CRAN Package Check Results for Package MetaIntegrator

Last updated on 2019-05-20 00:47:54 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.0 13.54 147.32 160.86 OK
r-devel-linux-x86_64-debian-gcc 2.0.0 11.16 142.42 153.58 OK
r-devel-linux-x86_64-fedora-clang 2.0.0 178.42 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.0 180.27 NOTE
r-devel-windows-ix86+x86_64 2.0.0 32.00 198.00 230.00 OK
r-patched-linux-x86_64 2.0.0 10.54 140.21 150.75 OK
r-patched-solaris-x86 2.0.0 211.10 NOTE
r-release-linux-x86_64 2.0.0 13.64 142.44 156.08 OK
r-release-windows-ix86+x86_64 2.0.0 39.00 213.00 252.00 OK
r-release-osx-x86_64 2.0.0 ERROR
r-oldrel-windows-ix86+x86_64 2.0.0 25.00 188.00 213.00 OK
r-oldrel-osx-x86_64 2.0.0 WARN

Check Details

Version: 2.0.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’ ‘readr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-oldrel-osx-x86_64

Version: 2.0.0
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'multtest', 'Biobase', 'preprocessCore', 'GEOquery', 'GEOmetadb',
     'snplist', 'AnnotationDbi'
    
    Packages suggested but not available for checking:
     'BiocStyle', 'BiocGenerics'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 2.0.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-osx-x86_64

Version: 2.0.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 26-27 (MetaIntegrator.Rmd)
    Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
    there is no package called 'BiocStyle'
    Execution halted
Flavor: r-oldrel-osx-x86_64