic Elastic Net Regression |
GWmodel | Geographically-Weighted Models |
gWQS | Generalized Weighted Quantile Sum Regression |
GWRM | Generalized Waring Regression Model for Count Data |
gwrpvr | Genome-Wide Regression P-Value (Gwrpv) |
gwrr | Fits geographically weighted regression models with diagnostic tools |
GWSDAT | GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) |
GWsignif | Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests |
GxM | Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models |
gym | Provides Access to the OpenAI Gym API |
gyriq | Kinship-Adjusted Survival SNP-Set Analysis |
h2o | R Interface for 'H2O' |
h2o4gpu | Interface to 'H2O4GPU' |
h5 | Interface to the 'HDF5' Library |
haarfisz | Software to perform Haar Fisz transforms |
hablar | Convert Data Types and Get Non-Astonishing Results |
HAC | Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC) |
HadoopStreaming | Utilities for using R scripts in Hadoop streaming |
hail | Read HYDRA Rainfall Data |
halfcircle | Plot Halfcircle Diagram |
hamlet | Hierarchical Optimal Matching and Machine Learning Toolbox |
HandTill2001 | Multiple Class Area under ROC Curve |
handyplots | Handy Plots |
hansard | Provides Easy Downloading Capabilities for the UK Parliament API |
HAP.ROR | Recursive Organizer (ROR) |
hapassoc | Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm |
HapEstXXR | Multi-Locus Stepwise Regression |
Hapi | Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells |
HAPim | HapIM |
Haplin | Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes |
haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |
haploR | Query 'HaploReg', 'RegulomeDB', 'LDlink' |
haploReconstruct | Reconstruction of Haplotype-Blocks from Time Series Data |
HaploSim | Functions to simulate haplotypes |
haplotyper | Tool for Clustering Genotypes in Haplotypes |
haplotypes | Haplotype Inference and Statistical Analysis of Genetic Variation |
happybiRthday | Calculate Upcoming Birthday Dates of Github Repos |
happytime | Two Games to Relieve the Boredom |
hapsim | Haplotype Data Simulation |
HardyWeinberg | Statistical Tests and Graphics for Hardy-Weinberg Equilibrium |
HARModel | Heterogeneous Autoregressive Models |
harmonicmeanp | Harmonic Mean p-Values and Model Averaging by Mean Maximum Likelihood |
HarmonicRegression | Harmonic Regression to One or more Time Series |
harrietr | Wrangle Phylogenetic Distance Matrices and Other Utilities |
harrypotter | Palettes Generated from All "Harry Potter" Movies |
HARtools | Read HTTP Archive ('HAR') Data |
Harvest.Tree | Harvest the Classification Tree |
harvestr | A Parallel Simulation Framework |
hash | Full feature implementation of hash/associated arrays/dictionaries |
hashFunction | A collection of non-cryptographic hash functions |
hashids | Generate Short Unique YouTube-Like IDs (Hashes) from Integers |
hashmap | The Faster Hash Map |
hashr | Hash R Objects to Integers Fast |
hasseDiagram | Drawing Hasse Diagram |
haven | Import and Export 'SPSS', 'Stata' and 'SAS' Files |
hawkes | Hawkes process simulation and calibration toolkit |
hazer | Identifying Foggy and Cloudy Images by Quantifying Haziness |
hazus | Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters |
hBayesDM | Hierarchical Bayesian Modeling of Decision-Making Tasks |
hbdct | Hierarchical Bayesian Design for Clinical Trials |
HBglm | Hierarchical Bayesian Regression for GLMs |
hbim | Hill/Bliss Independence Model for Combination Vaccines |
hbm | Hierarchical Block Matrix Analysis |
hbmem | Hierarchical Bayesian Analysis of Recognition Memory |
hbsae | Hierarchical Bayesian Small Area Estimation |
HBSTM | Hierarchical Bayesian Space-Time models for Gaussian space-time data |
hcandersenr | H.C. Andersens Fairy Tales |
hcc | Hidden correlation check |
hcci | Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap) |
HCmodelSets | Regression with a Large Number of Potential Explanatory Variables |
hcp | Change Point Estimation for Regression with Heteroscedastic Data |
HCR | Causal Discovery from Discrete Data using Hidden Compact Representation |
HCT | Calculates Significance Criteria and Power for a Single Arm Trial |
hctrial | Using Historical Controls for Designing Phase II Clinical Trials |
hda | Heteroscedastic Discriminant Analysis |
hdbinseg | Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation |
HDCI | High Dimensional Confidence Interval Based on Lasso and Bootstrap |
HDclassif | High Dimensional Supervised Classification and Clustering |
HDclust | Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks |
HDcpDetect | Detect Change Points in Means of High Dimensional Data |
HDDesign | Sample Size Calculation for High Dimensional Classification Study |
hddplot | Use Known Groups in High-Dimensional Data to Derive Scores for Plots |
hddtools | Hydrological Data Discovery Tools |
hdf5r | Interface to the 'HDF5' Binary Data Format |
HDGLM | Tests for High Dimensional Generalized Linear Models |
hdi | High-Dimensional Inference |
HDInterval | Highest (Posterior) Density Intervals |
hdlm | Fitting High Dimensional Linear Models |
hdm | High-Dimensional Metrics |
HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |
hdme | High-Dimensional Regression with Measurement Error |
hdnom | Benchmarking and Visualization Toolkit for Penalized Cox Models |
HDoutliers | Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers |
hdpca | Principal Component Analysis in High-Dimensional Data |
HDPenReg | High-Dimensional Penalized Regression |
hdrcde | Highest Density Regions and Conditional Density Estimation |
hds | Hazard Discrimination Summary |
HDtest | High Dimensional Hypothesis Testing for Mean Vectors, Covariance Matrices, and White Noise of Vector Time Series |
HDtweedie | The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm |
healthcareai | Tools for Healthcare Machine Learning |
heatex | Heat exchange calculations during physical activity |
heatmap.plus | Heatmap with more sensible behavior |
heatmap3 | An Improved Heatmap Package |
heatmapFit | Fit Statistic for Binary Dependent Variable Models |
heatmaply | Interactive Cluster Heat Maps Using 'plotly' |
heatwaveR | Detect Heatwaves and Cold-Spells |
heavy | Robust Estimation Using Heavy-Tailed Distributions |
hedgehog | Property-Based Testing |
heims | Decode and Validate HEIMS Data from Department of Education, Australia |
helixvis | Visualize Alpha-Helical Peptide Sequences |
HellCor | The Hellinger Correlation |
hellno | Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()' |
helloJavaWorld | Hello Java World |
helminthR | Access London Natural History Museum Host-Helminth Record Database |
HelpersMG | Tools for Earth Meteorological Analysis |
helsinki | R Tools for Helsinki Open Data |
HEMDAG | Hierarchical Ensemble Methods for Directed Acyclic Graphs |
heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |
here | A Simpler Way to Find Your Files |
hergm | Hierarchical Exponential-Family Random Graph Models |
heritability | Marker-Based Estimation of Heritability Using Individual Plant or Plot Data |
HeritSeq | Heritability of Gene Expression for Next-Generation Sequencing |
hermite | Generalized Hermite Distribution |
hero | Sandwich Smoother |
hesim | Health-Economic Simulation Modeling and Decision Analysis |
het.test | White's Test for Heteroskedasticity |
hetGP | Heteroskedastic Gaussian Process Modeling and Design under Replication |
hetmeta | Heterogeneity Measures in Meta-Analysis |
hett | Heteroscedastic t-Regression |
heuristica | Heuristics Including Take the Best and Unit-Weight Linear |
hexbin | Hexagonal Binning Routines |
hexSticker | Create Hexagon Sticker in R |
HextractoR | Integrated Tool for Hairping Extraction of RNA Sequences |
hextri | Hexbin Plots with Triangles |
hexView | Viewing Binary Files |
hflights | Flights that departed Houston in 2011 |
hgam | High-dimensional Additive Modelling |
hglasso | Learning graphical models with hubs |
hgm | Holonomic Gradient Method and Gradient Descent |
HGNChelper | Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols |
HGSL | Heterogeneous Group Square-Root Lasso |
hgutils | Collection of Utility Functions |
HH | Statistical Analysis and Data Display: Heiberger and Holland |
HHG | Heller-Heller-Gorfine Tests of Independence and Equality of Distributions |
hhh4contacts | Age-Structured Spatio-Temporal Models for Infectious Disease Counts |
hhi | Calculate and Visualize the Herfindahl-Hirschman Index |
hht | The Hilbert-Huang Transform: Tools and Methods |
HI | Simulation from distributions supported by nested hyperplanes |
HiCblock | Systematic Analysis of Architectural Proteins and Functional Elements in Blocking Long-Range Contacts Between Loci |
HiCfeat | Multiple Logistic Regression for 3D Chromatin Domain Border Analysis |
HiCglmi | Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms |
HiClimR | Hierarchical Climate Regionalization |
HiCseg | Detection of domains in HiC data |
hiddenf | The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity |
HiddenMarkov | Hidden Markov Models |
HiDimDA | High Dimensional Discriminant Analysis |
hier.part | Hierarchical Partitioning |
hierarchicalDS | Functions For Performing Hierarchical Analysis of Distance Sampling Data |
hierarchicalSets | Set Data Visualization Using Hierarchies |
hierband | Convex Banding of the Covariance Matrix |
hierDiversity | Hierarchical Multiplicative Partitioning of Complex Phenotypes |
HierDpart | Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems |
hierfstat | Estimation and Tests of Hierarchical F-Statistics |
hierNet | A Lasso for Hierarchical Interactions |
HierO | A graphical user interface for calculating power and sample size for hierarchical data |
hiertest | Convex Hierarchical Testing of Interactions |
HIest | Hybrid index estimation |
highcharter | A Wrapper for the 'Highcharts' Library |
highD2pop | Two-Sample Tests for Equality of Means in High Dimension |
HighDimOut | Outlier Detection Algorithms for High-Dimensional Data |
highfrequency | Tools for Highfrequency Data Analysis |
highlight | Syntax Highlighter |
highlightHTML | Highlight HTML Text and Tables |
highmean | Two-Sample Tests for High-Dimensional Mean Vectors |
highr | Syntax Highlighting for R Source Code |
highriskzone | Determining and Evaluating High-Risk Zones |
highSCREEN | High-Throughput Screening for Plate Based Assays |
highTtest | Simultaneous Critical Values for t-Tests in Very High Dimensions |
higrad | Statistical Inference for Online Learning and Stochastic Approximation via HiGrad |
hillmakeR | Perform occupancy analysis |
hillR | Diversity Through Hill Numbers |
HiLMM | Estimation of Heritability in Linear Mixed Models |
HIMA | High-Dimensional Mediation Analysis |
hindexcalculator | H-Index Calculator using Data from a Web of Science (WoS) Citation Report |
hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |
hiPOD | hierarchical Pooled Optimal Design |
hipread | Read Hierarchical Fixed Width Files |
HiResTEC | Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data |
hIRT | Hierarchical Item Response Theory Models |
hisse | Hidden State Speciation and Extinction |
HistData | Data Sets from the History of Statistics and Data Visualization |
HistDAWass | Histogram-Valued Data Analysis |
histmdl | A Most Informative Histogram-Like Model |
histogram | Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins |
HistogramTools | Utility Functions for R Histograms |
historydata | Data Sets for Historians |
histry | Enhanced Command History Tracking for R Sessions and Dynamic Documents |
hit | Hierarchical Inference Testing |
hitandrun | "Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes |
HIV.LifeTables | HIV calibrated model life tables for countries with generalized HIV epidemics |
hive | Hadoop InteractiVE |
HiveR | 2D and 3D Hive Plots for R |
HK80 | Conversion Tools for HK80 Geographical Coordinate System |
hkclustering | Ensemble Clustering using K Means and Hierarchical Clustering |
hkevp | Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012) |
hkex.api | API to Retrieve Data from Hong Kong Stock Exchange |
HKprocess | Hurst-Kolmogorov Process |
HLMdiag | Diagnostic Tools for Hierarchical (Multilevel) Linear Models |
HLSM | Hierarchical Latent Space Network Model |
HMB | Hierarchical Model-Based Estimation Approach |
HMDHFDplus | Read Human Mortality Database and Human Fertility Database Data from the Web |
hmeasure | The H-Measure and Other Scalar Classification Performance Metrics |
hmi | Hierarchical Multiple Imputation |
Hmisc | Harrell Miscellaneous |
HMM | HMM - Hidden Markov Models |
hmm.discnp | Hidden Markov Models with Discrete Non-Parametric Observation Distributions |
HMMCont | Hidden Markov Model for Continuous Observations Processes |
HMMcopula | Markov Regime Switching Copula Models Estimation and Goodness of Fit |
HMMEsolver | A Fast Solver for Henderson Mixed Model Equation via Row Operations |
HMMextra0s | Hidden Markov Models with Extra Zeros |
hmmm | Hierarchical Multinomial Marginal Models |
HMMpa | Analysing Accelerometer Data Using Hidden Markov Models |
HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |
HMPTrees | Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data |
HMR | Flux Estimation with Static Chamber Data |
hms | Pretty Time of Day |
HMVD | Group Association Test using a Hidden Markov Model |
hNMF | Hierarchical Non-Negative Matrix Factorization |
hnp | Half-Normal Plots with Simulation Envelopes |
hoa | Higher Order Likelihood Inference |
hoardeR | Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices |
hoardr | Manage Cached Files |
hogsvdR | Higher-Order Generalized Singular Value Decomposition |
holdem | Texas Holdem Simulator |
Holidays | Holiday and Half-Day Data, for Use with the 'TimeWarp' Package |
homals | Gifi Methods for Optimal Scaling |
homeR | Useful Functions for Building Physics |
Homeric | Doughnut Plots |
hommel | Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method |
homologene | Quick Access to Homology Information |
homomorpheR | Homomorphic Computations in R |
HomoPolymer | Theoretical Model to Simulate Radical Polymerization |
homtest | Homogeneity tests for Regional Frequency Analysis |
hopbyhop | Transmissions and Receptions in a Hop by Hop Network |
horizon | Horizon Search Algorithm |
HoRM | Supplemental Functions and Datasets for "Handbook of Regression Methods" |
hornpa | Horn's (1965) Test to Determine the Number of Components/Factors |
horserule | Flexible Non-Linear Regression with the HorseRule Algorithm |
horseshoe | Implementation of the Horseshoe Prior |
hot.deck | Multiple Hot-Deck Imputation |
HotDeckImputation | Hot Deck Imputation Methods for Missing Data |
Hotelling | Hotelling's T^2 Test and Variants |
hotspot | Software Hotspot Analysis |
hotspots | Hot Spots |
housingData | U.S. Housing Data from 2008 to 2016 |
howmany | A lower bound for the number of correct rejections |
HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |
hpcwld | High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion |
hpiR | House Price Indexes |
hpoPlot | Functions for Plotting HPO Terms |
hqmisc | Miscellaneous convenience functions and dataset |
hqreg | Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression |
hR | Toolkit for Data Analytics in Human Resources |
hrbrthemes | Additional Themes, Theme Components and Utilities for 'ggplot2' |
hrIPW | Hazard Ratio Estimation using Cox Model Weighted by the Estimated Propensity Score |
HRM | High-Dimensional Repeated Measures |
HRQoL | Health Related Quality of Life Analysis |
HRW | Datasets, Functions and Scripts for Semiparametric Regression Supporting Harezlak, Ruppert & Wand (2018) |
HSAR | Hierarchical Spatial Autoregressive Model |
HSAUR | A Handbook of Statistical Analyses Using R (1st Edition) |
HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |
HSAUR3 | A Handbook of Statistical Analyses Using R (3rd Edition) |
hsdar | Manage, Analyse and Simulate Hyperspectral Data |
HSDiC | Homogeneity and Sparsity Detection Incorporating Prior Constraint Information |
hSDM | hierarchical Bayesian species distribution models |
hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |
hsm | A Path-Based BCD for Proximal Function of Latent Group Lasso |
hsmm | Hidden Semi Markov Models |
hsphase | Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data |
HSSVD | Biclustering with Heterogeneous Variance |
htdp | Horizontal Time Dependent Positioning |
htm2txt | Convert Html into Text |
htmltab | Assemble Data Frames from HTML Tables |
htmlTable | Advanced Tables for Markdown/HTML |
htmltidy | Tidy Up and Test XPath Queries on HTML and XML Content |
htmltools | Tools for HTML |
HTMLUtils | Facilitates Automated HTML Report Creation |
htmlwidgets | HTML Widgets for R |
htree | Historical Tree Ensembles for Longitudinal Data |
hts | Hierarchical and Grouped Time Series |
HTSCluster | Clustering High-Throughput Transcriptome Sequencing (HTS) Data |
HTSSIP | High Throughput Sequencing of Stable Isotope Probing Data Analysis |
httk | High-Throughput Toxicokinetics |
httpcache | Query Cache for HTTP Clients |
httpcode | 'HTTP' Status Code Helper |
httping | 'Ping' 'URLs' to Time 'Requests' |
httpRequest | Basic HTTP Request |
httptest | A Test Environment for HTTP Requests |
httpuv | HTTP and WebSocket Server Library |
httr | Tools for Working with URLs and HTTP |
hues | Distinct Colours Palettes Based on 'iwanthue' |
huge | High-Dimensional Undirected Graph Estimation |
HUM | compute HUM value and visualize ROC curves |
humanFormat | Human-friendly formatting functions |
humaniformat | A Parser for Human Names |
humanize | Create Values for Human Consumption |
humanleague | Synthetic Population Generator |
humidity | Calculate Water Vapor Measures from Temperature and Dew Point |
hunspell | High-Performance Stemmer, Tokenizer, and Spell Checker |
HURDAT | Hurricane Re-Analysis Project |
hurdlr | Zero-Inflated and Hurdle Modelling Using Bayesian Inference |
hurricaneexposure | Explore and Map County-Level Hurricane Exposure in the United States |
hutils | Miscellaneous R Functions and Aliases |
hutilscpp | Miscellaneous Functions in C++ |
huxtable | Easily Create and Style Tables for LaTeX, HTML and Other Formats |
HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |
hwde | Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci |
HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing |
HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |
hwriter | HTML Writer - Outputs R objects in HTML format |
hwwntest | Tests of White Noise using Wavelets |
HWxtest | Exact Tests for Hardy-Weinberg Proportions |
hybridEnsemble | Build, Deploy and Evaluate Hybrid Ensembles |
HybridFS | A Hybrid Filter-Wrapper Feature Selection Method |
hybridHclust | Hybrid Hierarchical Clustering |
HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |
hybridModels | Stochastic Hybrid Models in Dynamic Networks |
HydeNet | Hybrid Bayesian Networks Using R and JAGS |
hydroApps | Tools and models for hydrological applications |
hydrogeo | Groundwater Data Presentation and Interpretation |
hydroGOF | Goodness-of-Fit Functions for Comparison of Simulated and Observed Hydrological Time Series |
hydrolinks | Hydrologic Network Linking Data and Tools |
HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |
hydroPSO | Particle Swarm Optimisation, with Focus on Environmental Models |
hydroscoper | Interface to the Greek National Data Bank for Hydrometeorological Information |
hydrostats | Hydrologic Indices for Daily Time Series Data |
hydroTSM | Time Series Management, Analysis and Interpolation for Hydrological Modelling |
hyfo | Hydrology and Climate Forecasting |
hyper.fit | Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter |
hyper2 | The Hyperdirichlet Distribution, Mark 2 |
HyperbolicDist | The hyperbolic distribution |
hypercube | Organizing Data in a Hypercube |
hypergate | Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry |
hypergea | Hypergeometric Tests |
hypergeo | The Gauss Hypergeometric Function |
hypersampleplan | Attribute Sampling Plan with Exact Hypergeometric Probabilities using Chebyshev Polynomials |
hyperSMURF | Hyper-Ensemble Smote Undersampled Random Forests |
hyperSpec | Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...) |
hypervolume | High Dimensional Geometry and Set Operations Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls |
hyphenatr | Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library |
HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |
hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |
hypothesisr | Wrapper for the 'Hypothes.is' Web Annotation Service |
HyRiM | Multicriteria Risk Management using Zero-Sum Games with Vector-Valued Payoffs that are Probability Distributions |
HYRISK | Hybrid Methods for Addressing Uncertainty in RISK Assessments |
hysteresis | Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses |
hzar | Hybrid Zone Analysis using R |
IAbin | Plotting N-T Plane for Decision on Performing an Interim Analysis |
iadf | Analysis of Intra Annual Density Fluctuations |
IalsaSynthesis | Synthesizing Information Across Collaborating Research |
IAPWS95 | Thermophysical Properties of Water and Steam |
IASD | Model Selection for Index of Asymmetry Distribution |
IAT | Cleaning and Visualizing Implicit Association Test (IAT) Data |
IATanalytics | Compute Effect Sizes and Reliability for Implicit Association Test (IAT) Data |
IATScore | Scoring Algorithm for the Implicit Association Test (IAT) |
IATscores | Implicit Association Test Scores Using Robust Statistics |
iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH Data |
IBCF.MTME | Item Based Collaborative Filtering for Multi-Trait and Multi-Environment Data |
ibd | Incomplete Block Designs |
IBDhaploRtools | Functions for the Analysis of IBD Haplo Output |
IBDLabels | Convert Between Different IBD-State Labelling Schemes |
ibdreg | Regression Methods for IBD Linkage With Covariates |
IBDsim | Simulation of Chromosomal Regions Shared by Family Members |
ibeemd | Irregular-lattice based ensemble empirical mode decomposition |
ibelief | Belief Function Implementation |
ibm | Individual Based Models in R |
ibmcraftr | Toolkits to Develop Individual-Based Models in Infectious Disease |
ibmdbR | IBM in-Database Analytics for R |
ibmsunburst | Generate Personality Insights Sunburst Diagrams |
Iboot | Iboot: iterated bootstrap tests and confidence sets |
ibr | Iterative Bias Reduction |
IBrokers | R API to Interactive Brokers Trader Workstation |
ibs | Integral of B-Spline Functions |
iBST | Improper Bagging Survival Tree |
ic.infer | Inequality Constrained Inference in Linear Normal Situations |
iC10 | A Copy Number and Expression-Based Classifier for Breast Tumours |
iC10TrainingData | Training Datasets for iC10 Package |
IC2 | Inequality and Concentration Indices and Curves |
ic50 | Standardized high-throughput evaluation of cell-based compound screens |
ica | Independent Component Analysis |
ICAFF | Imperialist Competitive Algorithm |
ical | 'iCalendar' Parsing |
icamix | Estimation of ICA Mixture Models |
ICAOD | Optimal Designs for Nonlinear Models |
icapca | Mixed ICA/PCA |
icarus | Calibrates and Reweights Units in Samples |
ICBayes | Bayesian Semiparametric Models for Interval-Censored Data |
ICC | Facilitating Estimation of the Intraclass Correlation Coefficient |
ICC.Sample.Size | Calculation of Sample Size and Power for ICC |
ICcalib | Cox Model with Interval-Censored Starting Time of a Covariate |
iccbeta | Multilevel Model Intraclass Correlation for Slope Heterogeneity |
ICCbin | Facilitates Clustered Binary Data Generation, and Estimation of Intracluster Correlation Coefficient (ICC) for Binary Data |
ICcforest | An Ensemble Method for Interval-Censored Survival Data |
icd | Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes |
icd.data | International Classifcation of Diseases (ICD) Data |
ICD10gm | Metadata Processing for the German Modification of the ICD-10 Coding System |
icdGLM | EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models |
ICDS | Identification of Cancer Dysfunctional Subpathway by Integrating DNA Methylation, Copy Number Variation, and Gene Expression Data |
ICE | Iterated Conditional Expectation |
ICEbox | Individual Conditional Expectation Plot Toolbox |
IceCast | Apply Statistical Post-Processing to Improve Sea Ice Predictions |
ICEinfer | Incremental Cost-Effectiveness Inference using Two Unbiased Samples |
icenReg | Regression Models for Interval Censored Data |
icensBKL | Accompanion to the Book on Interval Censoring by Bogaerts, Komarek, and Lesaffre |
icensmis | Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes |
icesAdvice | Functions Related to ICES Advice |
icesDatras | DATRAS Trawl Database Web Services |
icesSAG | Stock Assessment Graphs Database Web Services |
icesTAF | Functions to Support the ICES Transparent Assessment Framework |
icesVocab | ICES Vocabularies Database Web Services |
ICGE | Estimation of number of clusters and identification of atypical units |
ICGOR | Fit Generalized Odds Rate Hazards Model with Interval Censored Data |
iClick | A Button-Based GUI for Financial and Economic Data Analysis |
iCluster | Integrative clustering of multiple genomic data types |
icmm | Empirical Bayes Variable Selection via ICM/M Algorithm |
icosa | Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra |
icpsrdata | Reproducible Data Retrieval from the ICPSR Archive |
icr | Compute Krippendorff's Alpha |
ICRanks | Simultaneous Confidence Intervals for Ranks |
icRSF | A Modified Random Survival Forest Algorithm |
ICS | Tools for Exploring Multivariate Data via ICS/ICA |
ICSNP | Tools for Multivariate Nonparametrics |
ICSOutlier | Outlier Detection Using Invariant Coordinate Selection |
ICSShiny | ICS via a Shiny Application |
ICsurv | A package for semiparametric regression analysis of interval-censored data |
icsurvROC | Interval Censored Survival ROC |
icsw | Inverse Compliance Score Weighting |
ICtest | Estimating and Testing the Number of Interesting Components in Linear Dimension Reduction |
ICV | Indirect Cross-Validation (ICV) for Kernel Density Estimation |
idar | Individual Diversity-Area Relationships |
idbg | R debugger |
idbr | R Interface to the US Census Bureau International Data Base API |
IDCard | Update Chinese ID Card Number to Eighteen Digits |
IDE | Integro-Difference Equation Spatio-Temporal Models |
idealstan | Generalized IRT Ideal Point Models with 'Stan' |
idefix | Efficient Designs for Discrete Choice Experiments |
idem | Inference in Randomized Controlled Trials with Death and Missingness |
idendr0 | Interactive Dendrograms |
identity | Jacquard Condensed Coefficients of Identity |
ider | Various Methods for Estimating Intrinsic Dimension |
IDetect | Isolate-Detect Methodology for Multiple Change-Point Detection |
IDF | Estimation and Plotting of IDF Curves |
iDINGO | Integrative Differential Network Analysis in Genomics |
idm | Incremental Decomposition Methods |
IDmining | Intrinsic Dimension for Data Mining |
idmTPreg | Regression Model for Progressive Illness Death Data |
iDOS | Integrated Discovery of Oncogenic Signatures |
IDPmisc | 'Utilities of Institute of Data Analyses and Process Design (www.zhaw.ch/idp)' |
IDPSurvival | Imprecise Dirichlet Process for Survival Analysis |
idr | Irreproducible discovery rate |
ids | Generate Random Identifiers |
IDSpatialStats | Estimate Global Clustering in Infectious Disease |
idx2r | Convert Files to and from IDX Format to Vectors, Matrices and Arrays |
iDynoR | R Analysis package for iDynoMiCS Simulation Results |
ie2misc | Irucka Embry's Miscellaneous USGS Functions |
iECAT | Integrating External Controls into Association Test |
ieeeround | Functions to set and get the IEEE rounding mode |
iemisc | Irucka Embry's Miscellaneous Functions |
iemiscdata | Irucka Embry's Miscellaneous Data Collection |
iemisctext | Irucka Embry's Miscellaneous Text Collection |
ifa | Independent Factor Analysis |
iFad | An integrative factor analysis model for drug-pathway association inference |
ifaTools | Toolkit for Item Factor Analysis with 'OpenMx' |
ifctools | Italian Fiscal Code ('Codice Fiscale') Utilities |
IFP | Identifying Functional Polymorphisms |
ifs | Iterated Function Systems |
ifultools | Insightful Research Tools |
ig.vancouver.2014.topcolour | Instagram 2014 Vancouver Top Colour Dataset |
iGasso | Statistical Tests and Utilities for Genetic Association |
IGG | Inverse Gamma-Gamma |
IgorR | Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data) |
IGP | Interchangeable Gaussian Process Models |
igraph | Network Analysis and Visualization |
igraphdata | A Collection of Network Data Sets for the 'igraph' Package |
igraphinshiny | Use 'shiny' to Demo 'igraph' |
igraphtosonia | Convert iGraph graps to SoNIA .son files |
iGSEA | Integrative Gene Set Enrichment Analysis Approaches |
iheatmapr | Interactive, Complex Heatmaps |
ihs | Inverse Hyperbolic Sine Distribution |
IHSEP | Inhomogeneous Self-Exciting Process |
iilasso | Independently Interpretable Lasso |
IIS | Datasets to Accompany Wolfe and Schneider - Intuitive Introductory Statistics |
ijtiff | Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files |
iki.dataclim | Consistency, Homogeneity and Summary Statistics of Climatological Data |
ilc | Lee-Carter Mortality Models using Iterative Fitting Algorithms |
ILS | Interlaboratory Study |
IM | Orthogonal Moment Analysis |
imageData | Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer |
imager | Image Processing Library Based on 'CImg' |
imagerExtra | Extra Image Processing Library Based on 'imager' |
IMaGES | Independent Multiple-Sample Greedy Equivalence Search Implementation |
imageviewer | Simple 'htmlwidgets' Image Viewer with WebGL Brightness/Contrast |
imagine | IMAGing engINE, Tools for Application of Image Filters to Data Matrices |
ImaginR | Delimit and Characterize Color Phenotype of the Pearl Oyster |
IMak | Item Maker |
Imap | Interactive Mapping |
imbalance | Preprocessing Algorithms for Imbalanced Datasets |
imdbapi | Get Movie, Television Data from the 'imdb' Database |
iMediate | Likelihood Methods for Mediation Analysis |
IMFData | R Interface for International Monetary Fund(IMF) Data API |
imfr | Download Data from the International Monetary Fund's Data API |
imguR | An Imgur.com API Client Package |
IMIFA | Infinite Mixtures of Infinite Factor Analysers and Related Models |
IMIS | Increamental Mixture Importance Sampling |
iml | Interpretable Machine Learning |
IMmailgun | Send Emails using 'Mailgun' |
immer | Item Response Models for Multiple Ratings |
Immigrate | Iterative Max-Min Entropy Margin-Maximization with Interaction Terms for Feature Selection |
IMP | Interactive Model Performance Evaluation |
imp4p | Imputation for Proteomics |
IMPACT | The Impact of Items |
ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |
impimp | Imprecise Imputation for Statistical Matching |
implyr | R Interface for Apache Impala |
import | An Import Mechanism for R |
importar | Enables Importing/Loading of Packages or Functions While Creating an Alias for Them |
ImportExport | Import and Export Data |
imprProbEst | Minimum distance estimation in an imprecise probability model |
imptree | Classification Trees with Imprecise Probabilities |
imputeLCMD | A collection of methods for left-censored missing data imputation |
imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |
imputeMissings | Impute Missing Values in a Predictive Context |
imputeMulti | Imputation Methods for Multivariate Multinomial Data |
imputePSF | Impute Missing Data in Time Series Data with PSF Based Method |
imputeR | A General Multivariate Imputation Framework |
ImputeRobust | Robust Multiple Imputation with Generalized Additive Models for Location Scale and Shape |
imputeTestbench | Test Bench for the Comparison of Imputation Methods |
imputeTS | Time Series Missing Value Imputation |
imputeYn | Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares |
iMRMC | Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics) |
imsig | Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours |
IMTest | Information Matrix Test for Generalized Partial Credit Models |
in2extRemes | Into the extRemes Package |
inaparc | Initialization Algorithms for Partitioning Cluster Analysis |
inarmix | Mixture models for longitudinal count data |
inbreedR | Analysing Inbreeding Based on Genetic Markers |
inca | Integer Calibration |
incadata | Recognize and Handle Data in Formats Used by Swedish Cancer Centers |
INCATome | Internal Control Analysis of Translatome Studies by Microarrays |
IncDTW | Incremental Calculation of Dynamic Time Warping |
incgraph | Incremental Graphlet Counting for Network Optimisation |
incidence | Compute, Handle, Plot and Model Incidence of Dated Events |
incR | Analysis of Incubation Data |
inctools | Incidence Estimation Tools |
IncucyteDRC | Dose Response Curves from Incucyte Proliferation Assays |
indelmiss | Insertion Deletion Analysis While Accounting for Possible Missing Data |
IndependenceTests | Nonparametric tests of independence between random vectors |
IndepTest | Nonparametric Independence Tests Based on Entropy Estimation |
IndexNumR | Index Number Calculation |
IndianTaxCalc | Indian Income Tax Calculator |
indicspecies | Relationship Between Species and Groups of Sites |
indirect | Elicitation of Independent Conditional Means Priors for Generalised Linear Models |
INDperform | Evaluation of Indicator Performances for Assessing Ecosystem States |
IndTestPP | Tests of Independence Between Point Processes in Time |
inegiR | Integrate INEGI’s (Mexican Stats Office) API with R |
ineq | Measuring Inequality, Concentration, and Poverty |
iNEXT | Interpolation and Extrapolation for Species Diversity |
iNextPD | Interpolation and Extrapolation for Phylogenetic Diversity |
InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories |
infer | Tidy Statistical Inference |
inference | Functions to extract inferential values of a fitted model object |
InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival |
inferference | Methods for Causal Inference with Interference |
inferr | Inferential Statistics |
InfiniumPurify | Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis |
infix | Basic Infix Binary Operators |
Inflation | Core Inflation |
inflection | Finds the Inflection Point of a Curve |
influence.ME | Tools for Detecting Influential Data in Mixed Effects Models |
influence.SEM | Case Influence in Structural Equation Models |
influenceR | Software Tools to Quantify Structural Importance of Nodes in a Network |
influxdbr | R Interface to InfluxDB |
infoDecompuTE | Information Decomposition of Two-Phase Experiments |
Information | Data Exploration with Information Theory (Weight-of-Evidence and Information Value) |
InformationValue | Performance Analysis and Companion Functions for Binary Classification Models |
InformativeCensoring | Multiple Imputation for Informative Censoring |
informR | Sequence Statistics for Relational Event Models |
infotheo | Information-Theoretic Measures |
InfoTrad | Calculates the Probability of Informed Trading (PIN) |
infra | An Infrastructure Proxy Function |
infraFDTD.assist | IO Help for infraFDTD Model |
infuser | A Very Basic Templating Engine |
Infusion | Inference Using Simulation |
infutil | Information Utility |
ini | Read and Write '.ini' Files |
injectoR | R Dependency Injection |
InjurySeverityScore | Translate ICD-9 into Injury Severity Score |
INLABMA | Bayesian Model Averaging with INLA |
inlabru | Spatial Inference using Integrated Nested Laplace Approximation |
inline | Functions to Inline C, C++, Fortran Function Calls from R |
inlmisc | Miscellaneous Functions for the USGS INL Project Office |
iNOTE | Integrative Network Omnibus Total Effect Test |
inpdfr | Analyse Text Documents Using Ecological Tools |
inplace | In-place Operators for R |
InPosition | Inference Tests for ExPosition |
insect | Informatic Sequence Classification Trees |
insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes |
InSilicoVA | Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm |
insol | Solar Radiation |
InspectChangepoint | High-Dimensional Changepoint Estimation via Sparse Projection |
inspectr | Perform Basic Checks of Dataframes |
INSPIRE | Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets |
install.load | Check, Install and Load CRAN & USGS GRAN Packages |
installr | Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!) |
instaR | Access to Instagram API via R |
instruments | Estimate Regression Models with Instrumental Variables |
insuranceData | A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance |
insurancerating | Analytic Insurance Rating Techniques |
intamap | Procedures for Automated Interpolation |
intamapInteractive | Interactive Add-on Functionality for 'intamap' |
intccr | Semiparametric Competing Risks Regression under Interval Censoring |
intcensROC | Fast Spline Function Based Constrained Maximum Likelihood Estimator for AUC Estimation of Interval Censored Survival Data |
IntClust | Integration of Multiple Data Sets with Clustering Techniques |
integIRTy | Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory |
IntegrateBs | Integration for B-Spline |
IntegratedJM | Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature |
IntegratedMRF | Integrated Prediction using Uni-Variate and Multivariate Random Forests |
Interact | Tests for marginal interactions in a 2 class response model |
interactions | Comprehensive, User-Friendly Toolkit for Probing Interactions |
interactionTest | Calculates Critical Test Statistics to Control False Discovery Rates in Marginal Effects Plots |
InteractiveIGraph | interactive network analysis and visualization |
interAdapt | interAdapt |
Interatrix | Compute Chi-Square Measures with Corrections |
intercure | Cure Rate Estimators for Interval Censored Data |
interep | Interaction Analysis of Repeatedly Measured Data |
InterfaceqPCR | GUI to Analyse qPCR Results after PMA Treatment or not |
interferenceCI | Exact Confidence Intervals in the Presence of Interference |
interflex | Multiplicative Interaction Models Diagnostics and Visualization |
interfr | Interference Color Charts for Polarized Light Microscopy |
intergraph | Coercion Routines for Network Data Objects |
interim | Scheduling Interim Analyses in Clinical Trials |
interlineaR | Importing Interlinearized Corpora and Dictionaries as Produced by Descriptive Linguistics Software |
internetarchive | An API Client for the Internet Archive |
interp | Interpolation Methods |
interplot | Plot the Effects of Variables in Interaction Terms |
Interpol | Interpolation of amino acid sequences |
Interpol.T | Hourly interpolation of multiple temperature daily series |
InterpretMSSpectrum | Interpreting High Resolution Mass Spectra |
interpretR | Binary Classifier and Regression Model Interpretation Functions |
InterSIM | Simulation of Inter-Related Genomic Datasets |
InterVA4 | Replicate and Analyse 'InterVA4' |
InterVA5 | Replicate and Analyse 'InterVA5' |
interval | Weighted Logrank Tests and NPMLE for interval censored data |
intervals | Tools for Working with Points and Intervals |
IntervalSurgeon | Operating on Integer-Bounded Intervals |
interventionalDBN | Interventional Inference for Dynamic Bayesian Networks |
IntLik | Numerical Integration for Integrated Likelihood |
IntNMF | Integrative Clustering of Multiple Genomic Dataset |
intoo | Object Oriented Intelligence |
inTrees | Interpret Tree Ensembles |
intReg | Interval Regression |
intRegGOF | Integrated Regression Goodness of Fit |
IntrinioStockAPI | Wrapper for the 'Intrinio Stock API' |
intrinsicDimension | Intrinsic Dimension Estimation |
introgress | methods for analyzing introgression between divergent lineages |
intrval | Relational Operators for Intervals |
intRvals | Analysis of Time-Ordered Event Data with Missed Observations |
intsvy | International Assessment Data Manager |
intubate | Interface to Popular R Functions for Data Science Pipelines |
inum | Interval and Enum-Type Representation of Vectors |
InvariantCausalPrediction | Invariant Causal Prediction |
InvasionCorrection | Invasion Correction |
inventorize | Inventory Analytics and Cost Calculations |
Inventorymodel | Inventory Models |
investr | Inverse Estimation/Calibration Functions |
invgamma | The Inverse Gamma Distribution |
invGauss | Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data |
invLT | Inversion of Laplace-Transformed Functions |
io | A Unified Framework for Input-Output Operations in R |
ioanalysis | Input Output Analysis |
ioncopy | Calling Copy Number Alterations in Amplicon Sequencing Data |
ionflows | Calculate the Number of Required Flows for Semiconductor Sequencing |
ionr | Test for Indifference of Indicator |
iopsych | Methods for Industrial/Organizational Psychology |
iosmooth | Functions for Smoothing with Infinite Order Flat-Top Kernels |
iotables | Importing and Manipulating Symmetric Input-Output Tables |
iotools | I/O Tools for Streaming |
ipc | Tools for Message Passing Between Processes |
IPCAPS | Iterative Pruning to Capture Population Structure |
ipcwswitch | Inverse Probability of Censoring Weights to Deal with Treatment Switch in Randomized Clinical Trials |
ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |
ipdw | Spatial Interpolation by Inverse Path Distance Weighting |
IPEC | Root Mean Square Curvature Calculation |
ipflasso | Integrative Lasso with Penalty Factors |
ipfp | Fast Implementation of the Iterative Proportional Fitting Procedure in C |
ipft | Indoor Positioning Fingerprinting Toolset |
iplots | iPlots - interactive graphics for R |
IPMpack | Builds and analyses Integral Projection Models (IPMs) |
IPMRF | Intervention in Prediction Measure (IPM) for Random Forests |
IPPP | Inhomogeneous Poisson Point Processes |
ipptoolbox | IPP Toolbox |
ipred | Improved Predictors |
iprior | Regression Modelling using I-Priors |
ips | Interfaces to Phylogenetic Software in R |
IPSUR | Introduction to Probability and Statistics Using R |
iptmnetr | Interface to the 'iPTMnet' API |
IPtoCountry | Convert IP Addresses to Country Names or Full Location with Geoplotting |
iptools | Manipulate, Validate and Resolve 'IP' Addresses |
ipumsr | Read 'IPUMS' Extract Files |
ipw | Estimate Inverse Probability Weights |
IPWboxplot | Adapted Boxplot to Missing Observations |
ipwErrorY | Inverse Probability Weighting Estimation of Average Treatment Effect with Outcome Misclassification |
IPWsurvival | Propensity Score Based Adjusted Survival Curves and Corresponding Log-Rank Statistic |
IQCC | Improved Quality Control Charts |
iqLearn | Interactive Q-Learning |
irace | Iterated Racing for Automatic Algorithm Configuration |
iRafNet | Integrative Random Forest for Gene Regulatory Network Inference |
IRATER | A R Interface for the Instantaneous RATEs (IRATE) Model |
ircor | Correlation Coefficients for Information Retrieval |
IRdisplay | 'Jupyter' Display Machinery |
iRefR | iRefIndex Manager |
iRegression | Regression Methods for Interval-Valued Variables |
iRepro | Reproducibility for Interval-Censored Data |
iRF | iterative Random Forests |
irg | Instantaneous Rate of Green Up |
IrishDirectorates | Irish Companies' Boards from 2003 to 2013 |
IRISMustangMetrics | Statistics and Metrics for Seismic Data |
IRISSeismic | Classes and Methods for Seismic Data Analysis |
IRkernel | Native R Kernel for the 'Jupyter Notebook' |
irlba | Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices |
IROmiss | Imputation Regularized Optimization Algorithm |
irr | Various Coefficients of Interrater Reliability and Agreement |
IrregLong | Analysis of Longitudinal Data with Irregular Observation Times |
irregulAR1 | Functions for Irregularly Sampled AR(1) Processes |
irrNA | Coefficients of Interrater Reliability - Generalized for Randomly Incomplete Datasets |
irtDemo | Item Response Theory Demo Collection |
irtoys | A Collection of Functions Related to Item Response Theory (IRT) |
irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models |
irtrees | Estimation of Tree-Based Item Response Models |
irtreliability | Item Response Theory Reliability |
IRTShiny | Item Response Theory via Shiny |
isa2 | The Iterative Signature Algorithm |
ISAT | Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output |
ISBF | Iterative Selection of Blocks of Features - ISBF |
isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |
iSDM | Invasive Species Distribution Modelling |
isdparser | Parse 'NOAA' Integrated Surface Data Files |
ISEtools | Tools for Ion Selective Electrodes |
IsingFit | Fitting Ising Models Using the ELasso Method |
isingLenzMC | Monte Carlo for Classical Ising Model |
IsingSampler | Sampling Methods and Distribution Functions for the Ising Model |
island | Stochastic Island Biogeography Theory Made Easy |
ISLR | Data for an Introduction to Statistical Learning with Applications in R |
ISM | Interpretive Structural Modelling (ISM) |
ismev | An Introduction to Statistical Modeling of Extreme Values |
isni | Index of Local Sensitivity to Nonignorability |
isnullptr | Check if an 'externalptr' is a Null Pointer |
Iso | Functions to Perform Isotonic Regression |
isoband | Generate Isolines and Isobands from Regularly Spaced Elevation Grids |
IsoCI | Confidence intervals for current status data based on transformations and bootstrap |
isocir | Isotonic Inference for Circular Data |
ISOcodes | Selected ISO Codes |
IsoGene | Order-Restricted Inference for Microarray Experiments |
isopam | Isopam (Clustering) |
isopat | Calculation of isotopic pattern for a given molecular formula |
isoph | Isotonic Proportional Hazards Model |
IsoplotR | Statistical Toolbox for Radiometric Geochronology |
ISOpureR | Deconvolution of Tumour Profiles |
IsoriX | Isoscape Computation and Inference of Spatial Origins using Mixed Models |
IsoSpecR | The IsoSpec Algorithm |
isotone | Active Set and Generalized PAVA for Isotone Optimization |
isotonic.pen | Penalized Isotonic Regression in one and two dimensions |
IsotopeR | Stable Isotope Mixing Model |
ISOweek | Week of the year and weekday according to ISO 8601 |
isqg | In Silico Quantitative Genetics |
ISR3 | Iterative Sequential Regression |
isva | Independent Surrogate Variable Analysis |
ISwR | Introductory Statistics with R |
italy | The Italian Survey on Household and Wealth, 2008 and 2010 |
itan | Item Analysis for Multiple Choice Tests |
itcSegment | Individual Tree Crowns Segmentation |
itemanalysis | Classical Test Theory Item Analysis |
iteRates | Parametric rate comparison |
iterators | Provides Iterator Construct for R |
iterLap | Approximate Probability Densities by Iterated Laplace Approximations |
iterpc | Efficient Iterator for Permutations and Combinations |
itertools | Iterator Tools |
itertools2 | itertools2: Functions creating iterators for efficient looping |
ITGM | Individual Tree Growth Modeling |
ITNr | Analysis of the International Trade Network |
iTOP | Inferring the Topology of Omics Data |
itree | Tools for classification and regression trees, with an emphasis on interpretability |
ITRLearn | Statistical Learning for Individualized Treatment Regime |
ITRSelect | Variable Selection for Optimal Individualized Dynamic Treatment Regime |
itsadug | Interpreting Time Series and Autocorrelated Data Using GAMMs |
itsmr | Time Series Analysis Using the Innovations Algorithm |
itunesr | Access iTunes App Store Ratings and Reviews using R |
IUPS | Incorporating Uncertainties in Propensity Scores |
iva | Instrumental Variable Analysis in Case-Control Association Studies |
ivfixed | Instrumental fixed effect panel data model |
ivmodel | Statistical Inference and Sensitivity Analysis for Instrumental Variables Model |
ivmte | Instrumental Variables: Extrapolation by Marginal Treatment Effects |
ivpack | Instrumental Variable Estimation |
ivpanel | Instrumental Panel Data Models |
ivprobit | Instrumental Variables Probit Model |
ivregEX | Create Independent Evidence in IV Analyses and Do Sensitivity Analysis in Regression and IV Analysis |
ivtools | Instrumental Variables |
iWeigReg | Improved methods for causal inference and missing data problems |
iWISA | Wavelet-Based Index of Storm Activity |
jaatha | Simulation-Based Maximum Likelihood Parameter Estimation |
jaccard | Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients |
jackknifeKME | Jackknife Estimates of Kaplan-Meier Estimators or Integrals |
jackstraw | Statistical Inference for Unsupervised Learning |
jacpop | Jaccard Index for Population Structure Identification |
JADE | Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria |
jagsUI | A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses |
JAGUAR | Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) |
james.analysis | Analysis Tools for the 'JAMES' Framework |
janeaustenr | Jane Austen's Complete Novels |
janitor | Simple Tools for Examining and Cleaning Dirty Data |
jaod | Directory of Open Access Journals Client |
jarbes | Just a Rather Bayesian Evidence Synthesis |
JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices |
JavaGD | Java Graphics Device |
JBTools | Misc Small Tools and Helper Functions for Other Code of J. Buttlar |
jcext | Extended Classification of Weather Types |
jcolors | Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2' |
Jdmbs | Monte Carlo Option Pricing Algorithms for Jump Diffusion Models with Correlational Companies |
jdx | 'Java' Data Exchange for 'R' and 'rJava' |
jeek | A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models |
jetpack | A Friendly Package Manager |
jetset | One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays |
JFE | A Menu-Driven GUI for Analyzing Data of Just Finance and Econometrics |
JGEE | Joint Generalized Estimating Equation Solver |
JGL | Performs the Joint Graphical Lasso for Sparse Inverse Covariance Estimation on Multiple Classes |
JGR | Java GUI for R |
jiebaR | Chinese Text Segmentation |
jiebaRD | Chinese Text Segmentation Data for jiebaR Package |
jipApprox | Approximate Inclusion Probabilities for Survey Sampling |
jjb | Balamuta Miscellaneous |
jlctree | Joint Latent Class Trees for Joint Modeling of Time-to-Event and Longitudinal Data |
JM | Joint Modeling of Longitudinal and Survival Data |
JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |
jmcm | Joint Mean-Covariance Models using 'Armadillo' and S4 |
JMcmprsk | Joint Models for Longitudinal Measurements and Competing Risks Failure Time Data |
jmdem | Fitting Joint Mean and Dispersion Effects Models |
JMdesign | Joint Modeling of Longitudinal and Survival Data - Power Calculation |
jmdl | Joint Mean-Correlation Regression Approach for Discrete Longitudinal Data |
jmetrik | Tools for Interacting with 'jMetrik' |
JMI | Jackknife Mutual Information |
Jmisc | Julian Miscellaneous Function |
jmotif | Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX |
jmuOutlier | Permutation Tests for Nonparametric Statistics |
jmv | The 'jamovi' Analyses |
jmvconnect | Connect to the 'jamovi' Statistical Spreadsheet |
jmvcore | Dependencies for the 'jamovi' Framework |
jocre | Joint Confidence Regions |
Johnson | Johnson Transformation |
joineR | Joint Modelling of Repeated Measurements and Time-to-Event Data |
joineRmeta | Joint Modelling for Meta-Analytic (Multi-Study) Data |
joineRML | Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes |
joint.Cox | Joint Frailty-Copula Models for Tumour Progression and Death in Meta-Analysis |
JointAI | Joint Analysis and Imputation of Incomplete Data |
jointDiag | Joint Approximate Diagonalization of a Set of Square Matrices |
JointModel | Semiparametric Joint Models for Longitudinal and Counting Processes |
JointNets | Sparse Gaussian Graphical Model Estimation, Visualization and Evaluation |
jointNmix | Joint N-Mixture Models for Site-Associated Species |
jointPm | Risk estimation using the joint probability method |
jointseg | Joint Segmentation of Multivariate (Copy Number) Signals |
joinXL | Perform Joins or Minus Queries on 'Excel' Files |
jomo | Multilevel Joint Modelling Multiple Imputation |
JOP | Joint Optimization Plot |
JoSAE | Unit-Level and Area-Level Small Area Estimation |
jose | JavaScript Object Signing and Encryption |
JOUSBoost | Implements Under/Oversampling for Probability Estimation |
jpeg | Read and write JPEG images |
JPEN | Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty |
jpmesh | Utilities for Japanese Mesh Code |
jpndistrict | Create Japanese Administration Area and Office Maps |
JQL | Jump Q-Learning for Individualized Interval-Valued Dose Rule |
jqr | Client for 'jq', a 'JSON' Processor |
JRF | Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks |
jrich | Jack-Knife Support for Evolutionary Distinctiveness Indices I and W |
jrt | Item Response Theory Modeling and Scoring for Judgment Data |
jrvFinance | Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes |
js | Tools for Working with JavaScript in R |
jskm | Kaplan-Meier Plot with 'ggplot2' |
JSM | Semiparametric Joint Modeling of Survival and Longitudinal Data |
jSonarR | jSonar Analytics Platform API for R |
jsonify | Converts 'R' Objects to Javascript Object Notation (JSON) |
jsonld | JSON for Linking Data |
jsonlite | A Robust, High Performance JSON Parser and Generator for R |
jsonstat | Interface to 'JSON-stat' |
jsonvalidate | Validate 'JSON' |
jsr223 | A 'Java' Platform Integration for 'R' with Programming Languages 'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'), and 'Kotlin' |
jstable | Create Tables from Different Types of Regression |
jstor | Read Data from JSTOR/DfR |
jsTree | Create Interactive Trees with the 'jQuery' 'jsTree' Plugin |
jtGWAS | Efficient Jonckheere-Terpstra Test Statistics |
jtools | Analysis and Presentation of Social Scientific Data |
jtrans | Johnson Transformation for Normality |
jubilee | Forecasting Long-Term Growth of the U.S. Stock Market |
jug | A Simple Web Framework for R |
Julia | Fractal Image Data Generator |
JuliaCall | Seamless Integration Between R and 'Julia' |
JumpTest | Financial Jump Detection |
junctions | The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages |
JuniperKernel | Kernel for 'Jupyter' |
junr | Access Open Data Through the 'Junar' API |
jvcoords | Principal Component Analysis (PCA) and Whitening |
jvnVaR | Value at Risk |
JWileymisc | Miscellaneous Utilities and Functions |
jwutil | Tools for Data Manipulation and Testing |
kableExtra | Construct Complex Table with 'kable' and Pipe Syntax |
kader | Kernel Adaptive Density Estimation and Regression |
kamila | Methods for Clustering Mixed-Type Data |
kangar00 | Kernel Approaches for Nonlinear Genetic Association Regression |
KANT | Package to identify and sort genes overexpressed |
kantorovich | Kantorovich Distance Between Probability Measures |
kaphom | Test the Homogeneity of Kappa Statistics |
KappaGUI | An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa |
kappalab | Non-Additive Measure and Integral Manipulation Functions |
kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |
KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics |
kaps | K-Adaptive Partitioning for Survival data |
karaoke | Remove Vocals from a Song |
KarsTS | An Interface for Microclimate Time Series Analysis |
kazaam | Tools for Tall Distributed Matrices |
kcirt | k-Cube Thurstonian IRT Models |
kde1d | Univariate Kernel Density Estimation |
kdecopula | Kernel Smoothing for Bivariate Copula Densities |
kdensity | Kernel Density Estimation with Parametric Starts and Asymmetric Kernels |
kdetrees | Nonparametric method for identifying discordant phylogenetic trees |
kdevine | Multivariate Kernel Density Estimation with Vine Copulas |
kdist | K-Distribution and Weibull Paper |
kdtools | Tools for Working with Multidimensional Data |
KDViz | Knowledge Domain Visualization |
kedd | Kernel Estimator and Bandwidth Selection for Density and Its Derivatives |
keep | Arrays with Better Control over Dimension Dropping |
kehra | Collect, Assemble and Model Air Pollution, Weather and Health Data |
kelvin | Calculate Solutions to the Kelvin Differential Equation using Bessel Functions |
Kendall | Kendall rank correlation and Mann-Kendall trend test |
kendallRandomWalks | Simulate and Visualize Kendall Random Walks and Related Distributions |
KENDL | Kernel-Smoothed Nonparametric Methods for Environmental Exposure Data Subject to Detection Limits |
KenSyn | Knowledge Synthesis in Agriculture - From Experimental Network to Meta-Analysis |
kequate | The Kernel Method of Test Equating |
keras | R Interface to 'Keras' |
kerasformula | A High-Level R Interface for Neural Nets |
kerasR | R Interface to the Keras Deep Learning Library |
kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions |
KERE | Expectile Regression in Reproducing Kernel Hilbert Space |
kergp | Gaussian Process Laboratory |
kernDeepStackNet | Kernel Deep Stacking Networks |
kerndwd | Distance Weighted Discrimination (DWD) and Kernel Methods |
kernelboot | Smoothed Bootstrap and Random Generation from Kernel Densities |
kernelFactory | Kernel Factory: An Ensemble of Kernel Machines |
Kernelheaping | Kernel Density Estimation for Heaped and Rounded Data |
KernelKnn | Kernel k Nearest Neighbors |
kernhaz | Kernel Estimation of Hazard Function in Survival Analysis |
kernlab | Kernel-Based Machine Learning Lab |
kernplus | A Kernel Regression-Based Multidimensional Wind Turbine Power Curve |
kernscr | Kernel Machine Score Test for Semi-Competing Risks |
KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |
KernSmoothIRT | Nonparametric Item Response Theory |
kexpmv | Matrix Exponential using Krylov Subspace Routines |
KeyboardSimulator | Keyboard and Mouse Input Simulation for Windows OS |
keyholder | Store Data About Rows |
keyplayer | Locating Key Players in Social Networks |
keypress | Wait for a Key Press in a Terminal |
keyring | Access the System Credential Store from R |
keyringr | Decrypt Passwords from Gnome Keyring, Windows Data Protection API and macOS Keychain |
KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |
kfda | Kernel Fisher Discriminant Analysis |
kfigr | Integrated Code Chunk Anchoring and Referencing for R Markdown Documents |
KFKSDS | Kalman Filter, Smoother and Disturbance Smoother |
kgc | Koeppen-Geiger Climatic Zones |
KGode | Kernel Based Gradient Matching for Parameter Inference in Ordinary Differential Equations |
kgschart | KGS Rank Graph Parser |
khroma | Colour Schemes for Archaeological Data Visualization |
kidney.epi | Kidney Functions: Clinical and Epidemiological |
kimisc | Kirill's Miscellaneous Functions |
kin.cohort | Analysis of Kin-Cohort Studies |
kineticF | Framework for the Analysis of Kinetic Visual Field Data |
kinship2 | Pedigree Functions |
kirby21.base | Example Data from the Multi-Modal MRI 'Reproducibility' Resource |
kirby21.fmri | Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource |
kirby21.t1 | Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource |
kissmig | a Keep It Simple Species Migration Model |
kitagawa | Spectral Response of Water Wells to Harmonic Strain and Pressure Signals |
kknn | Weighted k-Nearest Neighbors |
klaR | Classification and Visualization |
klausuR | Multiple Choice Test Evaluation |
klin | Linear equations with Kronecker structure |
km.ci | Confidence intervals for the Kaplan-Meier estimator |
kmconfband | Kaplan-Meier Simultaneous Confidence Band for the Survivor Function |
kmcudaR | 'Yinyang' K-Means and K-NN using NVIDIA CUDA |
KMDA | Kernel-Based Metabolite Differential Analysis |
kmed | Distance-Based k-Medoids |
kmer | Fast K-Mer Counting and Clustering for Biological Sequence Analysis |
kmeRs | K-Mers Similarity Score Matrix |
KMgene | Gene-Based Association Analysis for Complex Traits |
kmi | Kaplan-Meier Multiple Imputation for the Analysis of Cumulative Incidence Functions in the Competing Risks Setting |
kml | K-Means for Longitudinal Data |
kml3d | K-Means for Joint Longitudinal Data |
kmlcov | Clustering longitudinal data using the likelihood as a metric of distance |
kmlShape | K-Means for Longitudinal Data using Shape-Respecting Distance |
kmodR | K-Means with Simultaneous Outlier Detection |
KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
KnapsackSampling | Generate Feasible Samples of a Knapsack Problem |
knitcitations | Citations for 'Knitr' Markdown Files |
knitLatex | 'Knitr' Helpers - Mostly Tables |
knitr | A General-Purpose Package for Dynamic Report Generation in R |
knitrBootstrap | 'knitr' Bootstrap Framework |
knitrProgressBar | Provides Progress Bars in 'knitr' |
knncat | Nearest-neighbor Classification with Categorical Variables |
knnGarden | Multi-distance based k-Nearest Neighbors |
knnIndep | Independence tests and benchmarks |
knnp | Time Series Prediction using K-Nearest Neighbors Algorithm (Parallel) |
knockoff | The Knockoff Filter for Controlled Variable Selection |
Knoema | Interface to the Knoema API |
knor | Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means |
knotR | Knot Diagrams using Bezier Curves |
KnowBR | Discriminating Well Surveyed Spatial Units from Exhaustive Biodiversity Databases |
kntnr | R Client for 'kintone' API |
KODAMA | Knowledge Discovery by Accuracy Maximization |
kofnGA | A Genetic Algorithm for Fixed-Size Subset Selection |
KOGMWU | Functional Summary and Meta-Analysis of Gene Expression Data |
kohonen | Supervised and Unsupervised Self-Organising Maps |
kokudosuuchi | R Interface to 'Kokudo Suuchi' API |
kolmim | An Improved Evaluation of Kolmogorov's Distribution |
komadown | R Markdown Templates for the 'KOMA-Script' Classes |
komaletter | Simple yet Flexible Letters via the 'KOMA-Script LaTeX Bundle' |
konfound | Quantify the Robustness of Causal Inferences |
KoNLP | Korean NLP Package |
koRpus | An R Package for Text Analysis |
koRpus.lang.en | Language Support for 'koRpus' Package: English |
KoulMde | Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm |
Kpart | Cubic Spline Fitting with Knot Selection |
kpcalg | Kernel PC Algorithm for Causal Structure Detection |
kpeaks | Determination of K Using Peak Counts of Features for Clustering |
kpmt | Known Population Median Test |
kpodclustr | Method for Clustering Partially Observed Data |
KraljicMatrix | A Quantified Implementation of the Kraljic Matrix |
kriens | Continuation Passing Style Development |
KRIG | Spatial Statistic with Kriging |
krige | Geospatial Kriging with Metropolis Sampling |
kriging | Ordinary Kriging |
KrigInv | Kriging-Based Inversion for Deterministic and Noisy Computer Experiments |
KRIS | Keen and Reliable Interface Subroutines for Bioinformatic Analysis |
KRLS | Kernel-Based Regularized Least Squares |
krm | Kernel Based Regression Models |
KRMM | Kernel Ridge Mixed Model |
ks | Kernel Smoothing |
kSamples | K-Sample Rank Tests and their Combinations |
kscons | A Bayesian Approach for Protein Residue Contact Prediction using the Knob-Socket Model of Protein Tertiary Structure |
KScorrect | Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Tests |
KSD | Goodness-of-Fit Tests using Kernelized Stein Discrepancy |
KSEAapp | Kinase-Substrate Enrichment Analysis |
kselection | Selection of K in K-Means Clustering |
KSgeneral | Computing P-Values of the K-S Test for (Dis)Continuous Null Distribution |
KSPM | Kernel Semi-Parametric Models |
ksrlive | Identify Kinase Substrate Relationships Using Dynamic Data |
kst | Knowledge Space Theory |
kstIO | Knowledge Space Theory Input/Output |
kstMatrix | Basic Functions in Knowledge Space Theory Using Matrix Representation |
KTensorGraphs | Co-Tucker3 Analysis of Two Sequences of Matrices |
ktsolve | Configurable Function for Solving Families of Nonlinear Equations |
ktspair | k-Top Scoring Pairs for Microarray Classification |
kuiper.2samp | Two-Sample Kuiper Test |
kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |
kutils | Project Management Tools |
kvh | Read/Write Files in Key-Value-Hierarchy Format |
kwb.hantush | Calculation of Groundwater Mounding Beneath an Infiltration Basin |
kyotil | Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies |
kza | Kolmogorov-Zurbenko Adaptive Filters |
kzfs | Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals |
kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |
kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |
l0ara | Sparse Generalized Linear Model with L0 Approximation for Feature Selection |
L0Learn | Fast Algorithms for Best Subset Selection |
l1kdeconv | Deconvolution for LINCS L1000 Data |
L1pack | Routines for L1 Estimation |
l2boost | Friedman's Boosting Algorithm for Regularized Linear Regression |
labdsv | Ordination and Multivariate Analysis for Ecology |
label.switching | Relabelling MCMC Outputs of Mixture Models |
labeledLoop | Labeled Loop |
labeling | Axis Labeling |
labelled | Manipulating Labelled Data |
labelrank | Predicting Rankings of Labels |
labelVector | Label Attributes for Atomic Vectors |
LabourMarketAreas | Identification, Tuning, Visualisation and Analysis of Labour Market Areas |
LabRS | Laboratorio di "Ricerca Sociale con R" |
labstatR | Libreria Del Laboratorio Di Statistica Con R |
labstats | Data Sets for the Book "Experimental Design for Laboratory Biologists" |
lacm | Latent Autoregressive Count Models |
LadR | Routines for Fit, Inference and Diagnostics in LAD Models |
laeken | Estimation of Indicators on Social Exclusion and Poverty |
laercio | Duncan test, Tukey test and Scott-Knott test |
LaF | Fast Access to Large ASCII Files |
lagged | Classes and Methods for Lagged Objects |
LAGOSNE | Interface to the Lake Multi-Scaled Geospatial and Temporal Database |
laGP | Local Approximate Gaussian Process Regression |
lagsarlmtree | Spatial Lag Model Trees |
Lahman | Sean 'Lahman' Baseball Database |
LakeMetabolizer | Tools for the Analysis of Ecosystem Metabolism |
lakemorpho | Lake Morphometry Metrics |
laketemps | Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 |
LAM | Some Latent Variable Models |
lambda.r | Modeling Data with Functional Programming |
lambda.tools | Tools for Modeling Data with Functional Programming |
Lambda4 | Collection of Internal Consistency Reliability Coefficients |
LambertW | Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data |
lamme | Log-Analytic Methods for Multiplicative Effects |
lamW | Lambert-W Function |
LANDD | Liquid Association for Network Dynamics Detection |
landest | Landmark Estimation of Survival and Treatment Effect |
landpred | Landmark Prediction of a Survival Outcome |
landsat | Radiometric and topographic correction of satellite imagery |
landsat8 | Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature |
landscapemetrics | Landscape Metrics for Categorical Map Patterns |
landscapeR | Categorical Landscape Simulation Facility |
landscapetools | Landscape Utility Toolbox |
landsepi | Landscape Epidemiology and Evolution |
Langevin | Langevin Analysis in One and Two Dimensions |
languagelayeR | Access the 'languagelayer' API |
languageR | Analyzing Linguistic Data: A Practical Introduction to Statistics |
languageserver | Language Server Protocol |
lans2r | Work with Look at NanoSIMS Data in R |
LaplaceDeconv | Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval |
LaplacesDemon | Complete Environment for Bayesian Inference |
lar | History of labour relations package |
LARF | Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |
largeList | Serialization Interface for Large List Objects |
lars | Least Angle Regression, Lasso and Forward Stagewise |
lass0 | Lasso-Zero for (High-Dimensional) Linear Regression |
lasso2 | L1 Constrained Estimation aka ‘lasso’ |
LassoBacktracking | Modelling Interactions in High-Dimensional Data with Backtracking |
lassopv | Nonparametric P-Value Estimation for Predictors in Lasso |
lassoscore | High-Dimensional Inference with the Penalized Score Test |
lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |
LassoSIR | Sparsed Sliced Inverse Regression via Lasso |
latdiag | Draws Diagrams Useful for Checking Latent Scales |
latentnet | Latent Position and Cluster Models for Statistical Networks |
later | Utilities for Delaying Function Execution |
Laterality | Functions to Calculate Common Laterality Statistics in Primatology |
latex2exp | Use LaTeX Expressions in Plots |
latexpdf | Convert Tables to PDF or PNG |
lattice | Trellis Graphics for R |
latticeDensity | Density Estimation and Nonparametric Regression on Irregular Regions |
LatticeDesign | Lattice-Based Space-Filling Designs |
latticeExtra | Extra Graphical Utilities Based on Lattice |
LatticeKrig | Multiresolution Kriging Based on Markov Random Fields |
lava | Latent Variable Models |
lava.tobit | Latent Variable Models with Censored and Binary Outcomes |
lavaan | Latent Variable Analysis |
lavaan.shiny | Latent Variable Analysis with Shiny |
lavaan.survey | Complex Survey Structural Equation Modeling (SEM) |
lavaanPlot | Path Diagrams for Lavaan Models via DiagrammeR |
lavaSearch2 | Tools for Model Specification in the Latent Variable Framework |
Lavash | Lava Estimation for the Sum of Sparse and Dense Signals |
lawn | Client for 'Turfjs' for 'Geospatial' Analysis |
lawstat | Tools for Biostatistics, Public Policy, and Law |
lazy | Lazy Learning for Local Regression |
lazyData | A LazyData Facility |
lazyeval | Lazy (Non-Standard) Evaluation |
lazyrmd | Render R Markdown Outputs Lazily |
lazysql | Lazy SQL Programming |
lazyWeave | LaTeX Wrappers for R Users |
lba | Latent Budget Analysis for Compositional Data |
lbfgs | Limited-memory BFGS Optimization |
lbfgsb3 | Limited Memory BFGS Minimizer with Bounds on Parameters |
lbfgsb3c | Limited Memory BFGS Minimizer with Bounds on Parameters with optim() 'C' Interface |
lbiassurv | Length-biased correction to survival curve estimation |
lbreg | Log-Binomial Regression with Constrained Optimization |
LBSPR | Length-Based Spawning Potential Ratio |
LCA | Localised Co-Dependency Analysis |
LCAextend | Latent Class Analysis (LCA) with Familial Dependence in Extended Pedigrees |
LCAvarsel | Variable Selection for Latent Class Analysis |
lcc | Longitudinal Concordance Correlation |
lcda | Latent Class Discriminant Analysis |
LCF | Linear Combination Fitting |
LCFdata | Data sets for package “LMERConvenienceFunctions” |
lclGWAS | Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data |
LCMCR | Bayesian Non-Parametric Latent-Class Capture-Recapture |
lcmm | Extended Mixed Models Using Latent Classes and Latent Processes |
lcopula | Liouville Copulas |
LCox | A Tool for Selecting Genes Related to Survival Outcomes using Longitudinal Gene Expression Data |
lcpm | Ordinal Outcomes: Generalized Linear Models with the Log Link |
lctools | Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools |
lcyanalysis | Stock Data Analysis Functions |
lda | Collapsed Gibbs Sampling Methods for Topic Models |
ldamatch | Selection of Statistically Similar Research Groups |
ldat | Large Data Sets |
ldatuning | Tuning of the Latent Dirichlet Allocation Models Parameters |
LDAvis | Interactive Visualization of Topic Models |
ldbod | Local Density-Based Outlier Detection |
ldbounds | Lan-DeMets Method for Group Sequential Boundaries |
LDcorSV | Linkage Disequilibrium Corrected by the Structure and the Relatedness |
LDheatmap | Graphical Display of Pairwise Linkage Disequilibria Between SNPs |
ldhmm | Hidden Markov Model for Financial Time-Series Based on Lambda Distribution |
LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |
LDPD | Probability of Default Calibration |
ldr | Methods for likelihood-based dimension reduction in regression |
LDRTools | Tools for Linear Dimension Reduction |
LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |
leabRa | The Artificial Neural Networks Algorithm Leabra |
leaderCluster | Leader Clustering Algorithm |
LeafArea | Rapid Digital Image Analysis of Leaf Area |
leaflet | Create Interactive Web Maps with the JavaScript 'Leaflet' Library |
leaflet.esri | 'ESRI' Bindings for the 'leaflet' Package |
leaflet.extras | Extra Functionality for 'leaflet' Package |
leaflet.minicharts | Mini Charts for Interactive Maps |
leaflet.opacity | Opacity Controls for Leaflet Maps |
leafletCN | An R Gallery for China and Other Geojson Choropleth Map in Leaflet |
leafletR | Interactive Web-Maps Based on the Leaflet JavaScript Library |
leafSTAR | Silhouette to Area Ratio of Tilted Surfaces |
leanpubr | 'Leanpub' API Interface |
LEANR | Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes |
LEAP | Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering |
LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |
leapp | latent effect adjustment after primary projection |
leaps | Regression Subset Selection |
LeArEst | Border and Area Estimation of Data Measured with Additive Error |
LearnBayes | Functions for Learning Bayesian Inference |
LearnGeom | Learning Plane Geometry |
learningCurve | An Implementation of Crawford's and Wright's Learning Curve Production Functions |
learningr | Data and functions to accompany the book "Learning R" |
LearningRlab | Statistical Learning Functions |
learNN | Examples of Neural Networks |
learnPopGen | Population Genetic Simulations & Numerical Analysis |
learnr | Interactive Tutorials for R |
learnrbook | Datasets for Aphalo's "Learn R" Book |
learnstats | An Interactive Environment for Learning Statistics |
ledger | Utilities for Importing Data from Plain Text Accounting Files |
leerSIECyL | Read Data from the SIE |
lefse | Phylogenetic and Functional Analyses for Ecology |
LEGIT | Latent Environmental & Genetic InTeraction (LEGIT) Model |
leiden | Implementation of the 'Python leidenalg' Module |
leiv | Bivariate Linear Errors-In-Variables Estimation |
LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (French) |
lemon | Freshing Up your 'ggplot2' Plots |
LendingClub | A Lending Club API Wrapper |
lero.lero | Generate 'Lero Lero' Quotes |
lessR | Less Code, More Results |
lest | Vectorised Nested if-else Statements Similar to CASE WHEN in 'SQL' |
lestat | A Package for Learning Statistics |
letsR | Tools for Data Handling and Analysis in Macroecology |
lettercase | Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space |
lexicon | Lexicons for Text Analysis |
lexiconPT | Lexicons for Portuguese Text Analysis |
LexisNexisTools | Working with Files from 'LexisNexis' |
LexisPlotR | Plot Lexis Diagrams for Demographic Purposes |
lexRankr | Extractive Summarization of Text with the LexRank Algorithm |
lfactors | Factors with Levels |
lfda | Local Fisher Discriminant Analysis |
LFDR.MLE | Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation |
LFDREmpiricalBayes | Estimating Local False Discovery Rates Using Empirical Bayes Methods |
lfe | Linear Group Fixed Effects |
lfl | Linguistic Fuzzy Logic |
lfstat | Calculation of Low Flow Statistics for Daily Stream Flow Data |
lg | Locally Gaussian Distributions: Estimation and Methods |
lga | Tools for linear grouping analysis (LGA) |
lgarch | Simulation and Estimation of Log-GARCH Models |
lgcp | Log-Gaussian Cox Process |
LGEWIS | Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Studies |
LGRF | Set-Based Tests for Genetic Association in Longitudinal Studies |
lgtdl | A Set of Methods for Longitudinal Data Objects |
lhmixr | Fit Sex-Specific Life History Models with Missing Classifications |
lhs | Latin Hypercube Samples |
liayson | Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes |
libamtrack | Computational Routines for Proton and Ion Radiotherapy |
libcoin | Linear Test Statistics for Permutation Inference |
LiblineaR | Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library |
LiblineaR.ACF | Linear Classification with Online Adaptation of Coordinate Frequencies |
Libra | Linearized Bregman Algorithms for Generalized Linear Models |
librarian | Install, Update, Load Packages from CRAN, 'GitHub', and 'Bioconductor' in One Step |
librarysnapshot | Library Snapshot for Packages and Dependencies in Use by Current Session |
libsoc | Read, Create and Write 'PharmML' Standard Output (so) XML Files |
libstableR | Fast and Accurate Evaluation, Random Number Generation and Parameter Estimation of Skew Stable Distributions |
LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |
lidR | Airborne LiDAR Data Manipulation and Visualization for Forestry Applications |
lifecontingencies | Financial and Actuarial Mathematics for Life Contingencies |
lifecourse | Quantification of Lifecourse Fluidity |
LifeHist | Life History Models of Individuals |
lifelogr | Life Logging |
LifeTables | Two-Parameter HMD Model Life Table System |
lift | Compute the Top Decile Lift and Plot the Lift Curve |
liftLRD | Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series |
liftr | Containerize R Markdown Documents for Continuous Reproducibility |
liger | Lightweight Iterative Geneset Enrichment |
LightningR | Tools for Communication with Lightning-Viz Server |
lightsout | Implementation of the 'Lights Out' Puzzle Game |
LIHNPSD | Poisson Subordinated Distribution |
likelihood | Methods for Maximum Likelihood Estimation |
likelihoodAsy | Functions for Likelihood Asymptotics |
likelihoodExplore | Likelihood Exploration |
likeLTD | Tools to Evaluate DNA Profile Evidence |
likert | Analysis and Visualization Likert Items |
lilikoi | Metabolomics Personalized Pathway Analysis Tool |
LIM | Linear Inverse Model examples and solution methods |
lime | Local Interpretable Model-Agnostic Explanations |
limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |
limSolve | Solving Linear Inverse Models |
lin.eval | Perform Polynomial Evaluation of Linearity |
linbin | Binning and Plotting of Linearly Referenced Data |
LinCal | Static Univariate Frequentist and Bayesian Linear Calibration |
LindenmayeR | Functions to Explore L-Systems (Lindenmayer Systems) |
lindia | Automated Linear Regression Diagnostic |
LindleyPowerSeries | Lindley Power Series Distribution |
LindleyR | The Lindley Distribution and Its Modifications |
linear.tools | Manipulate Formulas and Evaluate Marginal Effects |
linearQ | Linear Algorithm for Simulating Quantiles in Multiscale Change-Point Segmentation Problem |
LinearRegressionMDE | Minimum Distance Estimation in Linear Regression Model |
linemap | Line Maps |
lineqGPR | Gaussian Process Regression Models with Linear Inequality Constraints |
linERR | Linear Excess Relative Risk Model |
lineup | Lining Up Two Sets of Measurements |
lingtypology | Linguistic Typology and Mapping |
linguisticsdown | Easy Linguistics Document Writing with R Markdown |
link2GI | Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools |
LinkageMapView | Plot Linkage Group Maps with Quantitative Trait Loci |
linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |
LinkedGASP | Linked Emulator of a Coupled System of Simulators |
LinkedMatrix | Column-Linked and Row-Linked Matrices |
linkim | Linkage information based genotype imputation method |
linkprediction | Link Prediction Methods |
linkR | 3D Lever and Linkage Mechanism Modeling |
linkspotter | Bivariate Correlations Calculation and Visualization |
linl | 'linl' is not 'Letter' |
linLIR | linear Likelihood-based Imprecise Regression |
linpk | Generate Concentration-Time Profiles from Linear PK Systems |
linprog | Linear Programming / Optimization |
LinRegInteractive | Interactive Interpretation of Linear Regression Models |
LINselect | Selection of Linear Estimators |
lintools | Manipulation of Linear Systems of (in)Equalities |
lintr | A 'Linter' for R Code |
LipidMS | Lipid Annotation for LC-MS/MS DIA Data |
liqueueR | Implements Queue, PriorityQueue and Stack Classes |
liquidSVM | A Fast and Versatile SVM Package |
lira | LInear Regression in Astronomy |
lisp | List-processing à la SRFI-1 |
lisrelToR | Import output from LISREL into R |
list | Statistical Methods for the Item Count Technique and List Experiment |
listarrays | A Toolbox for Working with R Arrays in a Functional Programming Style |
listdtr | List-Based Rules for Dynamic Treatment Regimes |
listenv | Environments Behaving (Almost) as Lists |
LIStest | Tests of independence based on the Longest Increasing Subsequence |
listless | Convert Lists to Tidy Data Frames |
listviewer | 'htmlwidget' for Interactive Views of R Lists |
listWithDefaults | List with Defaults |
liteq | Lightweight Portable Message Queue Using 'SQLite' |
littler | R at the Command-Line via 'r' |
liureg | Liu Regression with Liu Biasing Parameters and Statistics |
live | Local Interpretable (Model-Agnostic) Visual Explanations |
livechatR | R Wrapper for LiveChat REST API |
ljr | Logistic Joinpoint Regression |
llama | Leveraging Learning to Automatically Manage Algorithms |
lle | Locally linear embedding |
lllcrc | Local Log-linear Models for Capture-Recapture |
LLM | Logit Leaf Model Classifier for Binary Classification |
llogistic | The L-Logistic Distribution |
LLSR | Data Analysis of Liquid-Liquid Systems |
lm.beta | Add Standardized Regression Coefficients to lm-Objects |
lm.br | Linear Model with Breakpoint |
lme4 | Linear Mixed-Effects Models using 'Eigen' and S4 |
lmec | Linear Mixed-Effects Models with Censored Responses |
lmem.qtler | Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis |
lmeNB | Compute the Personalized Activity Index Based on a Negative Binomial Model |
lmeNBBayes | Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model |
lmenssp | Linear Mixed Effects Models with Non-Stationary Stochastic Processes |
LMERConvenienceFunctions | Model Selection and Post-hoc Analysis for (G)LMER Models |
lmeresampler | Bootstrap Methods for Nested Linear Mixed-Effects Models |
lmerTest | Tests in Linear Mixed Effects Models |
lmeSplines | Add smoothing spline modelling capability to nlme |
LMest | Latent Markov Models with and without Covariates |
lmeVarComp | Testing for a Subset of Variance Components in Linear Mixed Models |
lmf | Functions for estimation and inference of selection in age-structured populations |
LMfilteR | Filter Methods for Parameter Estimation in Linear Regression Models |
lmfor | Functions for Forest Biometrics |
lmm | Linear Mixed Models |
lmmen | Linear Mixed Model Elastic Net |
lmmlasso | Linear mixed-effects models with Lasso |
lmmot | Multiple Ordinal Tobit (MOT) Model |
lmmpar | Parallel Linear Mixed Model |
lmms | Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data |
lmodel2 | Model II Regression |
lmom | L-Moments |
lmomco | L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions |
Lmoments | L-Moments and Quantile Mixtures |
lmomPi | (Precipitation) Frequency Analysis and Variability with L-Moments from 'lmom' |
lmomRFA | Regional Frequency Analysis using L-Moments |
lmPerm | Permutation Tests for Linear Models |
lmQCM | An Algorithm for Gene Co-Expression Analysis |
lmreg | Data and Functions Used in Linear Models and Regression with R: An Integrated Approach |
lmridge | Linear Ridge Regression with Ridge Penalty and Ridge Statistics |
lmSubsets | Exact Variable-Subset Selection in Linear Regression |
lmSupport | Support for Linear Models |
lmtest | Testing Linear Regression Models |
lmvar | Linear Regression with Non-Constant Variances |
lmviz | A Package to Visualize Linear Models Features and Play with Them |
LN0SCIs | Simultaneous CIs for Ratios of Means of Log-Normal Populations with Zeros |
LncFinder | LncRNA Identification and Analysis Using Heterologous Features |
LncMod | Predicting Modulator and Functional/Survival Analysis |
LncPath | Identifying the Pathways Regulated by LncRNA Sets of Interest |
LNIRT | LogNormal Response Time Item Response Theory Models |
loa | Lattice Options and Add-Ins |
lobstr | Visualize R Data Structures with Trees |
LocalControl | Nonparametric Methods for Generating High Quality Comparative Effectiveness Evidence |
LocalControlStrategy | Local Control Strategy for Robust Analysis of Cross-Sectional Data |
localgauss | Estimating Local Gaussian Parameters |
localICE | Local Individual Conditional Expectation |
localIV | Estimation of Marginal Treatment Effects using Local Instrumental Variables |
localsolver | R API to LocalSolver |
locfdr | Computes Local False Discovery Rates |
LocFDRPois | Functions for Performing Local FDR Estimation when Null and Alternative are Poisson |
locfit | Local Regression, Likelihood and Density Estimation |
locits | Test of Stationarity and Localized Autocovariance |
Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |
Lock5withR | Datasets for 'Statistics: Unlocking the Power of Data' |
locpol | Kernel Local Polynomial Regression |
loder | Dependency-Free Access to PNG Image Files |
lodGWAS | Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection |
loe | Local Ordinal Embedding |
log4r | A simple logging system for R, based on log4j |
logbin | Relative Risk Regression Using the Log-Binomial Model |
LogConcDEAD | Log-Concave Density Estimation in Arbitrary Dimensions |
logconcens | Maximum likelihood estimation of a log-concave density based on censored data |
logcondens | Estimate a Log-Concave Probability Density from Iid Observations |
logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |
logcondiscr | Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations |
logger | A Lightweight, Modern and Flexible Logging Utility |
logging | R Logging Package |
loggit | Effortless Exception Logging |
loggle | Local Group Graphical Lasso Estimation |
logiBin | Binning Variables to Use in Logistic Regression |
LOGICOIL | LOGICOIL: multi-state prediction of coiled-coil oligomeric state |
LogicReg | Logic Regression |
logihist | Combined Graphs for Logistic Regression |
logistf | Firth's Bias-Reduced Logistic Regression |
logistic4p | Logistic Regression with Misclassification in Dependent Variables |
LogisticDx | Diagnostic Tests for Models with a Binomial Response |
logisticPCA | Binary Dimensionality Reduction |
logisticRR | Adjusted Relative Risk from Logistic Regression |
logitchoice | Fitting l2-regularized logit choice models via generalized gradient descent |
LogitNet | Infer network based on binary arrays using regularized logistic regression |
logitnorm | Functions for the Logitnormal Distribution |
logKDE | Computing Log-Transformed Kernel Density Estimates for Positive Data |
loglognorm | Double log normal distribution functions |
logmult | Log-Multiplicative Models, Including Association Models |
lognorm | Functions for the Lognormal Distribution |
logNormReg | log Normal Linear Regression |
logOfGamma | Natural Logarithms of the Gamma Function for Large Values |
LogrankA | Logrank Test for Aggregated Survival Data |
logspline | Routines for Logspline Density Estimation |
lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |
lolog | Latent Order Logistic Graph Models |
lolR | Linear Optimal Low-Rank Projection |
lomb | Lomb-Scargle Periodogram |
longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |
longclust | Model-Based Clustering and Classification for Longitudinal Data |
longitudinal | Analysis of Multiple Time Course Data |
longitudinalcascade | Longitudinal Cascade |
longitudinalData | Longitudinal Data |
longmemo | Statistics for Long-Memory Processes (Book Jan Beran), and Related Functionality |
LongMemoryTS | Long Memory Time Series |
longROC | Time-Dependent Prognostic Accuracy with Multiply Evaluated Bio Markers or Scores |
longRPart2 | Recursive Partitioning of Longitudinal Data |
longurl | Expand Short URLs |
loo | Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |
lookupTable | Look-Up Tables using S4 |
loon | Interactive Statistical Data Visualization |
loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |
LoopAnalyst | A Collection of Tools to Conduct Levins' Loop Analysis |
loopr | Uses an Archive to Amend Previous Stages of a Pipe using Current Output |
loose.rock | Set of Functions to Use in Survival Analysis and in Data Science |
lordif | Logistic Ordinal Regression Differential Item Functioning using IRT |
lorec | LOw Rand and sparsE Covariance matrix estimation |
lorentz | The Lorentz Transform in Relativistic Physics |
lori | Low-Rank Interactions in Count Data with Covariates |
LOST | Missing Morphometric Data Simulation and Estimation |
LotkasLaw | Runs Lotka's Law which is One of the Special Applications of Zipf's Law |
lowmemtkmeans | Low Memory Use Trimmed K-Means |
LowRankQP | Low Rank Quadratic Programming |
LowWAFOMNX | Low WAFOM Niederreiter-Xing Sequence |
LowWAFOMSobol | Low WAFOM Sobol Sequence |
lpbrim | LP-BRIM Bipartite Modularity |
lpc | Lassoed Principal Components for Testing Significance of Features |
LPCM | Local Principal Curve Methods |
lpdensity | Local Polynomial Density Estimation and Inference |
LPGraph | Nonparametric Smoothing of Laplacian Graph Spectra |
lpint | Local polynomial estimators of intensity function or its derivatives |
lpirfs | Local Projections Impulse Response Functions |
LPKsample | LP Nonparametric High Dimensional K-Sample Comparison |
lplyr | 'dplyr' Verbs for Lists and Other Verbs for Data Frames |
LPM | Linear Parametric Models Applied to Hydrological Series |
lpme | Nonparametric Estimation of Measurement Error Models |
LPmerge | Merging Linkage Maps by Linear Programming |
lpmodeler | Modeler for linear programs (LP) and mixed integer linear programs (MILP) |
LPower | Calculates Power, Sample Size, or Detectable Effect for Longitudinal Analyses |
lpridge | Local Polynomial (Ridge) Regression |
LPS | Linear Predictor Score, for Binary Inference from Multiple Continuous Variables |
lpSolve | Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |
lpSolveAPI | R Interface to 'lp_solve' Version 5.5.2.0 |
LPStimeSeries | Learned Pattern Similarity and Representation for Time Series |
LPTime | LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling |
LPWC | Lag Penalized Weighted Correlation for Time Series Clustering |
lqmm | Linear Quantile Mixed Models |
lqr | Robust Linear Quantile Regression |
LRcontrast | Dose Response Signal Detection under Model Uncertainty |
lrequire | Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars |
lrgs | Linear Regression by Gibbs Sampling |
lrmest | Different Types of Estimators to Deal with Multicollinearity |
LRTH | A Likelihood Ratio Test Accounting for Genetic Heterogeneity |
LS2W | Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme |
LS2Wstat | A Multiscale Test of Spatial Stationarity for LS2W Processes |
lsa | Latent Semantic Analysis |
LSAfun | Applied Latent Semantic Analysis (LSA) Functions |
LSAmitR | Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit R' |
lsasim | Functions to Facilitate the Simulation of Large Scale Assessment Data |
lsbclust | Least-Squares Bilinear Clustering for Three-Way Data |
lsbs | Bandwidth Selection for Level Sets and HDR Estimation |
LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |
LSD | Lots of Superior Depictions |
LSDinterface | Reading LSD Results (.res) Files |
LSDsensitivity | Sensitivity Analysis Tools for LSD |
lsdv | Least square dummy variable regression |
lsei | Solving Least Squares or Quadratic Programming Problems under Equality/Inequality Constraints |
lshorth | The Length of the Shorth |
lsl | Latent Structure Learning |
lslx | Semi-Confirmatory Structural Equation Modeling via Penalized Likelihood |
lsm | Estimation of the log Likelihood of the Saturated Model |
lsmeans | Least-Squares Means |
LSMonteCarlo | American options pricing with Least Squares Monte Carlo method |
lspartition | Nonparametric Estimation and Inference Procedures using Partitioning-Based Least Squares Regression |
LSPFP | Lysate and Secretome Peptide Feature Plotter |
lspline | Linear Splines with Convenient Parametrisations |
lspls | LS-PLS Models |
lsplsGlm | Classification using LS-PLS for Logistic Regression |
lsr | Companion to "Learning Statistics with R" |
LSRS | Land Surface Remote Sensing |
LSTS | Locally Stationary Time Series |
ltable | Easy to Make (Lazy) Tables |
ltbayes | Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |
ltm | Latent Trait Models under IRT |
ltmle | Longitudinal Targeted Maximum Likelihood Estimation |
LTPDvar | LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables |
LTR | Perform LTR analysis on microarray data |
LTRCtrees | Survival Trees to Fit Left-Truncated and Right-Censored and Interval-Censored Survival Data |
ltsa | Linear Time Series Analysis |
ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |
ltsk | Local Time Space Kriging |
ltxsparklines | Lightweight Sparklines for a LaTeX Document |
lubridate | Make Dealing with Dates a Little Easier |
lucid | Printing Floating Point Numbers in a Human-Friendly Format |
LUCIDus | Latent Unknown Clustering with Integrated Data |
lucr | Currency Formatting and Conversion |
ludic | Linkage Using Diagnosis Codes |
lue | Light Use Efficiency Model to Estimate Biomass and YIELD with and Without Vapour Pressure Deficit |
lulcc | Land Use Change Modelling in R |
lumberjack | Track Changes in Data |
Luminescence | Comprehensive Luminescence Dating Data Analysis |
lunar | Lunar Phase & Distance, Seasons and Other Environmental Factors |
lutz | Look Up Time Zones of Point Coordinates |
luzlogr | Lightweight Logging for R Scripts |
lvec | Out of Memory Vectors |
LVGP | Latent Variable Gaussian Process Modeling with Qualitative and Quantitative Input Variables |
lvm4net | Latent Variable Models for Networks |
lvmcomp | Stochastic EM Algorithms for Latent Variable Models with a High-Dimensional Latent Space |
lvnet | Latent Variable Network Modeling |
lvplot | Letter Value 'Boxplots' |
LW1949 | An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949) |
lwgeom | Bindings to Selected 'liblwgeom' Functions for Simple Features |
lxb | Fast LXB File Reader |
lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |
LZeroSpikeInference | Exact Spike Train Inference via L0 Optimization |
m2b | Movement to Behaviour Inference using Random Forest |
m2r | Macaulay2 in R |
M2SMF | Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis |
M3 | Reading M3 files |
mable | Maximum Approximate Bernstein Likelihood Estimation |
maboost | Binary and Multiclass Boosting Algorithms |
MAc | Meta-Analysis with Correlations |
macc | Mediation Analysis of Causality under Confounding |
machina | Machina Time Series Generation and Backtesting |
MachineLearning | Machine Learning Algorithms for Innovation in Tourism |
MachineShop | Machine Learning Models and Tools |
machQA | QA Machina Indicators |
macleish | Retrieve Data from MacLeish Field Station |
MAclinical | Class prediction based on microarray data and clinical parameters |
MAd | Meta-Analysis with Mean Differences |
mada | Meta-Analysis of Diagnostic Accuracy |
maddison | Maddison Project Database |
maditr | Pipe-Style Interface for 'data.table' |
madness | Automatic Differentiation of Multivariate Operations |
MADPop | MHC Allele-Based Differencing Between Populations |
madr | Model Averaged Double Robust Estimation |
madrat | May All Data be Reproducible and Transparent (MADRaT) * |
mads | Multi-Analysis Distance Sampling |
madsim | A Flexible Microarray Data Simulation Model |
Maeswrap | Wrapper Functions for MAESTRA/MAESPA |
mafs | Multiple Automatic Forecast Selection |
magclass | Data Class and Tools for Handling Spatial-Temporal Data |
magic | Create and Investigate Magic Squares |
magicaxis | Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support |
magicfor | Magic Functions to Obtain Results from for Loops |
magick | Advanced Graphics and Image-Processing in R |
magicLamp | 'WeMo Switch' Smart Plug Utilities |
MAGNAMWAR | A Pipeline for Meta-Genome Wide Association |
magree | Implements the O'Connell-Dobson-Schouten Estimators of Agreement for Multiple Observers |
magrittr | A Forward-Pipe Operator for R |
Sending Email Notifications from R | |
mailR | A Utility to Send Emails from R |
MAINT.Data | Model and Analyse Interval Data |
majesticR | R Interface to Access the 'Majestic' API |
makedummies | Create Dummy Variables from Categorical Data |
MakefileR | Create 'Makefiles' Using R |
makeFlow | Visualizing Sequential Classifications |
makeParallel | Transform Serial R Code into Parallel R Code |
makeProject | Creates an empty package framework for the LCFD format |
malani | Machine Learning Assisted Network Inference |
malariaAtlas | An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project' |
MALDIquant | Quantitative Analysis of Mass Spectrometry Data |
MALDIquantForeign | Import/Export Routines for 'MALDIquant' |
MALDIrppa | MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis |
mallet | A wrapper around the Java machine learning tool MALLET |
MAMS | Designing Multi-Arm Multi-Stage Studies |
MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) Weights |
managelocalrepo | Manage a CRAN-Style Local Repository |
MANCIE | Matrix Analysis and Normalization by Concordant Information Enhancement |
mandelbrot | Generates Views on the Mandelbrot Set |
manet | Multiple Allocation Model for Actor-Event Networks |
mangoTraining | Mango Solutions Training Datasets |
Mangrove | Risk Prediction on Trees |
manhattanly | Interactive Q-Q and Manhattan Plots Using 'plotly.js' |
manifestoR | Access and Process Data and Documents of the Manifesto Project |
ManifoldOptim | An R Interface to the 'ROPTLIB' Library for Riemannian Manifold Optimization |
manipulate | Interactive Plots for RStudio |
manipulateWidget | Add Even More Interactivity to Interactive Charts |
ManlyMix | Manly Mixture Modeling and Model-Based Clustering |
MANOVA.RM | Analysis of Multivariate Data and Repeated Measures Designs |
ManyTests | Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007) |
Map2NCBI | Mapping Markers to the Nearest Genomic Feature |
MAPA | Multiple Aggregation Prediction Algorithm |
mapdata | Extra Map Databases |
mapdeck | Interactive Maps Using 'Mapbox GL JS' and 'Deck.gl' |
mapedit | Interactive Editing of Spatial Data in R |
mapfit | A Tool for PH/MAP Parameter Estimation |
MapGAM | Mapping Smoothed Effect Estimates from Individual-Level Data |
mapi | Mapping Averaged Pairwise Information |
MAPLES | Smoothed age profile estimation |
mapmisc | Utilities for Producing Maps |
mapplots | Data Visualisation on Maps |
mapproj | Map Projections |
mapr | Visualize Species Occurrence Data |
mapReasy | Producing Administrative Boundary Map with Additional Features Embedded |
maps | Draw Geographical Maps |
mapsapi | 'sf'-Compatible Interface to 'Google Maps' APIs |
mapsRinteractive | Local Adaptation and Evaluation of Digital Soil Maps |
mapStats | Geographic Display of Survey Data Statistics |
maptools | Tools for Handling Spatial Objects |
maptpx | MAP Estimation of Topic Models |
maptree | Mapping, pruning, and graphing tree models |
mapview | Interactive Viewing of Spatial Data in R |
mAr | Multivariate AutoRegressive analysis |
mar1s | Multiplicative AR(1) with Seasonal Processes |
march | Markov Chains |
marcher | Migration and Range Change Estimation in R |
marelac | Tools for Aquatic Sciences |
MareyMap | Estimation of Meiotic Recombination Rates Using Marey Maps |
marg | Approximate Marginal Inference for Regression-Scale Models |
MargCond | Joint Marginal-Conditional Model |
MarginalMediation | Marginal Mediation |
margins | Marginal Effects for Model Objects |
marima | Multivariate ARIMA and ARIMA-X Analysis |
marinespeed | Benchmark Data Sets and Functions for Marine Species Distribution Modelling |
markdown | 'Markdown' Rendering for R |
marked | Mark-Recapture Analysis for Survival and Abundance Estimation |
MarketMatching | Market Matching and Causal Impact Inference |
markmyassignment | Automatic Marking of R Assignments |
markophylo | Markov Chain Models for Phylogenetic Trees |
markovchain | Easy Handling Discrete Time Markov Chains |
MarkowitzR | Statistical Significance of the Markowitz Portfolio |
marl | Multivariate Analysis Based on Relative Likelihoods |
marmap | Import, Plot and Analyze Bathymetric and Topographic Data |
marqLevAlg | An algorithm for least-squares curve fitting |
MARSS | Multivariate Autoregressive State-Space Modeling |
MARX | Simulation, Estimation, Model Selection and Forecasting for MARX Models |
maSAE | Mandallaz' Model-Assisted Small Area Estimators |
mase | Model-Assisted Survey Estimators |
MaskJointDensity | Masking, Unmasking and Restoring Confidential Data |
mason | Build Data Structures for Common Statistical Analysis |
MASS | Support Functions and Datasets for Venables and Ripley's MASS |
Massign | Simple Matrix Construction |
MASSTIMATE | Body Mass Estimation Equations for Vertebrates |
MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |
MAT | Multidimensional Adaptive Testing |
MATA | Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval |
matchbook | Wrapper for the 'Matchbook' API |
Matching | Multivariate and Propensity Score Matching with Balance Optimization |
MatchingFrontier | Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference |
matchingMarkets | Analysis of Stable Matchings |
matchingR | Matching Algorithms in R and C++ |
MatchIt | Nonparametric Preprocessing for Parametric Causal Inference |
MatchLinReg | Combining Matching and Linear Regression for Causal Inference |
matchMulti | Optimal Multilevel Matching using a Network Algorithm |
matconv | A Code Converter from the Matlab/Octave Language to R |
mateable | Tools to Assess Mating Potential in Space and Time |
mathgraph | Directed and Undirected Graphs |
mathpix | Support for the 'Mathpix' API (Image to 'LaTeX') |
matie | Measuring Association and Testing Independence Efficiently |
matlab | MATLAB emulation package |
matlabr | An Interface for MATLAB using System Calls |
matlib | Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics |
MatManlyMix | Matrix Clustering with Gaussian and Manly Mixture Models |
matpow | matrix powers |
matR | Metagenomics Analysis Tools |
Matrix | Sparse and Dense Matrix Classes and Methods |
Matrix.utils | Data.frame-Like Operations on Sparse and Dense Matrix Objects |
matrixcalc | Collection of functions for matrix calculations |
MatrixCorrelation | Matrix Correlation Coefficients |
MatrixEQTL | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
matrixLaplacian | Normalized Laplacian Matrix and Laplacian Map |
MatrixLDA | Penalized Matrix-Normal Linear Discriminant Analysis |
MatrixModels | Modelling with Sparse And Dense Matrices |
matrixNormal | The Matrix Normal Distribution |
matrixpls | Matrix-Based Partial Least Squares Estimation |
matrixProfile | Matrix Profile |
matrixsampling | Simulations of Matrix Variate Distributions |
matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) |
matrixTests | Fast Statistical Hypothesis Tests on Rows and Columns of Matrices |
matsbyname | An Implementation of Matrix Mathematics |
matsindf | Matrices in data frames |
MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |
mau | Decision Models with Multi Attribute Utility Theory |
MAVE | Methods for Dimension Reduction |
MAVIS | Meta Analysis via Shiny |
MAVTgsa | Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest |
MaXact | Exact max-type Cochran-Armitage trend test(CATT) |
maxadjAUC | Maximizing the Adjusted AUC |
maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |
MaxentVariableSelection | Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling |
maximin | Space-Filling Design under Maximin Distance |
maxLik | Maximum Likelihood Estimation and Related Tools |
maxlike | Model Species Distributions by Estimating the Probability of Occurrence Using Presence-Only Data |
maxmatching | Maximum Matching for General Weighted Graph |
maxnet | Fitting 'Maxent' Species Distribution Models with 'glmnet' |
MaxPro | Maximum Projection Designs |
MaxSkew | Orthogonal Data Projections with Maximal Skewness |
maxstat | Maximally Selected Rank Statistics |
maxTPR | Maximizing the TPR for a Specified FPR |
MazamaCoreUtils | Utility Functions for Production R Code |
MazamaSpatialUtils | Spatial Data Download and Utility Functions |
MazamaWebUtils | Utility Functions for Building Web Databrowsers |
mazealls | Generate Recursive Mazes |
mazeGen | Elithorn Maze Generator |
mazeinda | Monotonic Association on Zero-Inflated Data |
MBA | Multilevel B-Spline Approximation |
mbbefd | Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling |
MBC | Multivariate Bias Correction of Climate Model Outputs |
MBCluster.Seq | Model-Based Clustering for RNA-seq Data |
mbclusterwise | Clusterwise Multiblock Analyses |
MBESS | The MBESS R Package |
mbest | Moment-Based Estimation for Hierarchical Models |
mbgraphic | Measure Based Graphic Selection |
MBHdesign | Spatial Designs for Ecological and Environmental Surveys |
MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |
mbir | Magnitude-Based Inferences |
mblm | Median-Based Linear Models |
MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |
mbmdr | Model Based Multifactor Dimensionality Reduction |
mboost | Model-Based Boosting |
mboxr | Converting an Mbox File into a Tibble |
mbrglm | Median Bias Reduction in Binomial-Response GLMs |
MBSGS | Multivariate Bayesian Sparse Group Selection with Spike and Slab |
MBSP | Multivariate Bayesian Model with Shrinkage Priors |
MBTAr | Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API |
mBvs | Bayesian Variable Selection Methods for Multivariate Data |
mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |
MC2toPath | Translates information from netcdf files with MC2 output into inter-PVT transitions |
MCAvariants | Multiple Correspondence Analysis Variants |
mcbiopi | Matrix Computation Based Identification of Prime Implicants |
mcc | Moment Corrected Correlation |
mcca | Multi-Category Classification Accuracy |
mccf1 | Creates the MCC-F1 Curve and Calculates the MCC-F1 Metric and the Best Threshold |
mcclust | Process an MCMC Sample of Clusterings |
mccmeiv | Analysis of Matched Case Control Data with a Mismeasured Exposure that is Accompanied by Instrumental Variables |
mccr | The Matthews Correlation Coefficient |
MCDA | Functions to Support the Multicriteria Decision Aiding Process |
MCDM | Multi-Criteria Decision Making Methods for Crisp Data |
mcemGLM | Maximum Likelihood Estimation for Generalized Linear Mixed Models |
mcen | Multivariate Cluster Elastic Net |
mcga | Machine Coded Genetic Algorithms for Real-Valued Optimization Problems |
mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |
mcGlobaloptim | Global optimization using Monte Carlo and Quasi Monte Carlo simulation |
mcheatmaps | Multiple matrices heatmap visualization |
MCI | Multiplicative Competitive Interaction (MCI) Model |
MCI2 | Market Area Models for Retail and Service Locations |
MCL | Markov Cluster Algorithm |
mclcar | Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods |
mcll | Monte Carlo Local Likelihood Estimation |
mclogit | Mixed Conditional Logit Models |
mclust | Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation |
mclustcomp | Measures for Comparing Clusters |
mcmc | Markov Chain Monte Carlo |
MCMC.OTU | Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology |
MCMC.qpcr | Bayesian Analysis of qRT-PCR Data |
MCMC4Extremes | Posterior Distribution of Extreme Value Models in R |
MCMCglmm | MCMC Generalised Linear Mixed Models |
MCMCpack | Markov Chain Monte Carlo (MCMC) Package |
mcmcplots | Create Plots from MCMC Output |
MCMCprecision | Precision of Discrete Parameters in Transdimensional MCMC |
mcmcr | Manipulate MCMC Samples |
mcmcse | Monte Carlo Standard Errors for MCMC |
MCMCvis | Tools to Visualize, Manipulate, and Summarize MCMC Output |
mcMST | A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem |
mco | Multiple Criteria Optimization Algorithms and Related Functions |
Mcomp | Data from the M-Competitions |
mcompanion | Objects and Methods for Multi-Companion Matrices |
MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |
mcPAFit | Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo |
MCPAN | Multiple Comparisons Using Normal Approximation |
mcparallelDo | A Simplified Interface for Running Commands on Parallel Processes |
MCPMod | Design and Analysis of Dose-Finding Studies |
mcprofile | Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance |
mcr | Method Comparison Regression |
MCS | Model Confidence Set Procedure |
MCSim | Determine the Optimal Number of Clusters |
mcsm | Functions for Monte Carlo Methods with R |
McSpatial | Nonparametric spatial data analysis |
mctest | Multicollinearity Diagnostic Measures |
MCTM | Markov Chains Transition Matrices |
md | Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method |
md.log | Produces Markdown Log File with a Built-in Function Call |
mda | Mixture and Flexible Discriminant Analysis |
mdatools | Multivariate Data Analysis for Chemometrics |
mded | Measuring the Difference Between Two Empirical Distributions |
mdendro | Variable-Group Methods for Agglomerative Hierarchical Clustering |
MDFS | MultiDimensional Feature Selection |
mdftracks | Read and Write 'MTrackJ Data Files' |
mdhglm | Multivariate Double Hierarchical Generalized Linear Models |
MDimNormn | Multi-Dimensional MA Normalization for Plate Effect |
mdir.logrank | Multiple-Direction Logrank Test |
mdmb | Model Based Treatment of Missing Data |
MDMR | Multivariate Distance Matrix Regression |
mdpeer | Graph-Constrained Regression with Enhanced Regularization Parameters Selection |
MDplot | Visualising Molecular Dynamics Analyses |
MDPtoolbox | Markov Decision Processes Toolbox |
mds | Medical Devices Surveillance |
mdscore | Improved Score Tests for Generalized Linear Models |
mdsdt | Functions for Analysis of Data with General Recognition Theory |
MDSGUI | A GUI for interactive MDS in R |
MDSMap | High Density Genetic Linkage Mapping using Multidimensional Scaling |
mdsOpt | Searching for Optimal MDS Procedure for Metric and Interval-Valued Data |
mdsr | Complement to 'Modern Data Science with R' |
mdsstat | Statistical Trending for Medical Devices Surveillance |
mdw | Maximum Diversity Weighting |
meanr | Sentiment Analysis Scorer |
meanShiftR | A Computationally Efficient Mean Shift Implementation |
meaRtools | Micro-Electro Array (MEA) Analysis |
measurements | Tools for Units of Measurement |
measures | Performance Measures for Statistical Learning |
measuRing | Detection and Control of Tree-Ring Widths on Scanned Image Sections |
meboot | Maximum Entropy Bootstrap for Time Series |
MEclustnet | Fitting the Mixture of Experts Latent Position Cluster Model to Network Data |
MED | Mediation by Tilted Balancing |
MedDietCalc | Multi Calculator to Compute Scores of Adherence to Mediterranean Diet |
mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |
medfate | Mediterranean Forest Simulation |
medflex | Flexible Mediation Analysis Using Natural Effect Models |
MediaK | Calculate MeDiA_K Distance |
Mediana | Clinical Trial Simulations |
mediation | Causal Mediation Analysis |
medicalrisk | Medical Risk and Comorbidity Tools for ICD-9-CM Data |
medicare | Tools for Obtaining and Cleaning Medicare Public Use Files |
meditations | Prints a Random Quote from Marcus Aurelius' Book Meditations |
medmod | Simple Mediation and Moderation Analysis |
MedOr | Median Ordering Statistical R package |
MEET | MEET: Motif Elements Estimation Toolkit |
meetupapi | Access 'Meetup' API |
mefa | Multivariate Data Handling in Ecology and Biogeography |
mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |
Mega2R | Accessing and Processing a 'Mega2' Genetic Database |
MEGENA | Multiscale Clustering of Geometrical Network |
meifly | Interactive model exploration using GGobi |
mekko | Variable Width Bar Charts: Bar Mekko |
meltt | Matching Event Data by Location, Time and Type |
melviewr | View and Classify MELODIC Output for ICA+FIX |
mem | The Moving Epidemic Method |
memapp | The Moving Epidemic Method Web Application |
meme | Create Meme |
memery | Internet Memes for Data Analysts |
memgene | Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps |
memisc | Management of Survey Data and Presentation of Analysis Results |
memnet | Network Tools for Memory Research |
memo | In-Memory Caching for Repeated Computations |
memoise | Memoisation of Functions |
memor | A 'rmarkdown' Template that Can be Highly Customized |
MEMSS | Data Sets from Mixed-Effects Models in S |
memuse | Memory Estimation Utilities |
MendelianRandomization | Mendelian Randomization Package |
MenuCollection | Collection of Configurable GTK+ Menus |
MEPDF | Creation of Empirical Density Functions Based on Multivariate Data |
mephas | Shiny Application of Medical and Pharmaceutical Statistics |
merDeriv | Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models |
mergedblocks | Merged Block Randomization |
MergeGUI | A GUI for Merging Datasets in R |
merlin | Mixed Effects Regression for Linear, Non-Linear and User-Defined Models |
merror | Accuracy and Precision of Measurements |
merTools | Tools for Analyzing Mixed Effect Regression Models |
MESS | Miscellaneous Esoteric Statistical Scripts |
messaging | Conveniently Issue Messages, Warnings, and Errors |
meta | General Package for Meta-Analysis |
meta4diag | Meta-Analysis for Diagnostic Test Studies |
MetaAnalyser | An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine |
MetABEL | Meta-analysis of genome-wide SNP association results |
metaBLUE | BLUE for Combining Location and Scale Information in a Meta-Analysis |
metaBMA | Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis |
metaboGSE | Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data |
MetabolAnalyze | Probabilistic latent variable models for metabolomic data |
MetabolicSurv | A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature |
MetaboList | Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data |
metabolomics | Analysis of Metabolomics Data |
MetabolomicsBasics | Basic Functions to Investigate Metabolomics Data Matrices |
MetaboLouise | METABOlomics LOngitudinal SimUlation Engine |
MetaboQC | Normalize Metabolomic Data using QC Signal |
metacart | Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis |
metacoder | Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data |
metacom | Analysis of the 'Elements of Metacommunity Structure' |
MetaComp | EDGE Taxonomy Assignments Visualization |
metacor | Meta-analysis of correlation coefficients |
MetaCycle | Evaluate Periodicity in Large Scale Data |
metaDigitise | Extract and Summarise Data from Published Figures |
metadynminer | Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed' |
metafolio | Metapopulation simulations for conserving salmon through portfolio optimization |
metafor | Meta-Analysis Package for R |
metaforest | Exploring Heterogeneity in Meta-Analysis using Random Forests |
metafuse | Fused Lasso Approach in Regression Coefficient Clustering |
metagear | Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis |
metagen | Inference in Meta Analysis and Meta Regression |
metaheur | Metaheuristic Optimization Framework for Preprocessing Combinations |
MetaheuristicFPA | An Implementation of Flower Pollination Algorithm in R |
metaheuristicOpt | Metaheuristic for Optimization |
MetaIntegrator | Meta-Analysis of Gene Expression Data |
MetaLandSim | Landscape and Range Expansion Simulation |
metaLik | Likelihood Inference in Meta-Analysis and Meta-Regression Models |
MetaLonDA | Metagenomics Longitudinal Differential Abundance Method |
metaMA | Meta-analysis for MicroArrays |
MetamapsDB | Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics |
metamedian | Meta-Analysis of Medians |
metamer | Creates Data with Identical Statistics |
metamisc | Diagnostic and Prognostic Meta-Analysis |
metaMix | Bayesian Mixture Analysis for Metagenomic Community Profiling |
metansue | Meta-Analysis of Studies with Non-Statistically Significant Unreported Effects |
metap | Meta-Analysis of Significance Values |
MetaPath | Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE) |
MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |
metaplot | Data-Driven Plot Design |
metaplotr | Creates CrossHairs Plots for Meta-Analyses |
metaplus | Robust Meta-Analysis and Meta-Regression |
metaRMST | Meta-Analysis of RMSTD |
metaRNASeq | Meta-analysis of RNA-seq data |
metaSEM | Meta-Analysis using Structural Equation Modeling |
metasens | Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis |
MetaSKAT | Meta Analysis for SNP-Set (Sequence) Kernel Association Test |
MetaStan | Bayesian Meta-Analysis via 'Stan' |
MetaSubtract | Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results |
metatest | Fit and Test Metaregression Models |
Metatron | Meta-analysis for Classification Data and Correction to Imperfect Reference |
metavcov | Variance-Covariance Matrix for Multivariate Meta-Analysis |
metaviz | Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis |
meteo | Spatio-Temporal Analysis and Mapping of Meteorological Observations |
meteoForecast | Numerical Weather Predictions |
meteogRam | Tools for plotting meteograms |
meteoland | Landscape Meteorology Tools |
meteR | Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE) |
MetFns | Analysis of Visual Meteor Data |
Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |
MethodCompare | Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors |
Methplot | Visualize the methylation patterns |
MethylCapSig | Detection of Differentially Methylated Regions using MethylCap-Seq Data |
MetNorm | Statistical Methods for Normalizing Metabolomics Data |
MeTo | Meteorological Tools |
MetProc | Separate Metabolites into Likely Measurement Artifacts and True Metabolites |
metR | Tools for Easier Analysis of Meteorological Fields |
Metrics | Evaluation Metrics for Machine Learning |
metricsgraphics | Create Interactive Charts with the JavaScript 'MetricsGraphics' Library |
metricTester | Test Metric and Null Model Statistical Performance |
metRology | Support for Metrological Applications |
mets | Analysis of Multivariate Event Times |
metScanR | Find, Map, and Gather Environmental Data and Metadata |
MetSizeR | GUI Tool for Estimating Sample Sizes for Metabolomic Experiments |
MetStaT | Statistical metabolomics tools |
metsyn | Interface with the Meteo France Synop Data API |
mev | Multivariate Extreme Value Distributions |
mewAvg | A Fixed Memeory Moving Expanding Window Average |
mexhaz | Mixed Effect Excess Hazard Models |
mExplorer | Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data |
MF | Mitigated Fraction |
MFAg | Multiple Factor Analysis (MFA) |
mfbvar | Mixed-Frequency Bayesian VAR Models |
MFDFA | MultiFractal Detrended Fluctuation Analysis |
mfe | Meta-Feature Extractor |
mfGARCH | Mixed-Frequency GARCH Models |
MFHD | Multivariate Functional Halfspace Depth |
mFilter | Miscellaneous Time Series Filters |
MFKnockoffs | Model-Free Knockoff Filter for Controlled Variable Selection |
mfp | Multivariable Fractional Polynomials |
MFPCA | Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains |
MFT | The Multiple Filter Test for Change Point Detection |
MfUSampler | Multivariate-from-Univariate (MfU) MCMC Sampler |
mfx | Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs |
mgarchBEKK | Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes |
mgc | Multiscale Graph Correlation |
mgcv | Mixed GAM Computation Vehicle with Automatic Smoothness Estimation |
mgcViz | Visualisations for Generalized Additive Models |
MGL | Module Graphical Lasso |
MGLM | Multivariate Response Generalized Linear Models |
mglmn | Model Averaging for Multivariate GLM with Null Models |
mglR | Master Gene List |
mgm | Estimating Time-Varying k-Order Mixed Graphical Models |
mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |
MGRASTer | API Client for the MG-RAST Server of the US DOE KBase |
MGSDA | Multi-Group Sparse Discriminant Analysis |
mgsub | Safe, Multiple, Simultaneous String Substitution |
mGSZ | Gene set analysis based on GSZ-scoring function and asymptotic p-value |
mgwrsar | GWR and MGWR with Spatial Autocorrelation |
MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |
MHCtools | Analysis of MHC Data in Non-Model Species |
mhde | Minimum Hellinger Distance Test for Normality |
mHG | Minimum-Hypergeometric Test |
mhsmm | Inference for Hidden Markov and Semi-Markov Models |
mht | Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models |
mhtboot | Multiple Hypothesis Test Based on Distribution of p Values |
MHTcop | Tests Controlling the FDR / FWER under Certain Copula Models |
MHTdiscrete | Multiple Hypotheses Testing for Discrete Data |
MHTmult | Multiple Hypotheses Testing for Multiple Families/Groups Structure |
MHTrajectoryR | Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions |
mhurdle | Multiple Hurdle Tobit Models |
mi | Missing Data Imputation and Model Checking |
MIAmaxent | A Modular, Integrated Approach to Maximum Entropy Distribution Modeling |
mice | Multivariate Imputation by Chained Equations |
miceadds | Some Additional Multiple Imputation Functions, Especially for 'mice' |
micEcon | Microeconomic Analysis and Modelling |
micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |
micEconCES | Analysis with the Constant Elasticity of Substitution (CES) function |
micEconIndex | Price and Quantity Indices |
micEconSNQP | Symmetric Normalized Quadratic Profit Function |
miceExt | Extension Package to 'mice' |
miceFast | Fast Imputations Using 'Rcpp' and 'Armadillo' |
micemd | Multiple Imputation by Chained Equations with Multilevel Data |
miceMNAR | Missing not at Random Imputation Models for Multiple Imputation by Chained Equation |
micompr | Multivariate Independent Comparison of Observations |
miCoPTCM | Promotion Time Cure Model with Mis-Measured Covariates |
microbats | An Implementation of Bat Algorithm in R |
microbenchmark | Accurate Timing Functions |
microclass | Methods for Taxonomic Classification of Prokaryotes |
microcontax | The ConTax Data Package |
MicroDatosEs | Utilities for Official Spanish Microdata |
microdemic | 'Microsoft Academic' API Client |
MicroMacroMultilevel | Micro-Macro Multilevel Modeling |
micromap | Linked Micromap Plots |
micromapST | Linked Micromap Plots for General U. S. and Other Geographic Areas |
micropan | Microbial Pan-Genome Analysis |
microplot | Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel' |
microPop | Modelling Microbial Populations |
microsamplingDesign | Finding Optimal Microsampling Designs for Non-Compartmental Pharmacokinetic Analysis |
microseq | Basic Biological Sequence Handling |
MicroStrategyR | MicroStrategyR Package |
microsynth | Synthetic Control Methods with Micro- And Meso-Level Data |
MicSim | Performing Continuous-Time Microsimulation |
midas | Turn HTML 'Shiny' |
midasr | Mixed Data Sampling Regression |
midastouch | Multiple Imputation by Distance Aided Donor Selection |
MIDN | Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions |
midrangeMCP | Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions |
MigClim | Implementing dispersal into species distribution models |
migest | Methods for the Indirect Estimation of Bilateral Migration |
migration.indices | Migration indices |
migui | Graphical User Interface to the 'mi' Package |
miic | Learning Causal or Non-Causal Graphical Models Using Information Theory |
MIICD | Multiple Imputation for Interval Censored Data |
MIIVsem | Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models |
MILC | MIcrosimulation Lung Cancer (MILC) model |
miLineage | Association Tests for Microbial Lineages on a Taxonomic Tree |
milr | Multiple-Instance Logistic Regression with LASSO Penalty |
mime | Map Filenames to MIME Types |
mimi | Main Effects and Interactions in Mixed and Incomplete Data |
MImix | Mixture summary method for multiple imputation |
MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |
mindr | Convert Files Between Markdown or Rmarkdown Files and Mindmaps |
mineCitrus | Extract and Analyze Median Molecule Intensity from 'citrus' Output |
mined | Minimum Energy Designs |
minerva | Maximal Information-Based Nonparametric Exploration for Variable Analysis |
Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |
miniCRAN | Create a Mini Version of CRAN Containing Only Selected Packages |
miniGUI | Tcl/Tk Quick and Simple Function GUI |
minimalRSD | Minimally Changed CCD and BBD |
minimap | Create Tile Grid Maps |
minimax | Minimax distribution family |
minimaxdesign | Minimax and Minimax Projection Designs |
minimist | Parse Argument Options |
Minirand | Minimization Randomization |
miniUI | Shiny UI Widgets for Small Screens |
minpack.lm | R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds |
minqa | Derivative-free optimization algorithms by quadratic approximation |
minque | An R Package for Linear Mixed Model Analyses |
MInt | Learn Direct Interaction Networks |
minval | MINimal VALidation for Stoichiometric Reactions |
minxent | Entropy Optimization Distributions |
mipfp | Multidimensional Iterative Proportional Fitting and Alternative Models |
MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |
miRada | MicroRNA Microarray Data Analysis |
MiRAnorm | Adaptive Normalization for miRNA Data |
MiRKAT | Microbiome Regression-Based Kernel Association Test |
MIRL | Multiple Imputation Random Lasso for Variable Selection with Missing Entries |
miRNAss | Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples |
MiRSEA | 'MicroRNA' Set Enrichment Analysis |
mirt | Multidimensional Item Response Theory |
mirtCAT | Computerized Adaptive Testing with Multidimensional Item Response Theory |
miRtest | combined miRNA- and mRNA-testing |
mirtjml | Joint Maximum Likelihood Estimation for High-Dimensional Item Factor Analysis |
misaem | Logistic Regression with Missing Covariates |
misc3d | Miscellaneous 3D Plots |
miscF | Miscellaneous Functions |
miscFuncs | Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools |
misclassGLM | Computation of Generalized Linear Models with Misclassified Covariates Using Side Information |
miscor | Miscellaneous Functions for the Correlation Coefficient |
miscset | Miscellaneous Tools Set |
miscTools | Miscellaneous Tools and Utilities |
mise | Clears the Workspace (Mise en Place) |
Miso | Multi-Isotope Labeling for Metabolomics Analysis |
mispr | Multiple Imputation with Sequential Penalized Regression |
MiSPU | Microbiome Based Sum of Powered Score (MiSPU) Tests |
misreport | Statistical Analysis of Misreporting on Sensitive Survey Questions |
missCompare | Intuitive Missing Data Imputation Framework |
missDeaths | Simulating and Analyzing Time to Event Data in the Presence of Population Mortality |
missForest | Nonparametric Missing Value Imputation using Random Forest |
MissingDataGUI | A GUI for Missing Data Exploration |
missMDA | Handling Missing Values with Multivariate Data Analysis |
MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |
missRanger | Fast Imputation of Missing Values |
MiST | Mixed effects Score Test for continuous outcomes |
mistat | Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti |
mistr | Mixture and Composite Distributions |
mistral | Methods in Structural Reliability Analysis |
MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |
mitml | Tools for Multiple Imputation in Multilevel Modeling |
mitools | Tools for multiple imputation of missing data |
MittagLeffleR | Mittag-Leffler Family of Distributions |
miWQS | Multiple Imputation using Weighted Quantile Sum Analysis |
mix | Estimation/Multiple Imputation for Mixed Categorical and Continuous Data |
mixAK | Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering |
MixAll | Clustering and Classification using Model-Based Mixture Models |
mixchar | Mixture Model for the Deconvolution of Thermal Decay Curves |
mixdir | Cluster High Dimensional Categorical Datasets |
mixdist | Finite Mixture Distribution Models |
MixedDataImpute | Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models |
mixedMem | Tools for Discrete Multivariate Mixed Membership Models |
MixedPoisson | Mixed Poisson Models |
MixedPsy | Statistical Tools for the Analysis of Psychophysical Data |
mixedsde | Estimation Methods for Stochastic Differential Mixed Effects Models |
MixedTS | Mixed Tempered Stable Distribution |
mixEMM | A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable Missing Data |
mixexp | Design and Analysis of Mixture Experiments |
MIXFIM | Evaluation of the FIM in NLMEMs using MCMC |
MixfMRI | Mixture fMRI Clustering Analysis |
mixggm | Mixtures of Gaussian Graphical Models |
MixGHD | Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions |
mixKernel | Omics Data Integration Using Kernel Methods |
mixlink | Mixture Link Regression |
mixlm | Mixed Model ANOVA and Statistics for Education |
MixMAP | Implements the MixMAP Algorithm |
mixor | Mixed-Effects Ordinal Regression Analysis |
mixPHM | Mixtures of Proportional Hazard Models |
mixR | Finite Mixture Modeling for Raw and Binned Data |
mixRasch | Mixture Rasch Models with JMLE |
mixRaschTools | Plotting and Average Theta Functions for Multiple Class Mixed Rasch Models |
mixreg | Functions to Fit Mixtures of Regressions |
MixRF | A Random-Forest-Based Approach for Imputing Clustered Incomplete Data |
MixSAL | Mixtures of Multivariate Shifted Asymmetric Laplace (SAL) Distributions |
mixsep | Forensic Genetics DNA Mixture Separation |
MixSIAR | Bayesian Mixing Models in R |
MixSim | Simulating Data to Study Performance of Clustering Algorithms |
mixsmsn | Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions |
mixsqp | Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions |
mixtNB | DE Analysis of RNA-Seq Data by Mixtures of NB |
mixtools | Tools for Analyzing Finite Mixture Models |
mixtox | Curve Fitting and Mixture Toxicity Assessment |
mixture | Finite Gaussian Mixture Models for Clustering and Classification |
MixtureInf | Inference for Finite Mixture Models |
MixtureRegLTIC | Mixture Regression Models for Left-Truncated and Interval-Censored Data |
mize | Unconstrained Numerical Optimization Algorithms |
mizer | Multi-Species sIZE Spectrum Modelling in R |
mkde | 2D and 3D movement-based kernel density estimates (MKDEs) |
mkin | Kinetic Evaluation of Chemical Degradation Data |
MKLE | Maximum kernel likelihood estimation |
MKmisc | Miscellaneous Functions from M. Kohl |
mknapsack | Multiple Knapsack Problem Solver |
mkssd | Efficient multi-level k-circulant supersaturated designs |
ML.MSBD | Maximum Likelihood Inference on Multi-State Trees |
mlapi | Abstract Classes for Building 'scikit-learn' Like API |
MlBayesOpt | Hyper Parameter Tuning for Machine Learning, Using Bayesian Optimization |
mlbench | Machine Learning Benchmark Problems |
mlbgameday | Tools to Gather Data from Major League Baseball Advanced Media |
mlbstats | Major League Baseball Player Statistics Calculator |
MLCIRTwithin | Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality |
mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |
mldr | Exploratory Data Analysis and Manipulation of Multi-Label Data Sets |
mldr.datasets | R Ultimate Multilabel Dataset Repository |
MLDS | Maximum Likelihood Difference Scaling |
mle.tools | Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s) |
mleap | Interface to 'MLeap' |
mlearning | Machine learning algorithms with unified interface and confusion matrices |
MLEcens | Computation of the MLE for bivariate (interval) censored data |
mlegp | Maximum Likelihood Estimates of Gaussian Processes |
mlergm | Multilevel Exponential-Family Random Graph Models |
mleur | Maximum likelihood unit root test |
mlf | Machine Learning Foundations |
mlflow | Interface to 'MLflow' |
MLGL | Multi-Layer Group-Lasso |
mlgt | Multi-Locus Geno-Typing |
mlica2 | Independent Component Analysis using Maximum Likelihood |
MLID | Multilevel Index of Dissimilarity |
mljar | R API for MLJAR |
mlma | Multilevel Mediation Analysis |
mlmc | Multi-Level Monte Carlo |
MLmetrics | Machine Learning Evaluation Metrics |
MLML2R | Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions |
mlmmm | ML estimation under multivariate linear mixed models with missing values |
mlmRev | Examples from Multilevel Modelling Software Review |
mlogit | Multinomial Logit Models |
mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |
mlPhaser | Multi-Locus Haplotype Phasing |
MLPUGS | Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains) |
mlr | Machine Learning in R |
mlrCPO | Composable Preprocessing Operators and Pipelines for Machine Learning |
mlrMBO | Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions |
mlsjunkgen | Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers |
mlt | Most Likely Transformations |
mlt.docreg | Most Likely Transformations: Documentation and Regression Tests |
mltest | Classification Evaluation Metrics |
mltools | Machine Learning Tools |
mlVAR | Multi-Level Vector Autoregression |
mlxR | Simulation of Longitudinal Data |
MLZ | Mean Length-Based Estimators of Mortality using TMB |
MM | The Multiplicative Multinomial Distribution |
MM4LMM | Inference of Linear Mixed Models Through MM Algorithm |
mma | Multiple Mediation Analysis |
mmabig | Multiple Mediation Analysis for Big Data Sets |
MMAC | Data for Mathematical Modeling and Applied Calculus |
mmand | Mathematical Morphology in Any Number of Dimensions |
mmap | Map Pages of Memory |
mmapcharr | Memory-Map Character Files |
mmc | Multivariate Measurement Error Correction |
mmcm | Modified Maximum Contrast Method |
MMDai | Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data |
mmds | Mixture Model Distance Sampling (mmds) |
MMDvariance | Detecting Differentially Variable Genes Using the Mixture of Marginal Distributions |
mme | Multinomial Mixed Effects Models |
mmeln | Estimation of Multinormal Mixture Distribution |
MMeM | Multivariate Mixed Effects Model |
mmeta | Multivariate Meta-Analysis |
MmgraphR | Graphing for Markov, Hidden Markov, and Mixture Transition Distribution Models |
MMLR | Fitting Markov-Modulated Linear Regression Models |
mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |
mmm2 | Multivariate marginal models with shared regression parameters |
mmmgee | Simultaneous Inference for Multiple Linear Contrasts in GEE Models |
MMMS | Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification |
mmod | Modern Measures of Population Differentiation |
mMPA | Implementation of Marker-Assisted Mini-Pooling with Algorithm |
mmpf | Monte-Carlo Methods for Prediction Functions |
mmpp | Various Similarity and Distance Metrics for Marked Point Processes |
mmppr | Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts |
MMS | Fixed Effects Selection in Linear Mixed Models |
mmsample | Multivariate Matched Sampling |
mmtfa | Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers |
mmtsne | Multiple Maps t-SNE |
MMWRweek | Convert Dates to MMWR Day, Week, and Year |
mnis | Easy Downloading Capabilities for the Members' Name Information Service |
MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |
mnormpow | Multivariate Normal Distributions with Power Integrand |
mnormt | The Multivariate Normal and t Distributions |
MNP | R Package for Fitting the Multinomial Probit Model |
mnreadR | MNREAD Parameters Estimation and Curve Plotting |
MNS | Mixed Neighbourhood Selection |
mobForest | Model Based Random Forest Analysis |
Mobilize | Mobilize plots and functions |
mobsim | Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes |
MOCCA | Multi-Objective Optimization for Collecting Cluster Alternatives |
mockery | Mocking Library for R |
mockr | Mocking in R |
mod09nrt | Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT |
Modalclust | Hierarchical Modal Clustering |
modcmfitr | Fit a Modified Connor-Mosimann Distribution to Elicited Quantiles in Multinomial Problems |
modeest | Mode Estimation |
modehunt | Multiscale Analysis for Density Functions |
model4you | Stratified and Personalised Models Based on Model-Based Trees and Forests |
Modelcharts | Classification Model Charts |
modeldb | Fits Models Inside the Database |
Modeler | Classes and Methods for Training and Using Binary Prediction Models |
modelfree | Model-free estimation of a psychometric function |
ModelGood | Validation of risk prediction models |
modelgrid | A Framework for Creating, Managing and Training Multiple Caret Models |
ModelMap | Modeling and Map Production using Random Forest and Related Stochastic Models |
ModelMetrics | Rapid Calculation of Model Metrics |
modelObj | A Model Object Framework for Regression Analysis |
modelr | Modelling Functions that Work with the Pipe |
modeltools | Tools and Classes for Statistical Models |
modelwordcloud | Model Word Clouds |
moderndive | Tidyverse-Friendly Introductory Linear Regression |
modes | Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets |
modest | Model-Based Dose-Escalation Trials |
modesto | Modeling and Analysis of Stochastic Systems |
modEvA | Model Evaluation and Analysis |
modi | Multivariate Outlier Detection and Imputation for Incomplete Survey Data |
modifiedmk | Modified Versions of Mann Kendall and Spearman's Rho Trend Tests |
MODIS | Acquisition and Processing of MODIS Products |
modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |
MODISSnow | Provides a Function to Download MODIS Snow Cover |
MODISTools | Interface to the 'MODIS Land Products Subsets' Web Services |
MODIStsp | A Tool for Automating Download and Preprocessing of MODIS Land Products Data |
modmarg | Calculating Marginal Effects and Levels with Errors |
modMax | Community Structure Detection via Modularity Maximization |
modopt.matlab | 'MatLab'-Style Modeling of Optimization Problems |
modQR | Multiple-Output Directional Quantile Regression |
modTempEff | Modelling temperature effects using time series data |
modTurPoint | Estimate ED50 Based on Modified Turning Point Method |
moduleColor | Basic Module Functions |
modules | Self Contained Units of Source Code |
modygliani | MOlecular DYnamics GLobal ANalysis |
MOEADr | Component-Wise MOEA/D Implementation |
MoEClust | Gaussian Parsimonious Clustering Models with Covariates |
moezipfR | Marshall-Olkin Extended Zipf |
mogavs | Multiobjective Genetic Algorithm for Variable Selection in Regression |
MOJOV | Mojo Variants: Rare Variants analysis |
mokken | Conducts Mokken Scale Analysis |
moko | Multi-Objective Kriging Optimization |
molaR | Dental Surface Complexity Measurement Tools |
MoLE | Modeling Language Evolution |
MOLHD | Multiple Objective Latin Hypercube Design |
mombf | Moment and Inverse Moment Bayes Factors |
momentchi2 | Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables |
moments | Moments, cumulants, skewness, kurtosis and related tests |
momentuHMM | Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models |
Momocs | Morphometrics using R |
momr | Mining Metaomics Data (MetaOMineR) |
MomTrunc | Moments of Folded and Doubly Truncated Multivariate Distributions |
mondate | Keep track of dates in terms of months |
Mondrian | A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events |
MonetDB.R | Connect MonetDB to R |
MonetDBLite | In-Process Version of 'MonetDB' |
mongolite | Fast and Simple 'MongoDB' Client for R |
monitoR | Acoustic Template Detection in R |
monkeylearn | Accesses the Monkeylearn API for Text Classifiers and Extractors |
monmlp | Multi-Layer Perceptron Neural Network with Optional Monotonicity Constraints |
monographaR | Taxonomic Monographs Tools |
MonoInc | Monotonic Increasing |
monomvn | Estimation for Multivariate Normal and Student-t Data with Monotone Missingness |
MonoPhy | Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny |
MonoPoly | Functions to Fit Monotone Polynomials |
monoreg | Bayesian Monotonic Regression Using a Marked Point Process Construction |
monotonicity | Test for Monotonicity in Expected Asset Returns, Sorted by Portfolios |
monreg | Nonparametric Monotone Regression |
MonteCarlo | Automatic Parallelized Monte Carlo Simulations |
moonBook | Functions and Datasets for the Book by Keon-Woong Moon |
mopa | Species Distribution MOdeling with Pseudo-Absences |
mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |
MOQA | Basic Quality Data Assurance for Epidemiological Research |
MOrder | Check Time Homogeneity and Markov Chain Order |
morgenstemning | Color schemes compatible with red-green color perception difficulties |
morpheus | Estimate Parameters of Mixtures of Logistic Regressions |
Morpho | Calculations and Visualisations Related to Geometric Morphometrics |
morse | Modelling Tools for Reproduction and Survival Data in Ecotoxicology |
MorseGen | Simple raw data generator based on user-specified summary statistics |
mortAAR | Analysis of Archaeological Mortality Data |
MortalityGaps | The Double-Gap Life Expectancy Forecasting Model |
MortalityLaws | Parametric Mortality Models, Life Tables and HMD |
MortalitySmooth | Smoothing and Forecasting Poisson Counts with P-Splines |
MortalityTables | A Framework for Various Types of Mortality / Life Tables |
MortCast | Estimation and Projection of Age-Specific Mortality Rates |
mosaic | Project MOSAIC Statistics and Mathematics Teaching Utilities |
mosaicCalc | Function-Based Numerical and Symbolic Differentiation and Antidifferentiation |
mosaicCore | Common Utilities for Other MOSAIC-Family Packages |
mosaicData | Project MOSAIC Data Sets |
mosaicModel | An Interface to Statistical Modeling Independent of Model Architecture |
MOST | Multiphase Optimization Strategy |
mosum | Moving Sum Based Procedures for Changes in the Mean |
MotilityLab | Quantitative Analysis of Motion |
motmot.2.0 | Models of Trait Macroevolution on Trees |
moult | Models for Analysing Moult in Birds |
mountainplot | Mountain Plots, Folded Empirical Cumulative Distribution Plots |
mousetrack | Mouse-Tracking Measures from Trajectory Data |
mousetrap | Process and Analyze Mouse-Tracking Data |
move | Visualizing and Analyzing Animal Track Data |
movecost | Calculation of Accumulated Cost Surface and Least-Cost Paths Related to Human Movement Across the Landscape |
moveHMM | Animal Movement Modelling using Hidden Markov Models |
moveVis | Movement Data Visualization |
moveWindSpeed | Estimate Wind Speeds from Bird Trajectories |
movMF | Mixtures of von Mises-Fisher Distributions |
mozzie | Weekly Notified Dengue Cases in Sri Lanka |
mp | Multidimensional Projection Techniques |
mpa | CoWords Method |
mpath | Regularized Linear Models |
mpbart | Multinomial Probit Bayesian Additive Regression Trees |
MPCI | Multivariate Process Capability Indices (MPCI) |
mpcv | Multivariate Process Capability Vector |
MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |
mpe | Multiple Primary Endpoints |
MPINet | The package can implement the network-based metabolite pathway identification of pathways |
MPkn | Calculations of One Discrete Model in Several Time Steps |
MPLikelihoodWB | Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters |
mplot | Graphical Model Stability and Variable Selection Procedures |
MplusAutomation | An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus |
mpm | Multivariate Projection Methods |
mpmcorrelogram | Multivariate Partial Mantel Correlogram |
mpmi | Mixed-Pair Mutual Information Estimators |
MPN | Most Probable Number for Serial Dilutions |
mpoly | Symbolic Computation and More with Multivariate Polynomials |
mppa | Statistics for analysing multiple simultaneous point processes on the real line |
mppR | Multi-Parent Population QTL Analysis |
mpr | Multi-Parameter Regression (MPR) |
MPR.genotyping | Maximum Parsimony of Recombination to Infer Parental Genotypes |
MPS | Estimating Through the Maximum Product Spacing Approach |
MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |
MPsychoR | Modern Psychometrics with R |
mpt | Multinomial Processing Tree Models |
MPTinR | Analyze Multinomial Processing Tree Models |
MPTmultiverse | Multiverse Analysis of Multinomial Processing Tree Models |
mptools | RAMAS Metapop Tools |
MPV | Data Sets from Montgomery, Peck and Vining |
Mqrcm | M-Quantile Regression Coefficients Modeling |
mQTL | Metabolomic Quantitative Trait Locus Mapping |
mr.raps | Two Sample Mendelian Randomization using Robust Adjusted Profile Score |
mra | Mark-Recapture Analysis |
mratios | Ratios of Coefficients in the General Linear Model |
mrbsizeR | Scale Space Multiresolution Analysis of Random Signals |
MRCE | Multivariate Regression with Covariance Estimation |
MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |
mrds | Mark-Recapture Distance Sampling |
mreg | Fits regression models when the outcome is partially missing |
mregions | Marine Regions Data from 'Marineregions.org' |
MRFA | Fitting and Predicting Large-Scale Nonlinear Regression Problems using Multi-Resolution Functional ANOVA (MRFA) Approach |
MRFcov | Markov Random Fields with Additional Covariates |
mrfDepth | Depth Measures in Multivariate, Regression and Functional Settings |
mrgsolve | Simulate from ODE-Based Models |
MRH | Multi-Resolution Estimation of the Hazard Rate |
MRHawkes | Multivariate Renewal Hawkes Process |
mri | Modified Rand and Wallace Indices |
mritc | MRI Tissue Classification |
mRm | An R Package for Conditional Maximum Likelihood Estimation in Mixed Rasch Models |
mrMLM | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |
mrMLM.GUI | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |
MRMR | Multivariate Regression Models for Reserving |
mRMRe | "Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection" |
mro | Multiple Correlation |
MRPC | Mendelian Randomization (MR) Based PC Algorithm |
MRQoL | Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life |
MRS | Multi-Resolution Scanning for Cross-Sample Differences |
MRsurv | A multiplicative-regression model for relative survival |
MRTSampleSize | A Sample Size Calculator for Micro-Randomized Trials |
MRwarping | Multiresolution time warping for functional data |
ms.sev | Package for Calculation of ARMSS, Local MSSS and Global MSSS |
msaenet | Multi-Step Adaptive Estimation Methods for Sparse Regressions |
msaFACE | Moving Subset Analysis FACE |
msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |
msaR | Multiple Sequence Alignment for R Shiny |
MSbox | Mass Spectrometry Tools |
msBP | Multiscale Bernstein Polynomials for Densities |
mschart | Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint' Documents |
MSCMT | Multivariate Synthetic Control Method Using Time Series |
MScombine | Combine Data from Positive and Negative Ionization Mode Finding Common Entities |
mscstexta4r | R Client for the Microsoft Cognitive Services Text Analytics REST API |
mscstts | R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API |
mscsweblm4r | R Client for the Microsoft Cognitive Services Web Language Model REST API |
msda | Multi-Class Sparse Discriminant Analysis |
msde | Bayesian Inference for Multivariate Stochastic Differential Equations |
MsdeParEst | Parametric Estimation in Mixed-Effects Stochastic Differential Equations |
mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |
MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |
MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |
MSEtool | Management Strategy Evaluation Toolkit |
MSG | Data and Functions for the Book Modern Statistical Graphics |
MSGARCH | Markov-Switching GARCH Models |
msgl | Multinomial Sparse Group Lasso |
MSGLasso | Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure |
msgpack | A Compact, High Speed Data Format |
msgpackR | A library to serialize or unserialize data in MessagePack format |
msgps | Degrees of Freedom of Elastic Net, Adaptive Lasso and Generalized Elastic Net |
msigdbr | MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format |
msir | Model-Based Sliced Inverse Regression |
MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations |
msltrend | Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records |
msm | Multi-State Markov and Hidden Markov Models in Continuous Time |
msma | Multiblock Sparse Multivariable Analysis |
msme | Functions and Datasets for "Methods of Statistical Model Estimation" |
msmtools | Building Augmented Data to Run Multi-State Models with 'msm' Package |
MSMwRA | Multivariate Statistical Methods with R Applications |
msos | Data Sets and Functions Used in Multivariate Statistics: Old School by John Marden |
MSPRT | Modified Sequential Probability Ratio Test (MSPRT) |
MSQC | Multivariate Statistical Quality Control |
mssqlR | MSSQL Querying using R |
msSurv | Nonparametric Estimation for Multistate Models |
MST | Multivariate Survival Trees |
mstate | Data Preparation, Estimation and Prediction in Multi-State Models |
mstherm | Analyze MS/MS Protein Melting Data |
mstknnclust | MST-kNN Clustering Algorithm |
mstR | Procedures to Generate Patterns under Multistage Testing |
mstrio | Interface for 'MicroStrategy' REST API |
msu | Multivariate Symmetric Uncertainty and Other Measurements |
MSwM | Fitting Markov Switching Models |
MTA | Multiscalar Territorial Analysis |
mtconnectR | Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis |
MTDrh | Mass Transportation Distance Rank Histogram |
MTE | Maximum Tangent Likelihood and Other Robust Estimation for High-Dimensional Regression |
mthapower | Sample Size and Post-Hoc Power of Association Studies Involving Mitochondrial DNA Haplogroups |
mtk | Mexico ToolKit library (MTK) |
MTLR | Survival Prediction with Multi-Task Logistic Regression |
MtreeRing | A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images |
MTS | All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models |
mtsdi | Multivariate Time Series Data Imputation |
MTSYS | Methods in Mahalanobis-Taguchi (MT) System |
MTurkR | R Client for the MTurk Requester API |
MTurkRGUI | A Graphical User Interface for MTurkR |
MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |
MuChPoint | Multiple Change Point |
muckrock | Data on Freedom of Information Act Requests |
mudata2 | Interchange Tools for Multi-Parameter Spatiotemporal Data |
mudens | Density Estimate |
mudfold | Multiple UniDimensional unFOLDing |
mueRelativeRisk | Relative Risk Based on the Ratio of Median Unbiased Estimates |
MuFiCokriging | Multi-Fidelity Cokriging models |
muhaz | Hazard Function Estimation in Survival Analysis |
muHVT | Constructing Hierarchical Voronoi Tessellations and Overlay Heatmap for Data Analysis |
muir | Exploring Data with Tree Data Structures |
MullerPlot | Generates Muller Plot from Population/Abundance/Frequency Dynamics Data |
MultAlloc | Optimal Allocation in Stratified Sampling |
multcomp | Simultaneous Inference in General Parametric Models |
multcompView | Visualizations of Paired Comparisons |
multDM | Multivariate Version of the Diebold-Mariano Test |
multdyn | Multiregression Dynamic Models |
MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |
multfisher | Optimal Exact Tests for Multiple Binary Endpoints |
multgee | GEE Solver for Correlated Nominal or Ordinal Multinomial Responses |
multiApply | Apply Functions to Multiple Multidimensional Arrays or Vectors |
multiAssetOptions | Finite Difference Method for Multi-Asset Option Valuation |
multiband | Period Estimation for Multiple Bands |
MultiBD | Multivariate Birth-Death Processes |
multibiplotGUI | Multibiplot Analysis in R |
multiCA | Multinomial Cochran-Armitage Trend Test |
multicastR | A Companion to the Multi-CAST Collection |
multichull | A Generic Convex-Hull-Based Model Selection Method |
multicmp | Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution |
MultiCNVDetect | Multiple Copy Number Variation Detection |
multicolor | Add Multiple Colors to your Console Output |
multicon | Multivariate Constructs |
multicool | Permutations of Multisets in Cool-Lex Order |
multiDimBio | Multivariate Analysis and Visualization for Biological Data |
MultiFit | Multivariate Multiscale Framework for Independence Tests |
multifluo | Dealing with Several Images of a Same Object Constituted of Different Zones |
multifwf | Read Fixed Width Format Files Containing Lines of Different Type |
MultiGHQuad | Multidimensional Gauss-Hermite Quadrature |
multigraph | Plot and Manipulate Multigraphs |
multigroup | Multigroup Data Analysis |
MultiJoin | Enables Efficient Joining of Data File on Common Fields using the Unix Utility Join |
multilaterals | Transitive Index Numbers for Cross-Sections and Panel Data |
MultiLCIRT | Multidimensional Latent Class Item Response Theory Models |
multilevel | Multilevel Functions |
multilevelPSA | Multilevel Propensity Score Analysis |
multimark | Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks |
MultiMeta | Meta-analysis of Multivariate Genome Wide Association Studies |
multimode | Mode Testing and Exploring |
multinbmod | Regression analysis of overdispersed correlated count data |
multinet | Analysis and Mining of Multilayer Social Networks |
multinets | Multilevel Networks Analysis |
MultinomialCI | Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz |
multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |
MultiOrd | Generation of Multivariate Ordinal Variates |
multipanelfigure | Infrastructure to Assemble Multi-Panel Figures (from Grobs) |
multiPIM | Variable Importance Analysis with Population Intervention Models |
MultipleBubbles | Test and Detection of Explosive Behaviors for Time Series |
multipleNCC | Weighted Cox-Regression for Nested Case-Control Data |
multiplex | Algebraic Tools for the Analysis of Multiple Social Networks |
MultiplierDEA | Multiplier Data Envelopment Analysis and Cross Efficiency |
multipol | Multivariate Polynomials |
multiRDPG | Multiple Random Dot Product Graphs |
multirich | Calculate Multivariate Richness via UTC and sUTC |
MultiRNG | Multivariate Pseudo-Random Number Generation |
multiROC | Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications |
MultiRR | Bias, Precision, and Power for Multi-Level Random Regressions |
multiselect | Selecting Combinations of Predictors by Leveraging Multiple AUCs for an Ordered Multilevel Outcome |
multisensi | Multivariate Sensitivity Analysis |
MultisiteMediation | Causal Mediation Analysis in Multisite Trials |
MultiSkew | Measures, Tests and Removes Multivariate Skewness |
multisom | Clustering a Data Set using Multi-SOM Algorithm |
multispatialCCM | Multispatial Convergent Cross Mapping |
multistate | Fitting Multistate Models |
multistateutils | Utility Functions for Parametric Multi-State Models |
MultiSV | MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing |
multitaper | Spectral Analysis Tools using the Multitaper Method |
multivariance | Measuring Multivariate Dependence Using Distance Multivariance |
MultivariateRandomForest | Models Multivariate Cases Using Random Forests |
MultiVarMI | Multiple Imputation for Multivariate Data |
MultiVarSel | Variable Selection in a Multivariate Linear Model |
multivator | A Multivariate Emulator |
multiwave | Estimation of Multivariate Long-Memory Models Parameters |
multiway | Component Models for Multi-Way Data |
multiwayvcov | Multi-Way Standard Error Clustering |
MultNonParam | Multivariate Nonparametric Methods |
multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |
muma | Metabolomics Univariate and Multivariate Analysis |
MuMIn | Multi-Model Inference |
mumm | Multiplicative Mixed Models using the Template Model Builder |
munfold | Metric Unfolding |
munsell | Utilities for Using Munsell Colours |
munsellinterpol | Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB |
muRL | Mailmerge using R, LaTeX, and the Web |
murphydiagram | Murphy Diagrams for Forecast Comparisons |
MUS | Monetary Unit Sampling and Estimation Methods, Widely Used in Auditing |
music | Learn and Experiment with Music Theory |
musica | Multiscale Climate Model Assessment |
musicNMR | Conversion of Nuclear Magnetic Resonance spectrum in audio file |
muStat | Prentice Rank Sum Test and McNemar Test |
mut | Pairwise Likelihood Ratios |
mutoss | Unified Multiple Testing Procedures |
mutossGUI | A Graphical User Interface for the MuToss Project |
mutSignatures | Decipher Mutational Signatures from Somatic Mutational Catalogs |
MuViCP | MultiClass Visualizable Classification using Combination of Projections |
MVA | An Introduction to Applied Multivariate Analysis with R |
mvabund | Statistical Methods for Analysing Multivariate Abundance Data |
MVar | Multivariate Analysis |
MVar.pt | Analise multivariada (brazilian portuguese) |
MVB | Mutivariate Bernoulli log-linear model |
MvBinary | Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution |
mvbutils | Workspace Organization, Code and Documentation Editing, Package Prep and Editing, Etc |
mvc | Multi-View Clustering |
mvcluster | Multi-View Clustering |
mvctm | Multivariate Variance Components Tests for Multilevel Data |
mvcwt | Wavelet Analysis of Multiple Time Series |
mvdalab | Multivariate Data Analysis Laboratory |
mvglmmRank | Multivariate Generalized Linear Mixed Models for Ranking Sports Teams |
mvinfluence | Influence Measures and Diagnostic Plots for Multivariate Linear Models |
MVisAGe | Compute and Visualize Bivariate Associations |
MVLM | Multivariate Linear Model with Analytic p-Values |
mvLSW | Multivariate, Locally Stationary Wavelet Process Estimation |
mvmesh | Multivariate Meshes and Hi |