geneticae: Statistical Tools for the Analysis of Multi Environment Agronomic Trials

Data from multi environment agronomic trials, which are often carried out by plant breeders, can be analyzed with the tools offered by this package such as the Additive Main effects and Multiplicative Interaction model or 'AMMI' ('Gauch' 1992, ISBN:9780444892409) and the Site Regression model or 'SREG' ('Cornelius' 1996, <doi:10.1201/9780367802226>). Since these methods present a poor performance under the presence of outliers and missing values, this package includes robust versions of the 'AMMI' model ('Rodrigues' 2016, <doi:10.1093/bioinformatics/btv533>), and also imputation techniques specifically developed for this kind of data ('Arciniegas-Alarcón' 2014, <doi:10.2478/bile-2014-0006>).

Version: 0.1.0
Depends: R (≥ 2.12.0)
Imports: stats, GGEBiplots, ggforce, ggplot2, scales, MASS, pcaMethods, rrcov, dplyr, bcv, missMDA, calibrate, graphics, agridat, reshape2, matrixStats, tidyr, prettydoc
Suggests: spelling, knitr, rmarkdown, testthat
Published: 2021-09-16
Author: Julia Angelini ORCID iD [aut, cre], Marcos Prunello ORCID iD [aut], Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93 at hotmail.com>
BugReports: https://github.com/jangelini/geneticae/issues
License: GPL-2
URL: https://github.com/jangelini/geneticae
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: geneticae results

Documentation:

Reference manual: geneticae.pdf
Vignettes: How to use the geneticae package
How to use the geneticae Shiny App

Downloads:

Package source: geneticae_0.1.0.tar.gz
Windows binaries: r-devel: geneticae_0.1.0.zip, r-release: geneticae_0.1.0.zip, r-oldrel: geneticae_0.1.0.zip
macOS binaries: r-release (arm64): geneticae_0.1.0.tgz, r-release (x86_64): geneticae_0.1.0.tgz, r-oldrel: geneticae_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=geneticae to link to this page.