CRAN Package Check Results for Package rstpm2

Last updated on 2021-12-07 23:54:42 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.2 182.53 176.47 359.00 OK
r-devel-linux-x86_64-debian-gcc 1.5.2 127.78 131.50 259.28 WARN
r-devel-linux-x86_64-fedora-clang 1.5.2 509.97 WARN
r-devel-linux-x86_64-fedora-gcc 1.5.2 461.16 WARN
r-devel-windows-x86_64-new-UL 1.5.2 223.00 340.00 563.00 OK
r-devel-windows-x86_64-new-TK 1.5.2 NOTE
r-devel-windows-x86_64-old 1.5.2 219.00 206.00 425.00 OK
r-patched-linux-x86_64 1.5.2 160.08 176.68 336.76 WARN
r-release-linux-x86_64 1.5.2 151.34 179.39 330.73 OK
r-release-macos-arm64 1.5.2 NOTE
r-release-macos-x86_64 1.5.2 NOTE
r-release-windows-ix86+x86_64 1.5.2 293.00 311.00 604.00 NOTE
r-oldrel-macos-x86_64 1.5.2 NOTE
r-oldrel-windows-ix86+x86_64 1.5.2 414.00 315.00 729.00 NOTE

Check Details

Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Introduction.Rnw’ using Sweave
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    --- finished re-building ‘Introduction.Rnw’
    
    --- re-building ‘SimpleGuide.Rnw’ using Sweave
    --- finished re-building ‘SimpleGuide.Rnw’
    
    --- re-building ‘multistate.Rnw’ using Sweave
    Error: processing vignette ‘multistate.Rnw’ failed with diagnostics:
    Running ‘texi2dvi’ on ‘multistate.tex’ failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Emergency stop.
     ...
    
    l.105 ...nsition intensities at time $t$\footnote{
     Technically, this is $t-$....
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘multistate.Rnw’
    
    --- re-building ‘predictnl.Rnw’ using Sweave
    Warning in survfit.coxph(obj, se.fit = FALSE) :
     the model contains interactions; the default curve based on columm means of the X matrix is almost certainly not useful. Consider adding a newdata argument.
    --- finished re-building ‘predictnl.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘multistate.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.5.2
Check: installed package size
Result: NOTE
     installed size is 16.2Mb
     sub-directories of 1Mb or more:
     libs 13.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.2
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘flexsurv’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Introduction.Rnw’ using Sweave
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    --- finished re-building ‘Introduction.Rnw’
    
    --- re-building ‘SimpleGuide.Rnw’ using Sweave
    --- finished re-building ‘SimpleGuide.Rnw’
    
    --- re-building ‘multistate.Rnw’ using Sweave
    Error: processing vignette 'multistate.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'multistate.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor p
    --- failed re-building ‘multistate.Rnw’
    
    --- re-building ‘predictnl.Rnw’ using Sweave
    Warning in survfit.coxph(obj, se.fit = FALSE) :
     the model contains interactions; the default curve based on columm means of the X matrix is almost certainly not useful. Consider adding a newdata argument.
    --- finished re-building ‘predictnl.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘multistate.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5.2
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building 'Introduction.Rnw' using Sweave
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    --- finished re-building ‘Introduction.Rnw’
    
    --- re-building ‘SimpleGuide.Rnw’ using Sweave
    --- finished re-building ‘SimpleGuide.Rnw’
    
    --- re-building ‘multistate.Rnw’ using Sweave
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "multistate.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    Error: processing vignette 'multistate.Rnw' failed with diagnostics:
    running 'texi2dvi' on 'multistate.tex' failed
    
    LaTeX errors:
    tistate.tex:105: Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    tistate.tex:483: Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    tistate.tex:528: Package xcolor Error: Undefined color `Red'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    
    --- failed re-building ‘multistate.Rnw’
    
    --- re-building ‘predictnl.Rnw’ using Sweave
    Warning in survfit.coxph(obj, se.fit = FALSE) :
     the model contains interactions; the default curve based on columm means of the X matrix is almost certainly not useful. Consider adding a newdata argument.
    --- finished re-building ‘predictnl.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘multistate.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Introduction.Rnw’ using Sweave
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    --- finished re-building ‘Introduction.Rnw’
    
    --- re-building ‘SimpleGuide.Rnw’ using Sweave
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    --- finished re-building ‘SimpleGuide.Rnw’
    
    --- re-building ‘multistate.Rnw’ using Sweave
    Error: processing vignette 'multistate.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'multistate.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `Blue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Emergency stop.
     ...
    
    l.105 ...nsition intensities at time $t$\footnote{
     Technically, this is $t-$....
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘multistate.Rnw’
    
    --- re-building ‘predictnl.Rnw’ using Sweave
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    Warning in survfit.coxph(obj, se.fit = FALSE) :
     the model contains interactions; the default curve based on columm means of the X matrix is almost certainly not useful. Consider adding a newdata argument.
    --- finished re-building ‘predictnl.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘multistate.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-linux-x86_64