CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.

Version: 0.1.3
Depends: R (≥ 3.6)
Imports: ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram
Suggests: testthat
Published: 2020-09-18
DOI: 10.32614/CRAN.package.CovidMutations
Author: Shaoqian Ma ORCID iD [aut, cre], Yongyou Zhang ORCID iD [aut]
Maintainer: Shaoqian Ma <shaoqianma at>
License: Artistic-2.0
NeedsCompilation: no
Materials: README NEWS
In views: Epidemiology
CRAN checks: CovidMutations results


Reference manual: CovidMutations.pdf


Package source: CovidMutations_0.1.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CovidMutations_0.1.3.tgz, r-oldrel (arm64): CovidMutations_0.1.3.tgz, r-release (x86_64): CovidMutations_0.1.3.tgz, r-oldrel (x86_64): CovidMutations_0.1.3.tgz


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