rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to make use of three databases for genomics, GO, Reactome and Wikipathways.

Version: 1.0.1
Depends: R (≥ 2.10), hommel (≥ 1.2)
Published: 2019-02-21
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor <m.ebrahimpoor at lumc.nl>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: rSEA results

Downloads:

Reference manual: rSEA.pdf
Package source: rSEA_1.0.1.tar.gz
Windows binaries: r-devel: rSEA_1.0.1.zip, r-release: rSEA_1.0.1.zip, r-oldrel: rSEA_1.0.1.zip
OS X binaries: r-release: rSEA_1.0.1.tgz, r-oldrel: rSEA_1.0.1.tgz
Old sources: rSEA archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rSEA to link to this page.