cfr: Estimate Disease Severity and Case Ascertainment

Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) <doi:10.1371/journal.pone.0006852>.

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: checkmate, stats
Suggests: bookdown, data.table, distcrete, distributional, dplyr, forcats, ggplot2, incidence2, knitr, purrr, rmarkdown, scales, spelling, testthat (≥ 3.0.0), tidyr
Published: 2024-06-12
DOI: 10.32614/CRAN.package.cfr
Author: Pratik R. Gupte ORCID iD [aut, cph], Adam Kucharski ORCID iD [aut, cph, cre], Tim Russell ORCID iD [aut, cph], Joshua W. Lambert ORCID iD [rev], Hugo Gruson ORCID iD [rev], Tim Taylor ORCID iD [rev], James M. Azam ORCID iD [rev], Abdoelnaser M. Degoot ORCID iD [rev], Sebastian Funk ORCID iD [rev]
Maintainer: Adam Kucharski <adam.kucharski at>
License: MIT + file LICENSE
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
In views: Epidemiology
CRAN checks: cfr results


Reference manual: cfr.pdf
Vignettes: Estimating disease severity while correcting for reporting delays
Handling data from {incidence2}
A primer on working with delay distributions
Estimating the proportion of cases that are ascertained during an outbreak
Calculating a static, delay-adjusted estimate of disease severity
Estimating how disease severity varies over the course of an outbreak
Software permissions and regulations


Package source: cfr_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): cfr_0.1.1.tgz, r-oldrel (arm64): cfr_0.1.1.tgz, r-release (x86_64): cfr_0.1.1.tgz, r-oldrel (x86_64): cfr_0.1.1.tgz
Old sources: cfr archive


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