Last updated on 2023-03-20 15:57:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6.0 | NOTE | ||||
| r-devel-linux-x86_64-debian-gcc | 2.6.0 | 46.38 | 211.13 | 257.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.6.0 | 456.78 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6.0 | 459.34 | NOTE | |||
| r-devel-windows-x86_64 | 2.6.0 | 148.00 | 376.00 | 524.00 | NOTE | |
| r-patched-linux-x86_64 | 2.6.0 | 56.82 | 274.84 | 331.66 | NOTE | |
| r-release-linux-x86_64 | 2.6.0 | 47.18 | 269.27 | 316.45 | NOTE | |
| r-release-macos-arm64 | 2.6.0 | 101.00 | NOTE | |||
| r-release-macos-x86_64 | 2.6.0 | 158.00 | NOTE | |||
| r-release-windows-x86_64 | 2.6.0 | 112.00 | 414.00 | 526.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.6.0 | 107.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.6.0 | 184.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.6.0 | 128.00 | 424.00 | 552.00 | NOTE |
Version: 2.6.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TreeDistData’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.6.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [17s/37s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat", warn.conflicts = FALSE)
> library("TreeDist")
>
> test_check("TreeDist")
[ FAIL 1 | WARN 0 | SKIP 4 | PASS 1280 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (4)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-lap.R:291:3'): Avoid infinite loop in LAP ──────────────────────
Error in `NeworderPhylo(nTip, edge[, 1], edge[, 2], nEdge, 1)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_lt(...) at test-lap.R:291:2
2. │ └─testthat::quasi_label(enquo(expected), expected.label, arg = "expected")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─TreeDist::ClusteringInfoDistance(...)
5. │ └─TreeDist::MutualClusteringInfo(...)
6. │ └─TreeDist::CalculateTreeDistance(...)
7. ├─TreeTools::Cladewise(...)
8. └─TreeTools:::Cladewise.phylo(...)
9. └─TreeTools::NeworderPhylo(nTip, edge[, 1], edge[, 2], nEdge, 1)
[ FAIL 1 | WARN 0 | SKIP 4 | PASS 1280 ]
Deleting unused snapshots:
• Plot3/plotting-order.svg
• plot/jrf-vm-matchzeros-false.svg
• plot/rf-collapse-a-node.svg
• plot/rf-collapse-and-change.svg
• plot/rf-vm-single-splits-plainedges.svg
• plot/test-lc-letters.svg
• plot/test-uc-letters.svg
• plot/test-vmr.svg
• plot/test-without-space.svg
• plot/visualize-mci-matching.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Generalized-RF.Rmd’ using rmarkdown
--- finished re-building ‘Generalized-RF.Rmd’
--- re-building ‘Robinson-Foulds.Rmd’ using rmarkdown
--- finished re-building ‘Robinson-Foulds.Rmd’
--- re-building ‘Using-TreeDist.Rmd’ using rmarkdown
--- finished re-building ‘Using-TreeDist.Rmd’
--- re-building ‘compare-treesets.Rmd’ using rmarkdown
Quitting from lines 143-171 (compare-treesets.Rmd)
Error: processing vignette ‘compare-treesets.Rmd’ failed with diagnostics:
DLL requires the use of native symbols
--- failed re-building ‘compare-treesets.Rmd’
--- re-building ‘different-leaves.Rmd’ using rmarkdown
--- finished re-building ‘different-leaves.Rmd’
--- re-building ‘information.Rmd’ using rmarkdown
--- finished re-building ‘information.Rmd’
--- re-building ‘landscapes.Rmd’ using rmarkdown
--- finished re-building ‘landscapes.Rmd’
--- re-building ‘treespace.Rmd’ using rmarkdown
--- finished re-building ‘treespace.Rmd’
--- re-building ‘using-distances.Rmd’ using rmarkdown
--- finished re-building ‘using-distances.Rmd’
SUMMARY: processing the following file failed:
‘compare-treesets.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.6.0
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64