CRAN Package Check Results for Package DEMEtics

Last updated on 2019-10-18 20:46:14 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8-7 3.10 25.75 28.85 NOTE
r-devel-linux-x86_64-debian-gcc 0.8-7 2.71 20.54 23.25 NOTE
r-devel-linux-x86_64-fedora-clang 0.8-7 36.04 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8-7 34.53 NOTE
r-devel-windows-ix86+x86_64 0.8-7 11.00 50.00 61.00 NOTE
r-patched-linux-x86_64 0.8-7 3.24 25.62 28.86 NOTE
r-patched-solaris-x86 0.8-7 51.10 NOTE
r-release-linux-x86_64 0.8-7 2.93 25.28 28.21 NOTE
r-release-windows-ix86+x86_64 0.8-7 6.00 53.00 59.00 NOTE
r-release-osx-x86_64 0.8-7 NOTE
r-oldrel-windows-ix86+x86_64 0.8-7 4.00 32.00 36.00 NOTE
r-oldrel-osx-x86_64 0.8-7 NOTE

Check Details

Version: 0.8-7
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8-7
Check: R code for possible problems
Result: NOTE
    Bootstrapping.CI: no visible global function definition for 'quantile'
    D.Jost: no visible global function definition for 'read.table'
    D.Jost: no visible global function definition for 'write.table'
    Dv.locis.corrected.calc: no visible global function definition for
     'p.adjust'
    Gst.Nei: no visible global function definition for 'read.table'
    Gst.Nei: no visible global function definition for 'write.table'
    H.out: no visible global function definition for 'write.table'
    Hardy.calc: no visible global function definition for 'chisq.test'
    critical.ci.values: no visible global function definition for
     'quantile'
    inputformat: no visible global function definition for 'read.table'
    inputformat: no visible global function definition for 'write.table'
    over.all.pops: no visible global function definition for 'write.table'
    p.value.correcture: no visible global function definition for
     'p.adjust'
    pair.pops: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     chisq.test p.adjust quantile read.table write.table
    Consider adding
     importFrom("stats", "chisq.test", "p.adjust", "quantile")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
    
    Found the following calls to attach():
    File 'DEMEtics/R/inputformat.r':
     attach(y)
    See section 'Good practice' in '?attach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.8-7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'Example.t.H.values.txt' 'Example.t.Hest_loci.values.txt'
     'Example.t.Hest_mean.values.txt'
     'Example.t.allelefreq.2019-10-17.txt'
     'Example.t.overall.Dest.loci.2019-10-17.txt'
     'Example.t.overall.Dest.loci.ci2019-10-17.txt'
     'Example.t.overall.Dest.loci.p.2019-10-17.txt'
     'Example.t.overall.Dest.mean.2019-10-17.txt'
     'Example.t.overall.Dest.mean.ci2019-10-17.txt'
     'Example.t.overall.Dest.mean.p.2019-10-17.txt'
     'Example.t.sample.sizes.2019-10-17.txt' 'Example.u.H.values.txt'
     'Example.u.Hest_loci.values.txt' 'Example.u.Hest_mean.values.txt'
     'Example.u.allelefreq.2019-10-17.txt'
     'Example.u.pairwise.Gst.loci.2019-10-17.txt'
     'Example.u.pairwise.Gst.mean.2019-10-17.txt'
     'Example.u.sample.sizes.2019-10-17.txt' 'Output-Inputformat.txt'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8-7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘Example.t.H.values.txt’ ‘Example.t.Hest_loci.values.txt’
     ‘Example.t.Hest_mean.values.txt’
     ‘Example.t.allelefreq.2019-10-18.txt’
     ‘Example.t.overall.Dest.loci.2019-10-18.txt’
     ‘Example.t.overall.Dest.loci.ci2019-10-18.txt’
     ‘Example.t.overall.Dest.loci.p.2019-10-18.txt’
     ‘Example.t.overall.Dest.mean.2019-10-18.txt’
     ‘Example.t.overall.Dest.mean.ci2019-10-18.txt’
     ‘Example.t.overall.Dest.mean.p.2019-10-18.txt’
     ‘Example.t.sample.sizes.2019-10-18.txt’ ‘Example.u.H.values.txt’
     ‘Example.u.Hest_loci.values.txt’ ‘Example.u.Hest_mean.values.txt’
     ‘Example.u.allelefreq.2019-10-18.txt’
     ‘Example.u.pairwise.Gst.loci.2019-10-18.txt’
     ‘Example.u.pairwise.Gst.mean.2019-10-18.txt’
     ‘Example.u.sample.sizes.2019-10-18.txt’ ‘Output-Inputformat.txt’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.8-7
Check: R code for possible problems
Result: NOTE
    Bootstrapping.CI: no visible global function definition for ‘quantile’
    D.Jost: no visible global function definition for ‘read.table’
    D.Jost: no visible global function definition for ‘write.table’
    Dv.locis.corrected.calc: no visible global function definition for
     ‘p.adjust’
    Gst.Nei: no visible global function definition for ‘read.table’
    Gst.Nei: no visible global function definition for ‘write.table’
    H.out: no visible global function definition for ‘write.table’
    Hardy.calc: no visible global function definition for ‘chisq.test’
    critical.ci.values: no visible global function definition for
     ‘quantile’
    inputformat: no visible global function definition for ‘read.table’
    inputformat: no visible global function definition for ‘write.table’
    over.all.pops: no visible global function definition for ‘write.table’
    p.value.correcture: no visible global function definition for
     ‘p.adjust’
    pair.pops: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     chisq.test p.adjust quantile read.table write.table
    Consider adding
     importFrom("stats", "chisq.test", "p.adjust", "quantile")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8-7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘Example.t.H.values.txt’ ‘Example.t.Hest_loci.values.txt’
     ‘Example.t.Hest_mean.values.txt’
     ‘Example.t.allelefreq.2019-10-12.txt’
     ‘Example.t.overall.Dest.loci.2019-10-12.txt’
     ‘Example.t.overall.Dest.loci.ci2019-10-12.txt’
     ‘Example.t.overall.Dest.loci.p.2019-10-12.txt’
     ‘Example.t.overall.Dest.mean.2019-10-12.txt’
     ‘Example.t.overall.Dest.mean.ci2019-10-12.txt’
     ‘Example.t.overall.Dest.mean.p.2019-10-12.txt’
     ‘Example.t.sample.sizes.2019-10-12.txt’ ‘Example.u.H.values.txt’
     ‘Example.u.Hest_loci.values.txt’ ‘Example.u.Hest_mean.values.txt’
     ‘Example.u.allelefreq.2019-10-12.txt’
     ‘Example.u.pairwise.Gst.loci.2019-10-12.txt’
     ‘Example.u.pairwise.Gst.mean.2019-10-12.txt’
     ‘Example.u.sample.sizes.2019-10-12.txt’ ‘Output-Inputformat.txt’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8-7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘Example.t.H.values.txt’ ‘Example.t.Hest_loci.values.txt’
     ‘Example.t.Hest_mean.values.txt’
     ‘Example.t.allelefreq.2019-10-13.txt’
     ‘Example.t.overall.Dest.loci.2019-10-13.txt’
     ‘Example.t.overall.Dest.loci.ci2019-10-13.txt’
     ‘Example.t.overall.Dest.loci.p.2019-10-13.txt’
     ‘Example.t.overall.Dest.mean.2019-10-13.txt’
     ‘Example.t.overall.Dest.mean.ci2019-10-13.txt’
     ‘Example.t.overall.Dest.mean.p.2019-10-13.txt’
     ‘Example.t.sample.sizes.2019-10-13.txt’ ‘Example.u.H.values.txt’
     ‘Example.u.Hest_loci.values.txt’ ‘Example.u.Hest_mean.values.txt’
     ‘Example.u.allelefreq.2019-10-13.txt’
     ‘Example.u.pairwise.Gst.loci.2019-10-13.txt’
     ‘Example.u.pairwise.Gst.mean.2019-10-13.txt’
     ‘Example.u.sample.sizes.2019-10-13.txt’ ‘Output-Inputformat.txt’
Flavor: r-devel-linux-x86_64-fedora-gcc